Wall clock time and date at job start Wed Apr 1 2020 05:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.00161 * 2 1 4 4 C 1.54331 * 109.87909 * 238.90352 * 2 1 3 5 5 C 1.55149 * 102.94321 * 218.38877 * 4 2 1 6 6 H 1.08993 * 111.00756 * 277.39214 * 5 4 2 7 7 N 1.46504 * 111.00269 * 153.57378 * 5 4 2 8 8 C 1.36943 * 119.99781 * 155.00324 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7 12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7 13 13 H 1.48504 * 109.47306 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47021 * 119.99661 * 12 10 8 15 15 H 1.48501 * 109.47039 * 240.00078 * 12 10 8 16 16 C 1.54914 * 101.58116 * 35.50250 * 5 4 2 17 17 N 1.47014 * 109.88369 * 121.09890 * 2 1 3 18 18 C 1.34781 * 125.65005 * 298.40047 * 17 2 1 19 19 O 1.21632 * 119.99625 * 359.97438 * 18 17 2 20 20 C 1.47266 * 120.00121 * 180.02562 * 18 17 2 21 21 C 1.35081 * 122.42785 * 179.73614 * 20 18 17 22 22 S 1.71008 * 109.14151 * 179.85914 * 21 20 18 23 23 C 1.75991 * 90.59251 * 0.33021 * 22 21 20 24 24 C 1.47877 * 125.32143 * 179.82860 * 23 22 21 25 25 C 1.46863 * 127.13905 * 359.67742 * 24 23 22 26 26 C 1.34299 * 106.00648 * 179.87005 * 25 24 23 27 27 O 1.34174 * 109.05262 * 0.40165 * 26 25 24 28 28 C 1.34002 * 110.80082 * 359.73376 * 27 26 25 29 29 N 1.29878 * 109.36251 * 359.80136 * 23 22 21 30 30 H 1.08999 * 109.47575 * 181.09658 * 1 2 3 31 31 H 1.09008 * 109.46550 * 301.09615 * 1 2 3 32 32 H 1.09003 * 109.47111 * 61.08992 * 1 2 3 33 33 H 1.09007 * 110.71733 * 100.02519 * 4 2 1 34 34 H 1.08999 * 110.71890 * 336.75990 * 4 2 1 35 35 H 0.97000 * 120.00410 * 335.00650 * 7 5 4 36 36 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 37 37 H 1.09004 * 110.36203 * 81.82860 * 16 5 4 38 38 H 1.08995 * 110.36707 * 204.14386 * 16 5 4 39 39 H 1.08000 * 125.43105 * 359.97438 * 21 20 18 40 40 H 1.08002 * 126.99555 * 0.02760 * 25 24 23 41 41 H 1.07999 * 125.47163 * 180.10474 * 26 25 24 42 42 H 1.08005 * 125.78772 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2428 5 6 3.2875 -1.5143 -0.6926 6 1 4.1654 -0.8692 -0.6612 7 7 3.5529 -2.7197 -1.4818 8 6 4.8162 -3.2467 -1.5230 9 1 5.6169 -2.7735 -0.9740 10 6 5.0689 -4.3854 -2.2755 11 7 4.0933 -4.9618 -2.9450 12 14 6.7937 -5.0999 -2.3380 13 1 7.7030 -4.2717 -1.5056 14 1 6.7729 -6.4900 -1.8160 15 1 7.2767 -5.1055 -3.7422 16 6 2.8145 -1.8795 0.7367 17 7 2.0300 -0.7141 1.1838 18 6 1.8073 -0.3622 2.4657 19 8 1.1415 0.6237 2.7187 20 6 2.3711 -1.1708 3.5598 21 6 2.1832 -0.8604 4.8609 22 16 2.9773 -2.0205 5.8345 23 6 3.5370 -2.8696 4.3982 24 6 4.3682 -4.0926 4.3975 25 6 4.8821 -4.8161 5.5677 26 6 5.5775 -5.8578 5.0830 27 8 5.5383 -5.8249 3.7423 28 6 4.8208 -4.7778 3.3128 29 7 3.1053 -2.2546 3.3388 30 1 -0.3634 -1.0274 0.0197 31 1 -0.3633 0.5308 0.8801 32 1 -0.3633 0.4968 -0.8996 33 1 2.3528 -0.0460 -2.0202 34 1 1.3049 -1.4459 -1.6183 35 1 2.8339 -3.1445 -1.9753 36 1 4.2698 -5.7577 -3.4705 37 1 2.1885 -2.7715 0.7127 38 1 3.6716 -2.0340 1.3920 39 1 1.6195 -0.0154 5.2280 40 1 4.7296 -4.5634 6.6066 41 1 6.0902 -6.5999 5.6770 42 1 4.6331 -4.5216 2.2805 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989567708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:13 Heat of formation + Delta-G solvation = 50.339046 kcal Electronic energy + Delta-G solvation = -28056.941514 eV Core-core repulsion = 24131.364281 eV Total energy + Delta-G solvation = -3925.577233 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.50611 -40.52212 -38.87710 -37.24322 -34.18327 -33.56178 -31.64030 -31.33508 -30.74128 -29.15970 -28.38797 -25.99683 -25.36879 -24.10916 -23.36667 -21.81636 -21.15662 -20.20524 -19.77572 -18.99927 -18.14635 -17.64539 -17.23350 -16.16831 -16.07757 -16.00290 -15.51439 -15.09838 -14.84906 -14.28311 -14.02412 -13.70597 -13.61795 -13.38784 -13.26715 -13.08653 -12.97632 -12.58241 -12.31542 -12.26253 -12.11565 -11.99786 -11.62622 -11.14516 -11.01406 -10.80957 -10.63841 -10.57787 -10.25751 -10.01757 -9.91083 -9.77563 -9.68673 -9.60894 -9.18400 -8.96387 -8.41089 -8.17320 -7.05995 -5.84292 -3.14373 0.24953 1.06253 1.47324 1.57830 1.87868 2.71462 2.95698 3.24190 3.39144 3.45939 3.47473 3.52215 3.78337 4.51163 4.62496 4.67680 4.86680 5.02207 5.11037 5.17771 5.23142 5.28856 5.32294 5.52489 5.55074 5.63069 5.74232 5.80892 5.87555 5.90357 6.03648 6.13158 6.16776 6.21311 6.35089 6.40951 6.54000 6.63238 6.82006 6.92093 6.94826 7.40418 7.64943 7.81867 8.31947 8.35159 9.45378 10.00032 10.35451 11.37856 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.007126 B = 0.005199 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3928.536302 B = 5384.141018 C = 9009.640996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.138 3.862 3 H 0.073 0.927 4 C -0.138 4.138 5 C 0.168 3.832 6 H 0.065 0.935 7 N -0.711 5.711 8 C -0.244 4.244 9 H 0.072 0.928 10 C -0.008 4.008 11 N -0.929 5.929 12 Si 0.903 3.097 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.291 1.291 16 C 0.079 3.921 17 N -0.589 5.589 18 C 0.601 3.399 19 O -0.550 6.550 20 C 0.028 3.972 21 C -0.225 4.225 22 S 0.162 5.838 23 C 0.139 3.861 24 C -0.151 4.151 25 C -0.199 4.199 26 C -0.032 4.032 27 O -0.172 6.172 28 C 0.057 3.943 29 N -0.431 5.431 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.387 0.613 36 H 0.256 0.744 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.189 0.811 40 H 0.154 0.846 41 H 0.207 0.793 42 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.799 3.244 17.856 18.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.034 3.966 3 H 0.091 0.909 4 C -0.177 4.177 5 C 0.056 3.944 6 H 0.083 0.917 7 N -0.350 5.350 8 C -0.375 4.375 9 H 0.090 0.910 10 C -0.204 4.204 11 N -0.577 5.577 12 Si 0.734 3.266 13 H -0.204 1.204 14 H -0.217 1.217 15 H -0.218 1.218 16 C -0.047 4.047 17 N -0.321 5.321 18 C 0.386 3.614 19 O -0.429 6.429 20 C -0.108 4.108 21 C -0.367 4.367 22 S 0.421 5.579 23 C -0.137 4.137 24 C -0.156 4.156 25 C -0.220 4.220 26 C -0.098 4.098 27 O -0.066 6.066 28 C -0.017 4.017 29 N -0.145 5.145 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.221 0.779 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.206 0.794 40 H 0.172 0.828 41 H 0.223 0.777 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -1.625 3.225 18.432 18.782 hybrid contribution 0.144 0.050 -0.681 0.698 sum -1.481 3.275 17.751 18.111 Atomic orbital electron populations 1.22129 0.95086 1.02245 1.02379 1.21574 0.94285 0.96107 0.84598 0.90890 1.23061 0.99396 0.99670 0.95584 1.21371 0.94498 0.89438 0.89082 0.91657 1.42300 1.09568 1.27773 1.55395 1.19292 0.86804 1.06858 1.24571 0.90958 1.24732 0.97434 0.98421 0.99838 1.69663 1.30677 1.22435 1.34914 0.86179 0.84092 0.78925 0.77378 1.20441 1.21707 1.21846 1.23710 0.95557 0.86648 0.98772 1.48412 1.50816 1.28918 1.03910 1.16765 0.80186 0.83482 0.80934 1.90759 1.41251 1.27358 1.83517 1.20112 1.01977 0.95329 0.93354 1.26387 1.07419 1.06427 0.96505 1.83684 1.44441 1.17854 1.11918 1.24943 1.00735 0.98082 0.89905 1.19004 1.06213 0.96488 0.93937 1.22692 1.03427 0.97194 0.98637 1.23890 1.03763 1.01333 0.80833 1.83990 1.57429 1.42430 1.22780 1.24720 0.91681 0.85109 1.00154 1.67356 1.11114 1.06948 1.29128 0.92526 0.91650 0.91798 0.90366 0.90406 0.77908 0.93431 0.91619 0.88823 0.79409 0.82819 0.77679 0.75999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.09 37.16 0.34 -1.95 16 2 C 0.14 2.15 3.46 -66.95 -0.23 1.91 16 3 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 4 C -0.14 -2.23 6.12 -24.90 -0.15 -2.38 16 5 C 0.17 3.23 3.71 -65.78 -0.24 2.98 16 6 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 7 N -0.71 -16.67 5.24 -51.35 -0.27 -16.94 16 8 C -0.24 -6.34 9.96 -15.06 -0.15 -6.49 16 9 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 10 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 11 N -0.93 -26.79 13.06 55.49 0.72 -26.06 16 12 Si 0.90 21.41 29.55 -169.99 -5.02 16.38 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 C 0.08 1.43 5.71 -2.53 -0.01 1.41 16 17 N -0.59 -10.09 3.06 -164.33 -0.50 -10.59 16 18 C 0.60 10.53 7.62 -12.59 -0.10 10.44 16 19 O -0.55 -10.38 15.70 5.25 0.08 -10.30 16 20 C 0.03 0.44 6.57 -84.92 -0.56 -0.12 16 21 C -0.23 -2.90 10.56 29.61 0.31 -2.59 16 22 S 0.16 1.71 23.07 -107.50 -2.48 -0.77 16 23 C 0.14 1.89 7.46 -14.43 -0.11 1.78 16 24 C -0.15 -1.92 6.32 -103.25 -0.65 -2.57 16 25 C -0.20 -1.93 11.04 -37.48 -0.41 -2.35 16 26 C -0.03 -0.29 12.04 29.34 0.35 0.06 16 27 O -0.17 -2.14 10.54 6.86 0.07 -2.07 16 28 C 0.06 0.77 12.05 29.95 0.36 1.13 16 29 N -0.43 -6.76 7.21 -8.11 -0.06 -6.82 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 1.01 6.90 -51.92 -0.36 0.65 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 34 H 0.08 1.27 7.71 -51.93 -0.40 0.87 16 35 H 0.39 9.70 7.76 -40.82 -0.32 9.38 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.09 1.75 5.99 -51.93 -0.31 1.44 16 39 H 0.19 2.14 7.99 -52.49 -0.42 1.72 16 40 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.21 1.01 8.06 -52.49 -0.42 0.58 16 42 H 0.22 3.13 8.06 -52.48 -0.42 2.70 16 LS Contribution 371.46 15.07 5.60 5.60 Total: -1.00 -31.18 371.46 -8.37 -39.54 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -5.15 Total: 11.07 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -1.35 Total: 0.97 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -0.11 Total: -60.42 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.15 Total: -12.37 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.48 Total: -0.77 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.18 -8.37 -39.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989567708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.882 kcal (2) G-P(sol) polarization free energy of solvation -31.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds