Wall clock time and date at job start Wed Apr 1 2020 05:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42904 * 114.00283 * 2 1 4 4 H 1.08995 * 109.46801 * 29.99652 * 3 2 1 5 5 C 1.52998 * 109.46916 * 270.00246 * 3 2 1 6 6 C 1.50697 * 109.47181 * 149.99906 * 3 2 1 7 7 N 1.30167 * 121.07024 * 44.97770 * 6 3 2 8 8 S 1.69952 * 105.74464 * 180.02562 * 7 6 3 9 9 C 1.72300 * 94.56456 * 359.97438 * 8 7 6 10 10 N 1.38786 * 127.50392 * 179.97438 * 9 8 7 11 11 C 1.34775 * 119.99762 * 0.03219 * 10 9 8 12 12 O 1.21272 * 120.00111 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99981 * 180.02562 * 11 10 9 14 14 C 1.50698 * 109.47284 * 180.02562 * 13 11 10 15 15 C 1.37642 * 120.12442 * 265.00032 * 14 13 11 16 16 C 1.38618 * 120.24967 * 179.97438 * 15 14 13 17 17 C 1.38653 * 120.49651 * 0.02562 * 16 15 14 18 18 C 1.37601 * 120.25157 * 0.02562 * 17 16 15 19 19 C 1.40694 * 120.13023 * 84.72049 * 14 13 11 20 20 C 1.41387 * 120.24510 * 0.02562 * 19 14 13 21 21 H 1.08001 * 119.99876 * 333.89268 * 20 19 14 22 22 C 1.39953 * 120.00492 * 153.89291 * 20 19 14 23 23 N 1.30826 * 119.99309 * 343.71990 * 22 20 19 24 24 Si 1.86799 * 120.00180 * 163.71548 * 22 20 19 25 25 H 1.48501 * 109.47064 * 60.00397 * 24 22 20 26 26 H 1.48499 * 109.46671 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47213 * 300.00111 * 24 22 20 28 28 N 1.31233 * 121.06414 * 224.99395 * 6 3 2 29 29 H 1.09000 * 109.47341 * 59.99852 * 1 2 3 30 30 H 1.09005 * 109.47199 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47131 * 300.00502 * 1 2 3 32 32 H 1.09003 * 109.47425 * 299.99672 * 5 3 2 33 33 H 1.08996 * 109.47772 * 59.99758 * 5 3 2 34 34 H 1.09002 * 109.47147 * 179.97438 * 5 3 2 35 35 H 0.96996 * 120.00383 * 180.02562 * 10 9 8 36 36 H 1.09003 * 109.46943 * 299.99789 * 13 11 10 37 37 H 1.09002 * 109.47129 * 59.99573 * 13 11 10 38 38 H 1.08005 * 119.87777 * 359.97438 * 15 14 13 39 39 H 1.07990 * 119.75031 * 179.97438 * 16 15 14 40 40 H 1.08006 * 119.87497 * 180.02562 * 17 16 15 41 41 H 1.07998 * 120.12528 * 179.97438 * 18 17 16 42 42 H 0.96997 * 119.99436 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2176 1.7713 -1.4425 6 6 3.3386 1.2638 0.7104 7 7 4.1962 0.3131 0.4761 8 16 5.5338 0.6430 1.4713 9 6 4.8474 2.0674 2.1558 10 7 5.4148 2.9074 3.1038 11 6 6.6430 2.6414 3.5908 12 8 7.2521 1.6678 3.2011 13 6 7.2590 3.5531 4.6205 14 6 8.6244 3.0373 4.9957 15 6 8.7783 2.2293 6.0992 16 6 10.0330 1.7529 6.4463 17 6 11.1458 2.0841 5.6885 18 6 11.0156 2.8914 4.5818 19 6 9.7457 3.3751 4.2159 20 6 9.5988 4.2000 3.0771 21 1 8.6551 4.2342 2.5531 22 6 10.6764 4.9724 2.6287 23 7 11.6994 5.1869 3.4154 24 14 10.6538 5.6970 0.9071 25 1 9.4825 6.5986 0.7648 26 1 11.9026 6.4671 0.6779 27 1 10.5588 4.6008 -0.0901 28 7 3.6677 2.1848 1.5854 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.8829 1.0774 -1.9564 33 1 1.2569 1.8014 -1.9564 34 1 2.6606 2.7673 -1.4425 35 1 4.9276 3.6859 3.4157 36 1 7.3514 4.5577 4.2075 37 1 6.6248 3.5815 5.5066 38 1 7.9184 1.9653 6.6970 39 1 10.1446 1.1198 7.3140 40 1 12.1186 1.7070 5.9678 41 1 11.8839 3.1484 3.9932 42 1 12.4464 5.7219 3.1046 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800989717.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:26 Heat of formation + Delta-G solvation = -21.886644 kcal Electronic energy + Delta-G solvation = -27090.984951 eV Core-core repulsion = 23162.275776 eV Total energy + Delta-G solvation = -3928.709174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.84988 -41.16563 -39.30406 -38.90332 -36.39134 -35.50152 -33.75643 -32.98063 -32.03446 -31.34187 -28.97337 -27.72857 -27.15593 -26.52024 -24.04717 -22.91191 -22.79842 -21.68859 -20.90753 -19.81344 -19.08250 -18.72800 -17.97602 -17.44643 -17.19370 -17.04847 -16.88693 -16.36439 -16.25758 -15.77185 -15.51757 -15.17077 -15.10361 -14.41899 -14.36681 -13.81390 -13.58283 -13.44889 -13.38975 -13.20539 -12.93908 -12.91390 -12.77762 -12.76781 -12.58802 -12.53697 -12.45411 -12.13508 -11.95224 -11.32632 -11.31882 -11.22337 -11.02707 -10.89052 -10.86206 -10.73045 -9.89809 -9.22012 -9.19337 -8.60395 -6.30386 -0.69558 -0.20470 0.64032 0.91251 1.07561 1.11367 1.36970 1.40665 1.45306 1.54522 1.63223 2.18551 2.49906 2.79013 3.30567 3.62515 3.88845 3.96687 4.03536 4.13639 4.29587 4.39234 4.47724 4.49872 4.57673 4.60327 4.67076 4.72064 4.76741 4.81456 4.87085 4.88523 5.05080 5.17671 5.19421 5.37662 5.54959 5.74225 5.81791 6.04257 6.12260 6.15882 6.24047 6.40549 6.44900 6.72131 6.76194 6.97741 7.11324 8.35428 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014055 B = 0.002903 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.625907 B = 9641.614416 C =10943.312169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.400 6.400 3 C 0.177 3.823 4 H 0.111 0.889 5 C -0.161 4.161 6 C 0.277 3.723 7 N -0.508 5.508 8 S 0.280 5.720 9 C 0.294 3.706 10 N -0.597 5.597 11 C 0.516 3.484 12 O -0.511 6.511 13 C -0.055 4.055 14 C -0.196 4.196 15 C -0.083 4.083 16 C -0.244 4.244 17 C -0.114 4.114 18 C -0.194 4.194 19 C 0.100 3.900 20 C -0.481 4.481 21 H 0.076 0.924 22 C 0.040 3.960 23 N -0.822 5.822 24 Si 0.962 3.038 25 H -0.252 1.252 26 H -0.269 1.269 27 H -0.273 1.273 28 N -0.549 5.549 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.444 0.556 36 H 0.116 0.884 37 H 0.135 0.865 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.654 -0.457 -3.788 20.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.318 6.318 3 C 0.114 3.886 4 H 0.129 0.871 5 C -0.220 4.220 6 C -0.014 4.014 7 N -0.342 5.342 8 S 0.417 5.583 9 C -0.083 4.083 10 N -0.251 5.251 11 C 0.305 3.695 12 O -0.382 6.382 13 C -0.094 4.094 14 C -0.198 4.198 15 C -0.101 4.101 16 C -0.263 4.263 17 C -0.133 4.133 18 C -0.213 4.213 19 C 0.098 3.902 20 C -0.511 4.511 21 H 0.094 0.906 22 C -0.175 4.175 23 N -0.448 5.448 24 Si 0.784 3.216 25 H -0.176 1.176 26 H -0.194 1.194 27 H -0.198 1.198 28 N -0.283 5.283 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.287 0.713 36 H 0.134 0.866 37 H 0.153 0.847 38 H 0.141 0.859 39 H 0.132 0.868 40 H 0.120 0.880 41 H 0.113 0.887 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.260 -2.158 -4.413 18.909 hybrid contribution -0.175 1.440 -0.341 1.490 sum -18.435 -0.718 -4.755 19.051 Atomic orbital electron populations 1.23097 0.78344 1.04236 1.01608 1.87995 1.22204 1.26464 1.95163 1.20498 0.86126 0.86400 0.95583 0.87092 1.22211 1.04315 1.01697 0.93767 1.23371 0.98660 0.86503 0.92854 1.77448 1.04642 1.27021 1.25067 1.86210 1.21736 1.18534 1.31798 1.25226 0.92405 0.96763 0.93874 1.43084 1.17780 1.27366 1.36823 1.22234 0.78326 0.86600 0.82355 1.90719 1.60002 1.29461 1.57971 1.20302 0.93928 0.98268 0.96920 1.19396 0.93765 1.07862 0.98766 1.20774 0.96770 0.96159 0.96384 1.20732 0.93240 1.08747 1.03581 1.20962 0.97931 0.98313 0.96075 1.21318 0.98387 1.01899 0.99711 1.17698 0.91440 0.89604 0.91454 1.19603 0.98606 1.22227 1.10663 0.90639 1.26583 0.94153 0.95344 1.01425 1.69866 1.07510 1.30515 1.36958 0.85539 0.79249 0.78658 0.78122 1.17574 1.19388 1.19800 1.67295 1.15181 1.30514 1.15280 0.91731 0.88439 0.92781 0.92784 0.88379 0.90780 0.71300 0.86565 0.84686 0.85948 0.86844 0.88013 0.88683 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.82 113.37 1.23 1.52 16 2 O -0.40 -9.10 10.23 -148.98 -1.52 -10.63 16 3 C 0.18 3.79 3.19 29.85 0.10 3.89 16 4 H 0.11 1.85 7.78 -2.39 -0.02 1.83 16 5 C -0.16 -2.85 9.51 71.98 0.68 -2.16 16 6 C 0.28 8.08 6.52 139.40 0.91 8.99 16 7 N -0.51 -17.07 12.02 -60.46 -0.73 -17.80 16 8 S 0.28 9.69 21.17 -56.49 -1.20 8.49 16 9 C 0.29 8.91 8.51 178.72 1.52 10.43 16 10 N -0.60 -15.42 5.40 -311.57 -1.68 -17.10 16 11 C 0.52 16.81 7.40 87.66 0.65 17.46 16 12 O -0.51 -21.18 13.79 -3.00 -0.04 -21.22 16 13 C -0.05 -1.71 5.18 29.10 0.15 -1.56 16 14 C -0.20 -8.33 4.43 -19.41 -0.09 -8.41 16 15 C -0.08 -3.33 9.66 22.22 0.21 -3.11 16 16 C -0.24 -10.32 10.05 22.46 0.23 -10.09 16 17 C -0.11 -5.34 10.02 22.22 0.22 -5.12 16 18 C -0.19 -10.15 8.68 22.73 0.20 -9.95 16 19 C 0.10 5.07 5.56 -21.29 -0.12 4.95 16 20 C -0.48 -24.06 8.14 23.46 0.19 -23.87 16 21 H 0.08 3.58 6.67 -2.91 -0.02 3.56 16 22 C 0.04 1.95 5.16 85.26 0.44 2.39 16 23 N -0.82 -41.85 10.95 21.83 0.24 -41.62 16 24 Si 0.96 37.58 29.59 68.60 2.03 39.61 16 25 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 26 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 27 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 28 N -0.55 -15.70 10.60 -199.72 -2.12 -17.82 16 29 H 0.06 0.56 7.87 -2.39 -0.02 0.54 16 30 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.05 0.58 8.09 -2.38 -0.02 0.56 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.10 1.14 7.87 -2.39 -0.02 1.13 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.44 7.73 8.82 -92.71 -0.82 6.92 16 36 H 0.12 3.49 7.08 -2.39 -0.02 3.48 16 37 H 0.14 2.94 8.05 -2.39 -0.02 2.92 16 38 H 0.12 3.98 8.06 -2.91 -0.02 3.95 16 39 H 0.11 4.12 8.06 -2.92 -0.02 4.09 16 40 H 0.10 4.28 8.06 -2.91 -0.02 4.25 16 41 H 0.10 5.29 6.20 -2.91 -0.02 5.27 16 42 H 0.29 13.34 8.30 -92.71 -0.77 12.57 16 Total: -1.00 -68.14 373.24 1.76 -66.38 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.26 Total: 26.36 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 6.52 Total: -14.64 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -4.29 Total: -94.34 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -1.57 Total: -31.85 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Atomic # 16 Polarization: 9.69 SS G_CDS: -1.20 Total: 8.49 kcal Total: -68.14 1.76 -66.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800989717.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.490 kcal (2) G-P(sol) polarization free energy of solvation -68.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds