Wall clock time and date at job start Wed Apr 1 2020 05:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00135 * 2 1 4 4 H 1.09003 * 109.47472 * 330.00321 * 3 2 1 5 5 C 1.53003 * 109.47104 * 90.00240 * 3 2 1 6 6 C 1.50704 * 109.47303 * 210.00454 * 3 2 1 7 7 N 1.30169 * 121.06523 * 315.02226 * 6 3 2 8 8 S 1.69952 * 105.74135 * 179.71330 * 7 6 3 9 9 C 1.72294 * 94.56355 * 0.34496 * 8 7 6 10 10 N 1.38790 * 127.50146 * 179.91186 * 9 8 7 11 11 C 1.34780 * 119.99880 * 359.68978 * 10 9 8 12 12 O 1.21271 * 119.99873 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99771 * 179.97438 * 11 10 9 14 14 C 1.50697 * 109.46974 * 179.97438 * 13 11 10 15 15 C 1.37639 * 120.12874 * 265.00334 * 14 13 11 16 16 C 1.38619 * 120.24845 * 180.25000 * 15 14 13 17 17 C 1.38655 * 120.49866 * 359.44811 * 16 15 14 18 18 C 1.37600 * 120.24725 * 0.55522 * 17 16 15 19 19 C 1.40696 * 120.12697 * 84.98234 * 14 13 11 20 20 C 1.41390 * 120.24641 * 0.02562 * 19 14 13 21 21 H 1.08004 * 119.99865 * 334.08674 * 20 19 14 22 22 C 1.39940 * 120.00399 * 154.09052 * 20 19 14 23 23 N 1.30822 * 119.99912 * 343.61139 * 22 20 19 24 24 Si 1.86803 * 120.00192 * 163.62242 * 22 20 19 25 25 H 1.48494 * 109.47012 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47407 * 119.99663 * 24 22 20 27 27 H 1.48508 * 109.46756 * 239.99409 * 24 22 20 28 28 N 1.31226 * 121.06841 * 135.00385 * 6 3 2 29 29 H 1.08999 * 109.46357 * 299.99742 * 1 2 3 30 30 H 1.08992 * 109.46988 * 59.99738 * 1 2 3 31 31 H 1.08996 * 109.46982 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46983 * 179.97438 * 5 3 2 33 33 H 1.09002 * 109.47249 * 300.00002 * 5 3 2 34 34 H 1.08999 * 109.46776 * 60.00464 * 5 3 2 35 35 H 0.97003 * 120.00326 * 179.67671 * 10 9 8 36 36 H 1.09005 * 109.46844 * 60.00157 * 13 11 10 37 37 H 1.08998 * 109.47432 * 299.99913 * 13 11 10 38 38 H 1.07995 * 119.87991 * 359.97438 * 15 14 13 39 39 H 1.07999 * 119.74930 * 179.70024 * 16 15 14 40 40 H 1.08004 * 119.87487 * 180.29445 * 17 16 15 41 41 H 1.08002 * 120.12509 * 179.74760 * 18 17 16 42 42 H 0.97001 * 120.00439 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2178 1.7713 1.4425 6 6 3.3387 1.2639 -0.7105 7 7 4.1963 0.3131 -0.4762 8 16 5.5308 0.6390 -1.4769 9 6 4.8471 2.0671 -2.1563 10 7 5.4147 2.9073 -3.1041 11 6 6.6430 2.6414 -3.5910 12 8 7.2524 1.6683 -3.2006 13 6 7.2591 3.5534 -4.6204 14 6 8.6245 3.0377 -4.9954 15 6 9.7457 3.5309 -4.3677 16 6 11.0033 3.0621 -4.7144 17 6 11.1463 2.0846 -5.6873 18 6 10.0394 1.5771 -6.3280 19 6 8.7581 2.0498 -5.9883 20 6 7.6135 1.5357 -6.6401 21 1 6.6551 1.5538 -6.1426 22 6 7.7225 1.0034 -7.9297 23 7 8.7794 1.2609 -8.6564 24 14 6.3587 -0.0745 -8.6136 25 1 5.2816 -0.2121 -7.6007 26 1 5.8057 0.5475 -9.8434 27 1 6.9050 -1.4163 -8.9402 28 7 3.6677 2.1848 -1.5855 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 2.6616 2.7669 1.4425 33 1 1.2570 1.8014 1.9564 34 1 2.8831 1.0773 1.9562 35 1 4.9273 3.6857 -3.4161 36 1 7.3513 4.5578 -4.2072 37 1 6.6251 3.5818 -5.5066 38 1 9.6457 4.2893 -3.6053 39 1 11.8780 3.4582 -4.2200 40 1 12.1306 1.7232 -5.9462 41 1 10.1534 0.8187 -7.0885 42 1 8.8551 0.8916 -9.5502 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800989716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:21 Heat of formation + Delta-G solvation = -22.107842 kcal Electronic energy + Delta-G solvation = -27096.349549 eV Core-core repulsion = 23167.630783 eV Total energy + Delta-G solvation = -3928.718766 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.85089 -41.16633 -39.30669 -38.90729 -36.39240 -35.50670 -33.75798 -32.98081 -32.03219 -31.34660 -28.97489 -27.73368 -27.16011 -26.52193 -24.04602 -22.91353 -22.80155 -21.68978 -20.90877 -19.81522 -19.08932 -18.73148 -17.97481 -17.40605 -17.30758 -16.99054 -16.87074 -16.39317 -16.24971 -15.77753 -15.52200 -15.17365 -15.09804 -14.42019 -14.38466 -13.81641 -13.57929 -13.44587 -13.39481 -13.21013 -12.93999 -12.91970 -12.78890 -12.74114 -12.60261 -12.53992 -12.46145 -12.13617 -11.95174 -11.32695 -11.31792 -11.22197 -11.03775 -10.90549 -10.84866 -10.73530 -9.89915 -9.22208 -9.19439 -8.61382 -6.30880 -0.69702 -0.20557 0.63897 0.90971 1.07877 1.09032 1.36462 1.39465 1.47464 1.51829 1.64610 2.17786 2.49968 2.78158 3.30311 3.62315 3.88945 3.96515 4.04326 4.13602 4.29484 4.39198 4.47317 4.49405 4.56885 4.60397 4.68123 4.72057 4.76852 4.81854 4.87200 4.87893 5.04984 5.18592 5.19391 5.37355 5.54666 5.74039 5.81652 6.04114 6.12073 6.15762 6.23917 6.40295 6.44800 6.72030 6.76056 6.97486 7.10932 8.34940 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.002960 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.313911 B = 9457.747746 C =10852.703587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.401 6.401 3 C 0.176 3.824 4 H 0.110 0.890 5 C -0.160 4.160 6 C 0.277 3.723 7 N -0.508 5.508 8 S 0.280 5.720 9 C 0.294 3.706 10 N -0.597 5.597 11 C 0.516 3.484 12 O -0.511 6.511 13 C -0.055 4.055 14 C -0.196 4.196 15 C -0.082 4.082 16 C -0.243 4.243 17 C -0.114 4.114 18 C -0.193 4.193 19 C 0.100 3.900 20 C -0.481 4.481 21 H 0.075 0.925 22 C 0.041 3.959 23 N -0.822 5.822 24 Si 0.963 3.037 25 H -0.265 1.265 26 H -0.260 1.260 27 H -0.272 1.272 28 N -0.549 5.549 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.444 0.556 36 H 0.136 0.864 37 H 0.116 0.884 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.873 5.828 12.230 20.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.113 3.887 4 H 0.128 0.872 5 C -0.218 4.218 6 C -0.014 4.014 7 N -0.342 5.342 8 S 0.417 5.583 9 C -0.083 4.083 10 N -0.251 5.251 11 C 0.305 3.695 12 O -0.382 6.382 13 C -0.094 4.094 14 C -0.198 4.198 15 C -0.100 4.100 16 C -0.262 4.262 17 C -0.133 4.133 18 C -0.213 4.213 19 C 0.098 3.902 20 C -0.511 4.511 21 H 0.093 0.907 22 C -0.174 4.174 23 N -0.449 5.449 24 Si 0.785 3.215 25 H -0.188 1.188 26 H -0.185 1.185 27 H -0.197 1.197 28 N -0.283 5.283 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.073 0.927 35 H 0.287 0.713 36 H 0.154 0.846 37 H 0.134 0.866 38 H 0.141 0.859 39 H 0.132 0.868 40 H 0.120 0.880 41 H 0.113 0.887 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.608 3.953 12.633 18.984 hybrid contribution -0.999 0.351 -1.133 1.551 sum -14.607 4.304 11.500 19.083 Atomic orbital electron populations 1.23089 0.78367 1.04196 1.01605 1.87996 1.22189 1.26598 1.95176 1.20527 0.86085 0.86330 0.95793 0.87224 1.22202 1.04322 1.01795 0.93476 1.23381 0.98670 0.86514 0.92841 1.77448 1.04838 1.26874 1.25004 1.86201 1.22132 1.18343 1.31598 1.25227 0.92533 0.96604 0.93927 1.43089 1.17793 1.27365 1.36826 1.22239 0.78622 0.86726 0.81931 1.90717 1.60681 1.28935 1.57826 1.20305 0.94645 0.97967 0.96512 1.19396 0.93440 1.02429 1.04499 1.20773 0.92305 0.99018 0.97941 1.20739 0.97201 1.04312 1.03981 1.20963 0.97336 0.97868 0.97098 1.21307 0.93428 1.03401 1.03155 1.17703 0.92979 0.89077 0.90460 1.19648 0.95667 1.36303 0.99456 0.90733 1.26561 0.98507 0.95304 0.97073 1.69871 1.29248 1.35904 1.09835 0.85437 0.78741 0.78547 0.78747 1.18843 1.18493 1.19729 1.67292 1.14945 1.30792 1.15251 0.91542 0.92933 0.88546 0.90516 0.88443 0.92703 0.71302 0.84605 0.86625 0.85867 0.86785 0.88000 0.88747 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.82 113.37 1.23 1.54 16 2 O -0.40 -9.39 10.23 -148.98 -1.52 -10.92 16 3 C 0.18 3.78 3.19 29.85 0.10 3.87 16 4 H 0.11 1.86 7.79 -2.39 -0.02 1.84 16 5 C -0.16 -2.67 9.51 71.98 0.68 -1.98 16 6 C 0.28 8.10 6.52 139.40 0.91 9.01 16 7 N -0.51 -17.10 12.02 -60.47 -0.73 -17.82 16 8 S 0.28 9.71 21.17 -56.49 -1.20 8.52 16 9 C 0.29 8.95 8.51 178.72 1.52 10.47 16 10 N -0.60 -15.51 5.40 -311.56 -1.68 -17.19 16 11 C 0.52 16.86 7.42 87.66 0.65 17.51 16 12 O -0.51 -21.22 13.79 -3.00 -0.04 -21.26 16 13 C -0.06 -1.71 5.18 29.10 0.15 -1.56 16 14 C -0.20 -8.31 4.43 -19.41 -0.09 -8.40 16 15 C -0.08 -3.29 9.66 22.22 0.21 -3.08 16 16 C -0.24 -10.24 10.05 22.46 0.23 -10.02 16 17 C -0.11 -5.33 10.02 22.22 0.22 -5.11 16 18 C -0.19 -10.14 8.68 22.73 0.20 -9.95 16 19 C 0.10 5.07 5.56 -21.29 -0.12 4.95 16 20 C -0.48 -24.20 8.14 23.46 0.19 -24.01 16 21 H 0.07 3.58 6.67 -2.91 -0.02 3.56 16 22 C 0.04 1.99 5.16 85.26 0.44 2.43 16 23 N -0.82 -41.96 10.97 21.82 0.24 -41.72 16 24 Si 0.96 38.03 29.59 68.60 2.03 40.06 16 25 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 26 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 27 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 28 N -0.55 -15.77 10.60 -199.74 -2.12 -17.89 16 29 H 0.07 0.60 7.87 -2.39 -0.02 0.58 16 30 H 0.05 0.62 8.08 -2.39 -0.02 0.60 16 31 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.10 1.07 7.87 -2.39 -0.02 1.05 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.44 7.78 8.82 -92.71 -0.82 6.97 16 36 H 0.14 2.94 8.05 -2.38 -0.02 2.92 16 37 H 0.12 3.50 7.06 -2.39 -0.02 3.48 16 38 H 0.12 3.97 8.06 -2.91 -0.02 3.94 16 39 H 0.11 4.11 8.06 -2.91 -0.02 4.08 16 40 H 0.10 4.27 8.06 -2.91 -0.02 4.25 16 41 H 0.09 5.26 6.22 -2.91 -0.02 5.24 16 42 H 0.29 13.29 8.30 -92.71 -0.77 12.52 16 Total: -1.00 -68.56 373.27 1.76 -66.79 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.26 Total: 25.75 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: 6.52 Total: -14.32 kcal Atomic # 7 Polarization: -90.34 SS G_CDS: -4.29 Total: -94.62 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -1.57 Total: -32.17 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Atomic # 16 Polarization: 9.71 SS G_CDS: -1.20 Total: 8.52 kcal Total: -68.56 1.76 -66.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800989716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.686 kcal (2) G-P(sol) polarization free energy of solvation -68.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds