Wall clock time and date at job start Wed Apr 1 2020 04:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35901 * 117.00045 * 2 1 4 4 C 1.38807 * 120.01925 * 0.02562 * 3 2 1 5 5 C 1.38163 * 120.06994 * 179.97438 * 4 3 2 6 6 C 1.38184 * 120.12061 * 359.72061 * 5 4 3 7 7 C 1.38841 * 120.04215 * 0.55468 * 6 5 4 8 8 N 1.40198 * 120.03468 * 179.72299 * 7 6 5 9 9 C 1.37855 * 126.53771 * 129.41105 * 8 7 6 10 10 C 1.34391 * 106.95237 * 180.26133 * 9 8 7 11 11 N 1.34378 * 108.40526 * 0.02562 * 10 9 8 12 12 C 1.31276 * 109.35891 * 359.97438 * 11 10 9 13 13 S 1.76202 * 125.82632 * 180.02562 * 12 11 10 14 14 C 1.81004 * 99.99592 * 359.97438 * 13 12 11 15 15 C 1.50704 * 109.47105 * 180.02562 * 14 13 12 16 16 O 1.21283 * 119.99993 * 359.97438 * 15 14 13 17 17 N 1.34772 * 119.99786 * 180.02562 * 15 14 13 18 18 C 1.46503 * 119.99543 * 179.97438 * 17 15 14 19 19 C 1.50704 * 109.47029 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99778 * 359.97438 * 19 18 17 21 21 C 1.37881 * 120.00101 * 180.02562 * 19 18 17 22 22 N 1.31509 * 119.99803 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99766 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47433 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47007 * 119.99894 * 23 21 19 26 26 H 1.48502 * 109.46503 * 239.99515 * 23 21 19 27 27 C 1.38589 * 120.02028 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.46774 * 300.00236 * 1 2 3 29 29 H 1.08994 * 109.47033 * 59.99685 * 1 2 3 30 30 H 1.08995 * 109.46933 * 179.97438 * 1 2 3 31 31 H 1.07993 * 119.96520 * 359.97438 * 4 3 2 32 32 H 1.07995 * 119.93879 * 180.02562 * 5 4 3 33 33 H 1.08001 * 119.97397 * 180.29927 * 6 5 4 34 34 H 1.08004 * 126.52502 * 0.24598 * 9 8 7 35 35 H 1.07996 * 125.80087 * 180.02562 * 10 9 8 36 36 H 1.09001 * 109.47097 * 300.00135 * 14 13 12 37 37 H 1.08995 * 109.47446 * 60.00075 * 14 13 12 38 38 H 0.96998 * 120.00503 * 359.97438 * 17 15 14 39 39 H 1.08996 * 109.47000 * 299.99371 * 18 17 15 40 40 H 1.09003 * 109.47389 * 60.00195 * 18 17 15 41 41 H 0.97002 * 120.00012 * 179.97438 * 22 21 19 42 42 H 1.07997 * 120.06402 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2905 2.3753 0.0005 5 6 1.9166 3.6069 0.0011 6 6 3.2964 3.6833 0.0069 7 6 4.0569 2.5217 0.0006 8 7 5.4567 2.5995 0.0007 9 6 6.3154 1.9384 0.8527 10 6 7.5634 2.3006 0.5100 11 7 7.4880 3.1593 -0.5209 12 6 6.2283 3.3486 -0.8383 13 16 5.6354 4.3921 -2.1284 14 6 7.2062 5.0238 -2.7685 15 6 6.9393 5.9667 -3.9135 16 8 5.7993 6.1892 -4.2627 17 7 7.9674 6.5617 -4.5500 18 6 7.7079 7.4778 -5.6634 19 6 9.0157 8.0040 -6.1963 20 1 9.9470 7.6879 -5.7499 21 6 9.0233 8.8897 -7.2530 22 7 7.8893 9.2749 -7.7962 23 14 10.6445 9.5412 -7.9139 24 1 11.7666 8.9578 -7.1357 25 1 10.7838 9.1636 -9.3432 26 1 10.6715 11.0206 -7.7878 27 6 3.4300 1.2839 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2120 2.3185 0.0005 32 1 1.3267 4.5114 0.0019 33 1 3.7833 4.6473 0.0122 34 1 6.0380 1.2590 1.6451 35 1 8.4725 1.9594 0.9827 36 1 7.7340 5.5550 -1.9764 37 1 7.8174 4.1916 -3.1176 38 1 8.8792 6.3835 -4.2710 39 1 7.1799 6.9468 -6.4553 40 1 7.0971 8.3104 -5.3142 41 1 7.8946 9.8983 -8.5394 42 1 4.0196 0.3790 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016816169.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:16 Heat of formation + Delta-G solvation = -0.948841 kcal Electronic energy + Delta-G solvation = -26023.170211 eV Core-core repulsion = 22095.368968 eV Total energy + Delta-G solvation = -3927.801243 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.17417 -41.10217 -40.56139 -38.64658 -36.22454 -34.93259 -34.42112 -31.92092 -31.69088 -30.78703 -30.01384 -28.75916 -28.17544 -24.75876 -24.44642 -23.95096 -22.45569 -22.17970 -21.52312 -20.21247 -18.97249 -18.02813 -17.59313 -17.53376 -17.31102 -17.26085 -16.79492 -16.74681 -16.70355 -16.13717 -15.94748 -15.27258 -15.17985 -14.88715 -14.68362 -14.58542 -14.49315 -14.21025 -14.01039 -13.79911 -13.50090 -13.22792 -12.96941 -12.88731 -12.75055 -12.25778 -12.23149 -12.05141 -11.72932 -11.46749 -11.40693 -11.23846 -11.03834 -10.83102 -10.52626 -9.93709 -9.91345 -9.38063 -8.51784 -8.29655 -6.45879 -0.22963 -0.01713 0.23063 0.87367 0.96364 1.44197 1.44809 1.54772 1.58444 1.59523 1.92686 2.28992 2.33506 2.49348 2.51244 3.05584 3.64532 3.68185 3.78559 3.92686 3.97591 4.00613 4.07975 4.22508 4.30385 4.35547 4.40563 4.40979 4.52367 4.62868 4.76998 4.87512 5.06531 5.08100 5.22699 5.24062 5.28040 5.37184 5.42588 5.61599 5.62147 5.82559 5.98522 6.28333 6.63103 6.72231 6.73873 7.19458 7.34136 8.82651 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.018337 B = 0.001994 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.586661 B =14038.031548 C =15165.083816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.138 3.862 4 C -0.194 4.194 5 C -0.057 4.057 6 C -0.161 4.161 7 C 0.137 3.863 8 N -0.403 5.403 9 C -0.034 4.034 10 C -0.028 4.028 11 N -0.505 5.505 12 C 0.167 3.833 13 S 0.042 5.958 14 C -0.123 4.123 15 C 0.517 3.483 16 O -0.583 6.583 17 N -0.697 5.697 18 C 0.266 3.734 19 C -0.557 4.557 20 H 0.084 0.916 21 C 0.004 3.996 22 N -0.929 5.929 23 Si 0.985 3.015 24 H -0.254 1.254 25 H -0.279 1.279 26 H -0.279 1.279 27 C -0.156 4.156 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.119 0.881 31 H 0.165 0.835 32 H 0.163 0.837 33 H 0.128 0.872 34 H 0.213 0.787 35 H 0.204 0.796 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.412 0.588 39 H -0.007 1.007 40 H -0.006 1.006 41 H 0.269 0.731 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.855 -19.648 22.692 32.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.244 6.244 3 C 0.092 3.908 4 C -0.213 4.213 5 C -0.075 4.075 6 C -0.181 4.181 7 C 0.046 3.954 8 N -0.086 5.086 9 C -0.166 4.166 10 C -0.176 4.176 11 N -0.228 5.228 12 C -0.201 4.201 13 S 0.272 5.728 14 C -0.274 4.274 15 C 0.302 3.698 16 O -0.465 6.465 17 N -0.346 5.346 18 C 0.144 3.856 19 C -0.595 4.595 20 H 0.102 0.898 21 C -0.195 4.195 22 N -0.568 5.568 23 Si 0.808 3.192 24 H -0.177 1.177 25 H -0.205 1.205 26 H -0.204 1.204 27 C -0.176 4.176 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.138 0.862 31 H 0.183 0.817 32 H 0.180 0.820 33 H 0.146 0.854 34 H 0.230 0.770 35 H 0.221 0.779 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.248 0.752 39 H 0.011 0.989 40 H 0.012 0.988 41 H 0.078 0.922 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.153 -18.975 21.537 31.573 hybrid contribution 1.470 -0.063 0.257 1.494 sum -11.683 -19.038 21.794 31.208 Atomic orbital electron populations 1.23445 0.75726 1.05950 1.02757 1.86067 1.23987 1.26096 1.88289 1.18755 0.91245 0.85439 0.95361 1.21721 1.02033 0.91269 1.06236 1.21176 0.92782 0.99004 0.94584 1.21202 0.95240 0.97163 1.04454 1.17478 0.79864 0.94514 1.03509 1.43064 1.04683 1.34969 1.25871 1.23531 0.89368 1.03838 0.99905 1.22904 0.98417 0.99342 0.96893 1.70796 1.15441 1.19651 1.16922 1.25633 0.89299 1.03700 1.01507 1.86323 1.07211 1.49053 1.30232 1.23524 1.00713 1.02971 1.00202 1.20190 0.85184 0.81061 0.83390 1.90683 1.23030 1.64942 1.67856 1.46081 1.09369 1.45141 1.34055 1.18642 0.96680 0.86977 0.83344 1.21649 0.92775 1.27731 1.17303 0.89752 1.26045 1.01017 0.96072 0.96405 1.70133 1.28373 1.33554 1.24715 0.85107 0.78195 0.77867 0.78034 1.17744 1.20466 1.20423 1.20171 0.92903 0.96631 1.07926 0.90876 0.91473 0.86235 0.81724 0.81979 0.85406 0.77019 0.77882 0.84400 0.84631 0.75221 0.98917 0.98828 0.92204 0.84281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 113.37 1.11 1.21 16 2 O -0.33 -5.00 10.49 -92.44 -0.97 -5.97 16 3 C 0.14 2.34 6.68 22.49 0.15 2.49 16 4 C -0.19 -2.61 9.04 22.39 0.20 -2.40 16 5 C -0.06 -0.88 10.03 22.24 0.22 -0.65 16 6 C -0.16 -3.36 8.87 22.40 0.20 -3.16 16 7 C 0.14 3.05 5.85 38.07 0.22 3.27 16 8 N -0.40 -9.81 2.91 -346.12 -1.01 -10.82 16 9 C -0.03 -0.66 11.32 82.87 0.94 0.28 16 10 C -0.03 -0.59 11.84 83.42 0.99 0.40 16 11 N -0.51 -14.22 10.60 -196.23 -2.08 -16.30 16 12 C 0.17 4.79 7.81 179.60 1.40 6.19 16 13 S 0.04 1.33 19.80 -56.49 -1.12 0.21 16 14 C -0.12 -3.79 5.68 71.24 0.40 -3.39 16 15 C 0.52 21.17 7.85 87.66 0.69 21.86 16 16 O -0.58 -28.89 15.86 -3.04 -0.05 -28.94 16 17 N -0.70 -29.71 5.55 -466.78 -2.59 -32.30 16 18 C 0.27 14.58 5.43 85.63 0.46 15.04 16 19 C -0.56 -30.28 9.28 25.60 0.24 -30.04 16 20 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 21 C 0.00 0.24 5.46 84.66 0.46 0.70 16 22 N -0.93 -55.89 13.29 21.45 0.28 -55.60 16 23 Si 0.98 42.45 29.54 68.60 2.03 44.48 16 24 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 27 C -0.16 -3.06 9.64 22.48 0.22 -2.85 16 28 H 0.07 0.25 7.66 -2.39 -0.02 0.23 16 29 H 0.07 0.33 7.66 -2.39 -0.02 0.32 16 30 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.17 1.15 6.29 -2.91 -0.02 1.14 16 32 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 33 H 0.13 2.89 7.59 -2.91 -0.02 2.87 16 34 H 0.21 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.20 2.91 8.06 -2.91 -0.02 2.89 16 36 H 0.14 3.77 8.14 -2.39 -0.02 3.75 16 37 H 0.14 3.77 8.14 -2.40 -0.02 3.75 16 38 H 0.41 14.55 8.32 -92.71 -0.77 13.78 16 39 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 40 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 41 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 42 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -77.54 380.31 2.70 -74.84 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.29 Total: 21.45 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 7.91 Total: 8.95 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -5.39 Total: -115.02 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -1.02 Total: -34.91 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -1.12 Total: 0.21 kcal Total: -77.54 2.70 -74.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016816169.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.894 kcal (2) G-P(sol) polarization free energy of solvation -77.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds