Wall clock time and date at job start Wed Apr 1 2020 05:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.88880 * 2 1 4 4 C 1.54912 * 111.00796 * 123.88215 * 2 1 3 5 5 N 1.47424 * 104.83319 * 155.08170 * 4 2 1 6 6 C 1.34776 * 125.64837 * 155.90740 * 5 4 2 7 7 O 1.21638 * 119.99752 * 0.02562 * 6 5 4 8 8 C 1.47294 * 119.99915 * 180.02562 * 6 5 4 9 9 C 1.35178 * 122.41375 * 179.97438 * 8 6 5 10 10 S 1.70996 * 109.15909 * 180.02562 * 9 8 6 11 11 C 1.75993 * 90.59857 * 0.02562 * 10 9 8 12 12 C 1.47143 * 125.32991 * 179.97438 * 11 10 9 13 13 C 1.36239 * 125.95906 * 359.69238 * 12 11 10 14 14 C 1.40770 * 106.72054 * 179.91009 * 13 12 11 15 15 C 1.34834 * 107.07550 * 0.35087 * 14 13 12 16 16 O 1.34250 * 108.71965 * 359.78638 * 15 14 13 17 17 N 1.30123 * 109.34145 * 359.73580 * 11 10 9 18 18 C 1.47023 * 108.70235 * 335.87439 * 5 4 2 19 19 C 1.54320 * 107.27576 * 1.05739 * 18 5 4 20 20 H 1.09003 * 110.71896 * 140.55076 * 19 18 5 21 21 N 1.46499 * 110.72303 * 263.83262 * 19 18 5 22 22 C 1.36936 * 119.99668 * 268.52297 * 21 19 18 23 23 H 1.08005 * 119.99701 * 359.97438 * 22 21 19 24 24 C 1.38809 * 120.00220 * 179.97438 * 22 21 19 25 25 N 1.31618 * 120.00294 * 179.97438 * 24 22 21 26 26 Si 1.86805 * 119.99893 * 359.97438 * 24 22 21 27 27 H 1.48495 * 109.47414 * 89.99590 * 26 24 22 28 28 H 1.48495 * 109.47170 * 210.00044 * 26 24 22 29 29 H 1.48511 * 109.46775 * 329.99993 * 26 24 22 30 30 H 1.09002 * 109.47153 * 297.56874 * 1 2 3 31 31 H 1.09001 * 109.46832 * 177.57065 * 1 2 3 32 32 H 1.09004 * 109.47261 * 57.57047 * 1 2 3 33 33 H 1.08992 * 110.36777 * 273.92592 * 4 2 1 34 34 H 1.09005 * 110.36251 * 36.13876 * 4 2 1 35 35 H 1.07997 * 125.41898 * 0.03057 * 9 8 6 36 36 H 1.07997 * 126.63617 * 0.02562 * 13 12 11 37 37 H 1.08004 * 126.46165 * 180.13820 * 14 13 12 38 38 H 1.07995 * 125.64298 * 179.77749 * 15 14 13 39 39 H 1.09006 * 109.88301 * 120.47721 * 18 5 4 40 40 H 1.09003 * 109.88253 * 241.48112 * 18 5 4 41 41 H 0.97000 * 120.00135 * 88.51658 * 21 19 18 42 42 H 0.96998 * 120.00057 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0853 -0.8062 1.2006 5 7 3.4272 -1.2428 0.7737 6 6 4.4477 -1.5610 1.5944 7 8 4.3003 -1.4995 2.8003 8 6 5.7416 -1.9832 1.0312 9 6 6.7973 -2.3127 1.8085 10 16 8.1156 -2.7473 0.8098 11 6 7.1463 -2.4525 -0.6293 12 6 7.6103 -2.6166 -2.0160 13 6 8.8552 -3.0139 -2.4013 14 6 8.8561 -3.0346 -3.8089 15 6 7.6292 -2.6463 -4.2114 16 8 6.8795 -2.3946 -3.1265 17 7 5.9536 -2.0715 -0.2750 18 6 3.4674 -1.2743 -0.6957 19 6 2.0861 -0.8083 -1.2020 20 1 2.1922 -0.1705 -2.0796 21 7 1.2268 -1.9579 -1.4956 22 6 1.2058 -2.4928 -2.7560 23 1 1.8225 -2.0669 -3.5337 24 6 0.3919 -3.5824 -3.0341 25 7 0.3714 -4.0962 -4.2457 26 14 -0.6741 -4.3194 -1.6888 27 1 -1.9982 -3.6472 -1.6824 28 1 -0.8571 -5.7711 -1.9418 29 1 -0.0143 -4.1256 -0.3725 30 1 -0.3633 0.4756 0.9110 31 1 -0.3633 -1.0268 -0.0436 32 1 -0.3634 0.5511 -0.8674 33 1 2.1560 -0.1713 2.0837 34 1 1.4509 -1.6689 1.4042 35 1 6.8067 -2.3031 2.8884 36 1 9.6809 -3.2660 -1.7525 37 1 9.6845 -3.3067 -4.4463 38 1 7.3035 -2.5529 -5.2368 39 1 4.2426 -0.6000 -1.0599 40 1 3.6678 -2.2892 -1.0393 41 1 0.6727 -2.3402 -0.7972 42 1 -0.1976 -4.8573 -4.4401 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001055017607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:35 Heat of formation + Delta-G solvation = 61.260004 kcal Electronic energy + Delta-G solvation = -28123.841742 eV Core-core repulsion = 24198.738077 eV Total energy + Delta-G solvation = -3925.103665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.66610 -40.56072 -38.96572 -37.52882 -34.03648 -33.31371 -32.43316 -31.86301 -30.78237 -29.10712 -28.07978 -27.14635 -25.12255 -23.73445 -22.96368 -22.05337 -21.66005 -20.29865 -19.42146 -19.14164 -18.38679 -17.86134 -17.52538 -16.34385 -16.24254 -15.91155 -15.71254 -15.20685 -14.82537 -14.25640 -14.16842 -13.86433 -13.72708 -13.23946 -13.17247 -13.10522 -12.83344 -12.66450 -12.65503 -12.39649 -12.13375 -11.94359 -11.66036 -11.40484 -11.02373 -10.82180 -10.52502 -10.37296 -10.30689 -10.12507 -10.04253 -9.93466 -9.90030 -9.56736 -9.52781 -8.96922 -8.38732 -8.15786 -7.31024 -5.79020 -3.14730 -0.01020 0.71871 1.27190 1.35353 2.11722 2.56527 2.90019 3.21381 3.35820 3.38945 3.43458 3.44259 3.72782 4.53885 4.57186 4.71040 4.78437 4.89315 4.98123 5.06105 5.15590 5.20630 5.37002 5.47685 5.52313 5.59174 5.64738 5.72090 5.79151 5.83718 5.92078 6.11580 6.18153 6.19382 6.22207 6.36604 6.56031 6.58655 6.74569 6.84431 6.86614 7.28579 7.75555 7.97040 8.26675 8.39914 9.17355 9.89858 10.08801 11.39107 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009145 B = 0.004241 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3061.189233 B = 6600.827769 C = 8581.858207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.118 4.118 3 H 0.084 0.916 4 C 0.113 3.887 5 N -0.589 5.589 6 C 0.600 3.400 7 O -0.550 6.550 8 C 0.027 3.973 9 C -0.220 4.220 10 S 0.212 5.788 11 C 0.108 3.892 12 C 0.049 3.951 13 C -0.170 4.170 14 C -0.219 4.219 15 C -0.006 4.006 16 O -0.142 6.142 17 N -0.408 5.408 18 C 0.087 3.913 19 C 0.175 3.825 20 H 0.082 0.918 21 N -0.736 5.736 22 C -0.243 4.243 23 H 0.093 0.907 24 C 0.009 3.991 25 N -0.931 5.931 26 Si 0.877 3.123 27 H -0.282 1.282 28 H -0.291 1.291 29 H -0.278 1.278 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.195 0.805 36 H 0.154 0.846 37 H 0.156 0.844 38 H 0.211 0.789 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.362 0.638 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.256 5.654 6.718 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.138 4.138 3 H 0.102 0.898 4 C -0.009 4.009 5 N -0.319 5.319 6 C 0.385 3.615 7 O -0.430 6.430 8 C -0.110 4.110 9 C -0.362 4.362 10 S 0.469 5.531 11 C -0.167 4.167 12 C -0.005 4.005 13 C -0.193 4.193 14 C -0.238 4.238 15 C -0.077 4.077 16 O -0.035 6.035 17 N -0.123 5.123 18 C -0.038 4.038 19 C 0.063 3.937 20 H 0.100 0.900 21 N -0.378 5.378 22 C -0.372 4.372 23 H 0.111 0.889 24 C -0.187 4.187 25 N -0.579 5.579 26 Si 0.707 3.293 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.212 0.788 36 H 0.171 0.829 37 H 0.173 0.827 38 H 0.228 0.772 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.197 0.803 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 18.520 5.495 6.979 20.540 hybrid contribution -1.396 -0.642 1.119 1.901 sum 17.124 4.854 8.098 19.554 Atomic orbital electron populations 1.21563 0.93555 1.02712 1.01138 1.22698 0.96800 0.98922 0.95424 0.89798 1.22320 0.82558 0.98374 0.97694 1.48274 1.11290 1.63600 1.08763 1.16705 0.81670 0.77940 0.85179 1.90782 1.82801 1.55752 1.13633 1.20141 0.96878 1.06495 0.87454 1.26611 0.96656 1.05966 1.06952 1.83600 1.13580 1.60378 0.95526 1.24421 0.92376 1.05271 0.94608 1.18828 0.90326 1.08110 0.83259 1.21763 0.96140 1.05356 0.96087 1.21715 0.99028 1.08499 0.94594 1.24456 0.90559 1.01451 0.91206 1.84284 1.39559 1.66489 1.13216 1.67492 1.16709 1.13229 1.14879 1.23286 0.99960 1.03540 0.76996 1.21258 0.88240 0.89143 0.95042 0.90049 1.42800 1.50007 1.34600 1.10409 1.19070 1.21388 1.10259 0.86510 0.88939 1.24618 0.99778 0.98294 0.95982 1.69686 1.42898 1.26437 1.18864 0.86670 0.81289 0.79010 0.82298 1.20890 1.21720 1.20444 0.93335 0.91997 0.91744 0.90816 0.91427 0.78812 0.82874 0.82664 0.77212 0.91634 0.89623 0.80329 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 8.98 37.16 0.33 -1.63 16 2 C -0.12 -1.83 3.51 -88.47 -0.31 -2.14 16 3 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.11 1.86 6.33 -2.53 -0.02 1.85 16 5 N -0.59 -10.64 3.33 -171.83 -0.57 -11.21 16 6 C 0.60 10.93 7.83 -12.58 -0.10 10.83 16 7 O -0.55 -10.81 16.91 5.24 0.09 -10.72 16 8 C 0.03 0.43 6.57 -84.93 -0.56 -0.13 16 9 C -0.22 -2.73 10.56 29.64 0.31 -2.41 16 10 S 0.21 2.06 22.93 -107.50 -2.46 -0.40 16 11 C 0.11 1.49 7.46 -14.66 -0.11 1.38 16 12 C 0.05 0.64 7.24 -36.69 -0.27 0.38 16 13 C -0.17 -1.71 10.63 -39.34 -0.42 -2.13 16 14 C -0.22 -2.00 10.88 -39.83 -0.43 -2.43 16 15 C -0.01 -0.06 12.08 29.53 0.36 0.30 16 16 O -0.14 -2.07 10.67 4.53 0.05 -2.02 16 17 N -0.41 -6.70 7.57 -8.28 -0.06 -6.77 16 18 C 0.09 1.63 5.19 -3.07 -0.02 1.62 16 19 C 0.17 3.29 3.39 -66.09 -0.22 3.07 16 20 H 0.08 1.53 8.09 -51.93 -0.42 1.11 16 21 N -0.74 -16.86 4.27 -51.65 -0.22 -17.08 16 22 C -0.24 -6.63 10.44 -15.06 -0.16 -6.79 16 23 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 24 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 25 N -0.93 -28.83 13.97 55.49 0.78 -28.06 16 26 Si 0.88 22.10 27.73 -169.99 -4.71 17.39 16 27 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 29 H -0.28 -6.75 6.52 56.52 0.37 -6.38 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 1.05 6.27 -51.93 -0.33 0.73 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.13 8.04 -51.93 -0.42 0.71 16 34 H 0.07 1.18 8.03 -51.93 -0.42 0.76 16 35 H 0.19 2.07 7.99 -52.49 -0.42 1.65 16 36 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.16 0.96 8.06 -52.48 -0.42 0.54 16 38 H 0.21 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.07 1.18 7.50 -51.93 -0.39 0.79 16 40 H 0.09 1.88 7.51 -51.93 -0.39 1.49 16 41 H 0.36 8.33 4.11 -40.82 -0.17 8.17 16 42 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 367.22 15.07 5.53 5.53 Total: -1.00 -34.36 367.22 -8.36 -42.72 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -5.08 Total: 8.69 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -1.70 Total: 1.92 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: -0.08 Total: -63.11 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.14 Total: -12.74 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.71 Total: 17.39 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.46 Total: -0.40 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.36 -8.36 -42.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055017607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.982 kcal (2) G-P(sol) polarization free energy of solvation -34.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds