Wall clock time and date at job start Wed Apr 1 2020 05:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.88880 * 2 1 4 4 C 1.54912 * 111.00796 * 123.88215 * 2 1 3 5 5 N 1.47424 * 104.83319 * 155.08170 * 4 2 1 6 6 C 1.34776 * 125.64837 * 155.90740 * 5 4 2 7 7 O 1.21638 * 119.99752 * 0.02562 * 6 5 4 8 8 C 1.47294 * 119.99915 * 180.02562 * 6 5 4 9 9 C 1.35178 * 122.41375 * 179.97438 * 8 6 5 10 10 S 1.70996 * 109.15909 * 180.02562 * 9 8 6 11 11 C 1.75993 * 90.59857 * 0.02562 * 10 9 8 12 12 C 1.47143 * 125.32991 * 179.97438 * 11 10 9 13 13 C 1.36239 * 125.95906 * 359.69238 * 12 11 10 14 14 C 1.40770 * 106.72054 * 179.91009 * 13 12 11 15 15 C 1.34834 * 107.07550 * 0.35087 * 14 13 12 16 16 O 1.34250 * 108.71965 * 359.78638 * 15 14 13 17 17 N 1.30123 * 109.34145 * 359.73580 * 11 10 9 18 18 C 1.47023 * 108.70235 * 335.87439 * 5 4 2 19 19 C 1.54320 * 107.27576 * 1.05739 * 18 5 4 20 20 H 1.09003 * 110.71896 * 140.55076 * 19 18 5 21 21 N 1.46499 * 110.72303 * 263.83262 * 19 18 5 22 22 C 1.36936 * 119.99668 * 268.52297 * 21 19 18 23 23 H 1.08005 * 119.99701 * 359.97438 * 22 21 19 24 24 C 1.38809 * 120.00220 * 179.97438 * 22 21 19 25 25 N 1.31618 * 120.00294 * 179.97438 * 24 22 21 26 26 Si 1.86805 * 119.99893 * 359.97438 * 24 22 21 27 27 H 1.48495 * 109.47414 * 89.99590 * 26 24 22 28 28 H 1.48495 * 109.47170 * 210.00044 * 26 24 22 29 29 H 1.48511 * 109.46775 * 329.99993 * 26 24 22 30 30 H 1.09002 * 109.47153 * 297.56874 * 1 2 3 31 31 H 1.09001 * 109.46832 * 177.57065 * 1 2 3 32 32 H 1.09004 * 109.47261 * 57.57047 * 1 2 3 33 33 H 1.08992 * 110.36777 * 273.92592 * 4 2 1 34 34 H 1.09005 * 110.36251 * 36.13876 * 4 2 1 35 35 H 1.07997 * 125.41898 * 0.03057 * 9 8 6 36 36 H 1.07997 * 126.63617 * 0.02562 * 13 12 11 37 37 H 1.08004 * 126.46165 * 180.13820 * 14 13 12 38 38 H 1.07995 * 125.64298 * 179.77749 * 15 14 13 39 39 H 1.09006 * 109.88301 * 120.47721 * 18 5 4 40 40 H 1.09003 * 109.88253 * 241.48112 * 18 5 4 41 41 H 0.97000 * 120.00135 * 88.51658 * 21 19 18 42 42 H 0.96998 * 120.00057 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0853 -0.8062 1.2006 5 7 3.4272 -1.2428 0.7737 6 6 4.4477 -1.5610 1.5944 7 8 4.3003 -1.4995 2.8003 8 6 5.7416 -1.9832 1.0312 9 6 6.7973 -2.3127 1.8085 10 16 8.1156 -2.7473 0.8098 11 6 7.1463 -2.4525 -0.6293 12 6 7.6103 -2.6166 -2.0160 13 6 8.8552 -3.0139 -2.4013 14 6 8.8561 -3.0346 -3.8089 15 6 7.6292 -2.6463 -4.2114 16 8 6.8795 -2.3946 -3.1265 17 7 5.9536 -2.0715 -0.2750 18 6 3.4674 -1.2743 -0.6957 19 6 2.0861 -0.8083 -1.2020 20 1 2.1922 -0.1705 -2.0796 21 7 1.2268 -1.9579 -1.4956 22 6 1.2058 -2.4928 -2.7560 23 1 1.8225 -2.0669 -3.5337 24 6 0.3919 -3.5824 -3.0341 25 7 0.3714 -4.0962 -4.2457 26 14 -0.6741 -4.3194 -1.6888 27 1 -1.9982 -3.6472 -1.6824 28 1 -0.8571 -5.7711 -1.9418 29 1 -0.0143 -4.1256 -0.3725 30 1 -0.3633 0.4756 0.9110 31 1 -0.3633 -1.0268 -0.0436 32 1 -0.3634 0.5511 -0.8674 33 1 2.1560 -0.1713 2.0837 34 1 1.4509 -1.6689 1.4042 35 1 6.8067 -2.3031 2.8884 36 1 9.6809 -3.2660 -1.7525 37 1 9.6845 -3.3067 -4.4463 38 1 7.3035 -2.5529 -5.2368 39 1 4.2426 -0.6000 -1.0599 40 1 3.6678 -2.2892 -1.0393 41 1 0.6727 -2.3402 -0.7972 42 1 -0.1976 -4.8573 -4.4401 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001055017607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:34 Heat of formation + Delta-G solvation = 38.127941 kcal Electronic energy + Delta-G solvation = -28124.844823 eV Core-core repulsion = 24198.738077 eV Total energy + Delta-G solvation = -3926.106746 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.52253 -41.79225 -40.22971 -38.95201 -35.86261 -34.18447 -34.01838 -32.87568 -32.58740 -30.03703 -29.72477 -28.35540 -26.18206 -25.56199 -24.32707 -23.04257 -22.83877 -21.27014 -20.92883 -20.22579 -19.86718 -19.45468 -18.56548 -17.65102 -17.24779 -17.13619 -16.92735 -16.55831 -16.20613 -15.93679 -15.74336 -15.14933 -14.75240 -14.66118 -14.57977 -14.27735 -14.01184 -13.84532 -13.66498 -13.62026 -13.44839 -13.25496 -13.06699 -13.01142 -12.88658 -12.42127 -12.15138 -11.98579 -11.64095 -11.51668 -11.35154 -11.31255 -11.16845 -10.87856 -10.85440 -10.43052 -9.79007 -9.33876 -9.08551 -8.02762 -5.35238 -0.94748 -0.16665 0.30384 0.31619 1.18267 1.33307 1.35475 1.41283 1.70009 1.91980 2.10777 2.20356 2.45149 2.73596 3.26383 3.37224 3.53723 3.65453 3.82729 3.93332 3.98394 3.99663 4.06571 4.13691 4.33341 4.49526 4.57557 4.59983 4.63040 4.74413 4.80423 4.91942 4.95553 4.99261 5.01645 5.17144 5.20610 5.28230 5.47296 5.50566 5.78175 6.01545 6.21043 6.29214 6.36460 6.91233 7.06127 7.81004 7.99929 9.18687 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009145 B = 0.004241 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3061.189233 B = 6600.827769 C = 8581.858207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.101 4.101 3 H 0.112 0.888 4 C 0.110 3.890 5 N -0.595 5.595 6 C 0.595 3.405 7 O -0.571 6.571 8 C -0.011 4.011 9 C -0.221 4.221 10 S 0.332 5.668 11 C 0.078 3.922 12 C 0.007 3.993 13 C -0.152 4.152 14 C -0.212 4.212 15 C -0.022 4.022 16 O -0.186 6.186 17 N -0.452 5.452 18 C 0.111 3.889 19 C 0.164 3.836 20 H 0.081 0.919 21 N -0.736 5.736 22 C -0.221 4.221 23 H 0.063 0.937 24 C -0.055 4.055 25 N -0.980 5.980 26 Si 0.941 3.059 27 H -0.270 1.270 28 H -0.299 1.299 29 H -0.266 1.266 30 H 0.079 0.921 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.211 0.789 36 H 0.185 0.815 37 H 0.190 0.810 38 H 0.233 0.767 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.364 0.636 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.317 6.127 8.542 22.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.120 4.120 3 H 0.130 0.870 4 C -0.012 4.012 5 N -0.326 5.326 6 C 0.382 3.618 7 O -0.452 6.452 8 C -0.147 4.147 9 C -0.363 4.363 10 S 0.590 5.410 11 C -0.196 4.196 12 C -0.046 4.046 13 C -0.175 4.175 14 C -0.231 4.231 15 C -0.092 4.092 16 O -0.081 6.081 17 N -0.167 5.167 18 C -0.015 4.015 19 C 0.054 3.946 20 H 0.099 0.901 21 N -0.379 5.379 22 C -0.352 4.352 23 H 0.081 0.919 24 C -0.247 4.247 25 N -0.630 5.630 26 Si 0.769 3.231 27 H -0.196 1.196 28 H -0.226 1.226 29 H -0.191 1.191 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.228 0.772 36 H 0.203 0.797 37 H 0.207 0.793 38 H 0.250 0.750 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.199 0.801 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 20.617 6.009 8.840 23.223 hybrid contribution -1.777 -0.768 0.506 2.001 sum 18.840 5.241 9.346 21.674 Atomic orbital electron populations 1.21555 0.92691 1.01656 1.02829 1.22657 0.97389 0.99416 0.92569 0.87007 1.22420 0.81790 0.98322 0.98667 1.48349 1.12026 1.63964 1.08222 1.17116 0.82462 0.77228 0.85007 1.90743 1.83460 1.56780 1.14231 1.19941 0.96963 1.09700 0.88110 1.27003 0.97121 1.04020 1.08205 1.83072 1.09692 1.57093 0.91114 1.24838 0.92956 1.05311 0.96473 1.19249 0.91587 1.10784 0.83012 1.22217 0.95455 1.02832 0.96972 1.22155 0.99219 1.07108 0.94609 1.25167 0.91196 1.01311 0.91494 1.84243 1.41520 1.67756 1.14626 1.67412 1.18855 1.15066 1.15417 1.22819 0.99574 1.01280 0.77781 1.21480 0.88009 0.88318 0.96758 0.90125 1.42741 1.50738 1.35630 1.08758 1.19019 1.19321 1.09378 0.87499 0.91930 1.25309 1.01953 0.99323 0.98131 1.69851 1.44600 1.27426 1.21155 0.85632 0.79998 0.77511 0.79949 1.19578 1.22567 1.19133 0.90204 0.94195 0.91660 0.89167 0.92593 0.77188 0.79735 0.79303 0.75038 0.91273 0.93384 0.80098 0.93458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 8.98 71.98 0.65 -2.96 16 2 C -0.10 -2.97 3.51 -9.40 -0.03 -3.00 16 3 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 4 C 0.11 3.53 6.33 86.86 0.55 4.08 16 5 N -0.60 -21.73 3.33 -815.78 -2.71 -24.44 16 6 C 0.59 21.90 7.83 86.63 0.68 22.58 16 7 O -0.57 -22.32 16.91 -4.15 -0.07 -22.39 16 8 C -0.01 -0.34 6.57 40.70 0.27 -0.08 16 9 C -0.22 -5.16 10.56 67.11 0.71 -4.45 16 10 S 0.33 5.59 22.93 -56.49 -1.30 4.30 16 11 C 0.08 2.13 7.46 87.29 0.65 2.79 16 12 C 0.01 0.17 7.24 24.14 0.17 0.35 16 13 C -0.15 -2.73 10.63 22.42 0.24 -2.49 16 14 C -0.21 -3.42 10.88 22.11 0.24 -3.18 16 15 C -0.02 -0.45 12.08 67.04 0.81 0.36 16 16 O -0.19 -5.68 10.67 -6.72 -0.07 -5.75 16 17 N -0.45 -15.31 7.57 -180.10 -1.36 -16.68 16 18 C 0.11 4.30 5.19 86.73 0.45 4.75 16 19 C 0.16 6.27 3.39 46.18 0.16 6.42 16 20 H 0.08 3.09 8.09 -2.39 -0.02 3.07 16 21 N -0.74 -34.25 4.27 -317.32 -1.35 -35.61 16 22 C -0.22 -12.52 10.44 84.03 0.88 -11.64 16 23 H 0.06 3.86 8.06 -2.91 -0.02 3.84 16 24 C -0.06 -3.29 5.50 84.86 0.47 -2.82 16 25 N -0.98 -62.85 13.97 21.65 0.30 -62.55 16 26 Si 0.94 46.53 27.73 68.60 1.90 48.44 16 27 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 28 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 29 H -0.27 -12.43 6.52 99.48 0.65 -11.78 16 30 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.04 1.29 6.27 -2.39 -0.01 1.27 16 32 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.09 2.61 8.04 -2.39 -0.02 2.59 16 34 H 0.06 1.92 8.03 -2.38 -0.02 1.90 16 35 H 0.21 4.04 7.99 -2.91 -0.02 4.02 16 36 H 0.19 1.93 8.06 -2.91 -0.02 1.91 16 37 H 0.19 1.65 8.06 -2.91 -0.02 1.63 16 38 H 0.23 3.23 8.06 -2.91 -0.02 3.21 16 39 H 0.07 2.61 7.50 -2.38 -0.02 2.59 16 40 H 0.05 2.23 7.51 -2.39 -0.02 2.22 16 41 H 0.36 16.73 4.11 -92.71 -0.38 16.35 16 42 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -79.19 367.22 2.85 -76.35 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 0.63 Total: 27.64 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 6.88 Total: 10.70 kcal Atomic # 7 Polarization: -134.14 SS G_CDS: -5.13 Total: -139.27 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.14 Total: -28.15 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.90 Total: 48.44 kcal Atomic # 16 Polarization: 5.59 SS G_CDS: -1.30 Total: 4.30 kcal Total: -79.19 2.85 -76.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055017607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.474 kcal (2) G-P(sol) polarization free energy of solvation -79.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds