Wall clock time and date at job start Wed Apr 1 2020 05:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42904 * 114.00283 * 2 1 4 4 H 1.08995 * 109.46801 * 29.99652 * 3 2 1 5 5 C 1.52998 * 109.46916 * 270.00246 * 3 2 1 6 6 C 1.50697 * 109.47181 * 149.99906 * 3 2 1 7 7 N 1.30167 * 121.07024 * 44.97770 * 6 3 2 8 8 S 1.69952 * 105.74464 * 180.02562 * 7 6 3 9 9 C 1.72300 * 94.56456 * 359.97438 * 8 7 6 10 10 N 1.38786 * 127.50392 * 179.97438 * 9 8 7 11 11 C 1.34775 * 119.99762 * 0.03219 * 10 9 8 12 12 O 1.21272 * 120.00111 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99981 * 180.02562 * 11 10 9 14 14 C 1.50698 * 109.47284 * 180.02562 * 13 11 10 15 15 C 1.37642 * 120.12442 * 265.00032 * 14 13 11 16 16 C 1.38618 * 120.24967 * 179.97438 * 15 14 13 17 17 C 1.38653 * 120.49651 * 0.02562 * 16 15 14 18 18 C 1.37601 * 120.25157 * 0.02562 * 17 16 15 19 19 C 1.40694 * 120.13023 * 84.72049 * 14 13 11 20 20 C 1.41387 * 120.24510 * 0.02562 * 19 14 13 21 21 H 1.08001 * 119.99876 * 333.89268 * 20 19 14 22 22 C 1.39953 * 120.00492 * 153.89291 * 20 19 14 23 23 N 1.30826 * 119.99309 * 343.71990 * 22 20 19 24 24 Si 1.86799 * 120.00180 * 163.71548 * 22 20 19 25 25 H 1.48501 * 109.47064 * 60.00397 * 24 22 20 26 26 H 1.48499 * 109.46671 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47213 * 300.00111 * 24 22 20 28 28 N 1.31233 * 121.06414 * 224.99395 * 6 3 2 29 29 H 1.09000 * 109.47341 * 59.99852 * 1 2 3 30 30 H 1.09005 * 109.47199 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47131 * 300.00502 * 1 2 3 32 32 H 1.09003 * 109.47425 * 299.99672 * 5 3 2 33 33 H 1.08996 * 109.47772 * 59.99758 * 5 3 2 34 34 H 1.09002 * 109.47147 * 179.97438 * 5 3 2 35 35 H 0.96996 * 120.00383 * 180.02562 * 10 9 8 36 36 H 1.09003 * 109.46943 * 299.99789 * 13 11 10 37 37 H 1.09002 * 109.47129 * 59.99573 * 13 11 10 38 38 H 1.08005 * 119.87777 * 359.97438 * 15 14 13 39 39 H 1.07990 * 119.75031 * 179.97438 * 16 15 14 40 40 H 1.08006 * 119.87497 * 180.02562 * 17 16 15 41 41 H 1.07998 * 120.12528 * 179.97438 * 18 17 16 42 42 H 0.96997 * 119.99436 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2176 1.7713 -1.4425 6 6 3.3386 1.2638 0.7104 7 7 4.1962 0.3131 0.4761 8 16 5.5338 0.6430 1.4713 9 6 4.8474 2.0674 2.1558 10 7 5.4148 2.9074 3.1038 11 6 6.6430 2.6414 3.5908 12 8 7.2521 1.6678 3.2011 13 6 7.2590 3.5531 4.6205 14 6 8.6244 3.0373 4.9957 15 6 8.7783 2.2293 6.0992 16 6 10.0330 1.7529 6.4463 17 6 11.1458 2.0841 5.6885 18 6 11.0156 2.8914 4.5818 19 6 9.7457 3.3751 4.2159 20 6 9.5988 4.2000 3.0771 21 1 8.6551 4.2342 2.5531 22 6 10.6764 4.9724 2.6287 23 7 11.6994 5.1869 3.4154 24 14 10.6538 5.6970 0.9071 25 1 9.4825 6.5986 0.7648 26 1 11.9026 6.4671 0.6779 27 1 10.5588 4.6008 -0.0901 28 7 3.6677 2.1848 1.5854 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.8829 1.0774 -1.9564 33 1 1.2569 1.8014 -1.9564 34 1 2.6606 2.7673 -1.4425 35 1 4.9276 3.6859 3.4157 36 1 7.3514 4.5577 4.2075 37 1 6.6248 3.5815 5.5066 38 1 7.9184 1.9653 6.6970 39 1 10.1446 1.1198 7.3140 40 1 12.1186 1.7070 5.9678 41 1 11.8839 3.1484 3.9932 42 1 12.4464 5.7219 3.1046 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800989717.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:27 Heat of formation + Delta-G solvation = -3.739276 kcal Electronic energy + Delta-G solvation = -27090.198022 eV Core-core repulsion = 23162.275776 eV Total energy + Delta-G solvation = -3927.922245 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.60919 -39.86874 -38.10457 -37.53594 -35.08434 -33.73454 -32.38168 -31.76981 -30.94242 -29.57664 -27.44443 -27.06019 -25.75425 -25.05778 -22.93812 -21.57822 -21.04928 -20.37210 -19.51209 -18.53678 -17.57118 -17.26286 -16.72947 -16.31594 -16.02400 -15.90273 -15.57119 -15.31881 -14.62092 -14.55230 -13.96071 -13.62264 -13.60519 -13.51436 -13.01564 -12.69049 -12.65545 -12.21254 -11.92277 -11.75968 -11.67298 -11.59987 -11.51809 -11.29160 -11.18521 -11.13187 -11.07942 -10.81337 -10.50285 -10.02709 -9.92534 -9.61166 -9.58366 -9.56770 -9.50604 -9.25201 -8.62134 -7.45287 -7.42340 -6.84324 -4.47262 0.56286 1.04568 1.88469 2.27662 2.40513 2.75413 2.88181 2.96416 3.01005 3.03848 3.20024 3.44282 3.85555 4.25903 4.55588 4.73281 4.84506 5.03167 5.04242 5.11097 5.15771 5.36990 5.44981 5.55334 5.57467 5.64772 5.75655 5.84542 5.93523 6.06427 6.16152 6.23517 6.40678 6.65428 6.80996 6.96975 6.99713 7.17911 7.30227 7.52026 7.65261 7.79506 7.92918 8.01058 8.04206 8.18700 8.52859 8.78667 8.88871 10.09422 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014055 B = 0.002903 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.625907 B = 9641.614416 C =10943.312169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.371 6.371 3 C 0.179 3.821 4 H 0.089 0.911 5 C -0.167 4.167 6 C 0.280 3.720 7 N -0.492 5.492 8 S 0.328 5.672 9 C 0.290 3.710 10 N -0.618 5.618 11 C 0.509 3.491 12 O -0.471 6.471 13 C -0.058 4.058 14 C -0.196 4.196 15 C -0.075 4.075 16 C -0.239 4.239 17 C -0.103 4.103 18 C -0.157 4.157 19 C 0.132 3.868 20 C -0.459 4.459 21 H 0.072 0.928 22 C 0.079 3.921 23 N -0.790 5.790 24 Si 0.902 3.098 25 H -0.265 1.265 26 H -0.277 1.277 27 H -0.263 1.263 28 N -0.559 5.559 29 H 0.044 0.956 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.424 0.576 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.118 0.882 42 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.586 -1.379 -3.987 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C 0.116 3.884 4 H 0.107 0.893 5 C -0.225 4.225 6 C -0.011 4.011 7 N -0.327 5.327 8 S 0.465 5.535 9 C -0.086 4.086 10 N -0.270 5.270 11 C 0.297 3.703 12 O -0.338 6.338 13 C -0.097 4.097 14 C -0.198 4.198 15 C -0.094 4.094 16 C -0.258 4.258 17 C -0.121 4.121 18 C -0.176 4.176 19 C 0.129 3.871 20 C -0.488 4.488 21 H 0.090 0.910 22 C -0.140 4.140 23 N -0.415 5.415 24 Si 0.726 3.274 25 H -0.190 1.190 26 H -0.202 1.202 27 H -0.187 1.187 28 N -0.293 5.293 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.263 0.737 36 H 0.126 0.874 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.136 0.864 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.144 -3.107 -4.623 16.136 hybrid contribution -1.011 1.807 -0.370 2.103 sum -16.155 -1.300 -4.993 16.959 Atomic orbital electron populations 1.22853 0.80616 1.03079 1.00115 1.88034 1.19687 1.26154 1.94963 1.20242 0.87518 0.85836 0.94803 0.89298 1.22233 1.03106 1.02292 0.94914 1.22536 0.97650 0.87409 0.93495 1.77359 1.04582 1.26071 1.24658 1.86064 1.20325 1.16739 1.30373 1.25150 0.92443 0.97200 0.93796 1.43407 1.18584 1.27218 1.37749 1.22320 0.77950 0.87340 0.82695 1.90708 1.58732 1.27688 1.56672 1.20258 0.95736 0.98627 0.95108 1.18924 0.92254 1.09134 0.99530 1.20311 0.95754 0.96994 0.96306 1.20326 0.93315 1.08966 1.03212 1.20717 0.96434 0.98587 0.96397 1.21318 0.98380 0.99653 0.98298 1.17318 0.90519 0.88812 0.90418 1.19417 0.97966 1.21477 1.09940 0.90967 1.25870 0.94595 0.95106 0.98383 1.69798 1.06800 1.29520 1.35385 0.86462 0.78593 0.79563 0.82775 1.18998 1.20173 1.18740 1.67188 1.15893 1.30773 1.15419 0.93757 0.89296 0.93813 0.90886 0.91269 0.91070 0.73674 0.87353 0.89254 0.89565 0.89483 0.89421 0.86398 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.82 101.05 1.09 1.32 16 2 O -0.37 -4.55 10.23 -35.23 -0.36 -4.91 16 3 C 0.18 2.11 3.19 -27.89 -0.09 2.02 16 4 H 0.09 0.88 7.78 -51.93 -0.40 0.48 16 5 C -0.17 -1.65 9.51 37.16 0.35 -1.30 16 6 C 0.28 4.26 6.52 -159.05 -1.04 3.22 16 7 N -0.49 -8.29 12.02 29.54 0.36 -7.94 16 8 S 0.33 5.61 21.17 -107.50 -2.28 3.33 16 9 C 0.29 4.58 8.51 -85.96 -0.73 3.85 16 10 N -0.62 -8.67 5.40 -12.41 -0.07 -8.73 16 11 C 0.51 8.71 7.40 -10.99 -0.08 8.63 16 12 O -0.47 -9.81 13.79 5.56 0.08 -9.73 16 13 C -0.06 -0.97 5.18 -29.04 -0.15 -1.12 16 14 C -0.20 -4.29 4.43 -103.91 -0.46 -4.75 16 15 C -0.08 -1.59 9.66 -39.66 -0.38 -1.98 16 16 C -0.24 -5.21 10.05 -39.29 -0.39 -5.61 16 17 C -0.10 -2.37 10.02 -39.66 -0.40 -2.77 16 18 C -0.16 -3.97 8.68 -38.87 -0.34 -4.31 16 19 C 0.13 3.28 5.56 -106.83 -0.59 2.68 16 20 C -0.46 -11.26 8.14 -37.74 -0.31 -11.57 16 21 H 0.07 1.70 6.67 -52.49 -0.35 1.35 16 22 C 0.08 1.88 5.16 -17.34 -0.09 1.79 16 23 N -0.79 -19.44 10.95 55.55 0.61 -18.84 16 24 Si 0.90 18.12 29.59 -169.99 -5.03 13.09 16 25 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 26 H -0.28 -5.43 7.11 56.52 0.40 -5.02 16 27 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 28 N -0.56 -8.50 10.60 -14.48 -0.15 -8.65 16 29 H 0.04 0.27 7.87 -51.93 -0.41 -0.14 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.04 0.30 8.09 -51.93 -0.42 -0.12 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.51 7.87 -51.93 -0.41 0.11 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.42 4.39 8.82 -40.82 -0.36 4.03 16 36 H 0.11 1.76 7.08 -51.93 -0.37 1.39 16 37 H 0.09 1.18 8.05 -51.93 -0.42 0.76 16 38 H 0.09 1.57 8.06 -52.48 -0.42 1.15 16 39 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 40 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 41 H 0.12 3.08 6.20 -52.49 -0.33 2.76 16 42 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 LS Contribution 373.24 15.07 5.62 5.62 Total: -1.00 -30.22 373.24 -9.96 -40.19 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -5.13 Total: 6.42 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -3.61 Total: -9.87 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.74 Total: -44.15 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.28 Total: -14.64 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Atomic # 16 Polarization: 5.61 SS G_CDS: -2.28 Total: 3.33 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.22 -9.96 -40.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800989717.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.447 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds