Wall clock time and date at job start Wed Apr 1 2020 04:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35901 * 117.00045 * 2 1 4 4 C 1.38807 * 120.01925 * 0.02562 * 3 2 1 5 5 C 1.38163 * 120.06994 * 179.97438 * 4 3 2 6 6 C 1.38184 * 120.12061 * 359.72061 * 5 4 3 7 7 C 1.38841 * 120.04215 * 0.55468 * 6 5 4 8 8 N 1.40198 * 120.03468 * 179.72299 * 7 6 5 9 9 C 1.37855 * 126.53771 * 129.41105 * 8 7 6 10 10 C 1.34391 * 106.95237 * 180.26133 * 9 8 7 11 11 N 1.34378 * 108.40526 * 0.02562 * 10 9 8 12 12 C 1.31276 * 109.35891 * 359.97438 * 11 10 9 13 13 S 1.76202 * 125.82632 * 180.02562 * 12 11 10 14 14 C 1.81004 * 99.99592 * 359.97438 * 13 12 11 15 15 C 1.50704 * 109.47105 * 180.02562 * 14 13 12 16 16 O 1.21283 * 119.99993 * 359.97438 * 15 14 13 17 17 N 1.34772 * 119.99786 * 180.02562 * 15 14 13 18 18 C 1.46503 * 119.99543 * 179.97438 * 17 15 14 19 19 C 1.50704 * 109.47029 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99778 * 359.97438 * 19 18 17 21 21 C 1.37881 * 120.00101 * 180.02562 * 19 18 17 22 22 N 1.31509 * 119.99803 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99766 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47433 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47007 * 119.99894 * 23 21 19 26 26 H 1.48502 * 109.46503 * 239.99515 * 23 21 19 27 27 C 1.38589 * 120.02028 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.46774 * 300.00236 * 1 2 3 29 29 H 1.08994 * 109.47033 * 59.99685 * 1 2 3 30 30 H 1.08995 * 109.46933 * 179.97438 * 1 2 3 31 31 H 1.07993 * 119.96520 * 359.97438 * 4 3 2 32 32 H 1.07995 * 119.93879 * 180.02562 * 5 4 3 33 33 H 1.08001 * 119.97397 * 180.29927 * 6 5 4 34 34 H 1.08004 * 126.52502 * 0.24598 * 9 8 7 35 35 H 1.07996 * 125.80087 * 180.02562 * 10 9 8 36 36 H 1.09001 * 109.47097 * 300.00135 * 14 13 12 37 37 H 1.08995 * 109.47446 * 60.00075 * 14 13 12 38 38 H 0.96998 * 120.00503 * 359.97438 * 17 15 14 39 39 H 1.08996 * 109.47000 * 299.99371 * 18 17 15 40 40 H 1.09003 * 109.47389 * 60.00195 * 18 17 15 41 41 H 0.97002 * 120.00012 * 179.97438 * 22 21 19 42 42 H 1.07997 * 120.06402 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2905 2.3753 0.0005 5 6 1.9166 3.6069 0.0011 6 6 3.2964 3.6833 0.0069 7 6 4.0569 2.5217 0.0006 8 7 5.4567 2.5995 0.0007 9 6 6.3154 1.9384 0.8527 10 6 7.5634 2.3006 0.5100 11 7 7.4880 3.1593 -0.5209 12 6 6.2283 3.3486 -0.8383 13 16 5.6354 4.3921 -2.1284 14 6 7.2062 5.0238 -2.7685 15 6 6.9393 5.9667 -3.9135 16 8 5.7993 6.1892 -4.2627 17 7 7.9674 6.5617 -4.5500 18 6 7.7079 7.4778 -5.6634 19 6 9.0157 8.0040 -6.1963 20 1 9.9470 7.6879 -5.7499 21 6 9.0233 8.8897 -7.2530 22 7 7.8893 9.2749 -7.7962 23 14 10.6445 9.5412 -7.9139 24 1 11.7666 8.9578 -7.1357 25 1 10.7838 9.1636 -9.3432 26 1 10.6715 11.0206 -7.7878 27 6 3.4300 1.2839 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2120 2.3185 0.0005 32 1 1.3267 4.5114 0.0019 33 1 3.7833 4.6473 0.0122 34 1 6.0380 1.2590 1.6451 35 1 8.4725 1.9594 0.9827 36 1 7.7340 5.5550 -1.9764 37 1 7.8174 4.1916 -3.1176 38 1 8.8792 6.3835 -4.2710 39 1 7.1799 6.9468 -6.4553 40 1 7.0971 8.3104 -5.3142 41 1 7.8946 9.8983 -8.5394 42 1 4.0196 0.3790 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016816169.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:16 Heat of formation + Delta-G solvation = 21.162331 kcal Electronic energy + Delta-G solvation = -26022.211398 eV Core-core repulsion = 22095.368968 eV Total energy + Delta-G solvation = -3926.842431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.27649 -40.46238 -38.81636 -37.98612 -34.27366 -34.10840 -32.41192 -31.25112 -30.36551 -29.70500 -29.20561 -27.75200 -26.80698 -23.72589 -23.21384 -22.67495 -21.50547 -21.27886 -19.91721 -19.36286 -17.44406 -16.92491 -16.84710 -16.55511 -16.23606 -16.09644 -15.73915 -15.46778 -15.11012 -15.03282 -14.49505 -14.38830 -14.17207 -13.90032 -13.89084 -13.41031 -13.19287 -12.87307 -12.75430 -12.69408 -12.27746 -11.99274 -11.72580 -11.63759 -11.49503 -10.97138 -10.91607 -10.57785 -10.53110 -10.33985 -10.27663 -9.55849 -9.40743 -9.28876 -9.16327 -8.77311 -8.69332 -7.97899 -7.42095 -6.18235 -4.25225 0.52037 0.90631 1.13531 1.75589 2.12463 2.39685 2.84866 2.92477 3.19269 3.20839 3.23756 3.30932 3.34192 3.99650 4.28374 4.35096 4.44794 4.54970 4.60676 4.67690 4.73103 4.83775 4.95249 5.01560 5.08744 5.18072 5.25399 5.28955 5.34200 5.36180 5.56848 5.66425 5.73120 5.91262 6.03270 6.05324 6.45949 6.79478 6.88844 7.24154 7.32442 7.47631 7.62357 7.65433 7.93625 8.51181 8.71302 8.97116 9.41118 10.91971 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.018337 B = 0.001994 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.586661 B =14038.031548 C =15165.083816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.142 3.858 4 C -0.202 4.202 5 C -0.057 4.057 6 C -0.144 4.144 7 C 0.158 3.842 8 N -0.405 5.405 9 C -0.047 4.047 10 C -0.011 4.011 11 N -0.486 5.486 12 C 0.191 3.809 13 S 0.065 5.935 14 C -0.141 4.141 15 C 0.516 3.484 16 O -0.544 6.544 17 N -0.702 5.702 18 C 0.250 3.750 19 C -0.544 4.544 20 H 0.065 0.935 21 C 0.063 3.937 22 N -0.885 5.885 23 Si 0.905 3.095 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.147 4.147 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.179 0.821 35 H 0.177 0.823 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.394 0.606 39 H 0.030 0.970 40 H 0.030 0.970 41 H 0.266 0.734 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.414 -18.311 21.083 30.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.096 3.904 4 C -0.221 4.221 5 C -0.076 4.076 6 C -0.164 4.164 7 C 0.066 3.934 8 N -0.088 5.088 9 C -0.179 4.179 10 C -0.160 4.160 11 N -0.208 5.208 12 C -0.178 4.178 13 S 0.295 5.705 14 C -0.293 4.293 15 C 0.298 3.702 16 O -0.423 6.423 17 N -0.350 5.350 18 C 0.129 3.871 19 C -0.582 4.582 20 H 0.083 0.917 21 C -0.140 4.140 22 N -0.522 5.522 23 Si 0.732 3.268 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.167 4.167 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.120 0.880 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.196 0.804 35 H 0.194 0.806 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.227 0.773 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.075 0.925 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.718 -17.607 19.892 29.898 hybrid contribution 1.813 -0.345 0.644 1.954 sum -11.905 -17.952 20.536 29.761 Atomic orbital electron populations 1.23125 0.77789 1.04307 1.01663 1.86080 1.21817 1.26401 1.88503 1.18628 0.91379 0.84593 0.95793 1.21397 1.00582 0.92140 1.07941 1.20869 0.93480 0.97659 0.95600 1.21130 0.94162 0.97777 1.03345 1.17304 0.80305 0.93796 1.01948 1.42916 1.04013 1.35565 1.26266 1.22887 0.89918 1.04797 1.00341 1.22348 0.96803 0.99559 0.97252 1.70864 1.15290 1.18808 1.15823 1.26023 0.88776 1.02294 1.00726 1.86303 1.07265 1.47952 1.28973 1.23764 1.00048 1.03610 1.01850 1.19537 0.86246 0.81393 0.83040 1.90703 1.21340 1.63702 1.66572 1.46378 1.07999 1.45652 1.35007 1.19191 0.97322 0.87676 0.82912 1.21261 0.92189 1.27711 1.17074 0.91697 1.24955 0.96980 0.95920 0.96175 1.69981 1.25533 1.32719 1.23993 0.86339 0.82971 0.78686 0.78801 1.19586 1.20782 1.20785 1.20116 0.92111 0.97066 1.07420 0.92402 0.92236 0.87953 0.84653 0.84251 0.84279 0.80389 0.80628 0.86246 0.86272 0.77263 0.95243 0.95241 0.92458 0.84415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.65 10.49 -19.43 -0.20 -2.85 16 3 C 0.14 1.30 6.68 -39.24 -0.26 1.04 16 4 C -0.20 -1.56 9.04 -39.40 -0.36 -1.91 16 5 C -0.06 -0.48 10.03 -39.63 -0.40 -0.87 16 6 C -0.14 -1.51 8.87 -39.38 -0.35 -1.86 16 7 C 0.16 1.78 5.85 -83.62 -0.49 1.29 16 8 N -0.40 -5.03 2.91 -60.75 -0.18 -5.21 16 9 C -0.05 -0.49 11.32 -16.20 -0.18 -0.68 16 10 C -0.01 -0.13 11.84 -17.80 -0.21 -0.34 16 11 N -0.49 -7.05 10.60 -13.38 -0.14 -7.19 16 12 C 0.19 2.74 7.81 -88.48 -0.69 2.05 16 13 S 0.07 1.01 19.80 -107.50 -2.13 -1.12 16 14 C -0.14 -2.19 5.68 36.01 0.20 -1.98 16 15 C 0.52 10.32 7.85 -10.99 -0.09 10.23 16 16 O -0.54 -12.91 15.86 5.56 0.09 -12.82 16 17 N -0.70 -14.72 5.55 -61.47 -0.34 -15.06 16 18 C 0.25 6.56 5.43 -5.19 -0.03 6.54 16 19 C -0.54 -14.70 9.28 -34.44 -0.32 -15.02 16 20 H 0.06 1.64 7.60 -52.48 -0.40 1.24 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.88 -25.96 13.29 55.43 0.74 -25.22 16 23 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 C -0.15 -1.49 9.64 -39.26 -0.38 -1.87 16 28 H 0.06 0.18 7.66 -51.93 -0.40 -0.21 16 29 H 0.06 0.22 7.66 -51.93 -0.40 -0.17 16 30 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.14 0.69 6.29 -52.49 -0.33 0.36 16 32 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.14 1.51 7.59 -52.49 -0.40 1.11 16 34 H 0.18 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.18 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.12 1.68 8.14 -51.92 -0.42 1.26 16 37 H 0.12 1.70 8.14 -51.92 -0.42 1.28 16 38 H 0.39 7.08 8.32 -40.82 -0.34 6.74 16 39 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 380.31 15.07 5.73 5.73 Total: -1.00 -34.56 380.31 -9.31 -43.88 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -5.20 Total: 4.66 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -2.65 Total: -0.62 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.08 Total: -52.67 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.12 Total: -15.67 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.13 Total: -1.12 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.56 -9.31 -43.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016816169.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.040 kcal (2) G-P(sol) polarization free energy of solvation -34.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds