Wall clock time and date at job start Wed Apr 1 2020 04:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00091 * 2 1 4 4 C 1.53001 * 109.47308 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47183 * 180.02562 * 4 3 2 6 6 C 1.35823 * 126.05651 * 125.27165 * 5 4 3 7 7 C 1.35771 * 107.56037 * 180.18013 * 6 5 4 8 8 N 1.40711 * 126.08007 * 179.87757 * 7 6 5 9 9 C 1.34784 * 119.99527 * 179.71079 * 8 7 6 10 10 O 1.21634 * 120.00220 * 0.02562 * 9 8 7 11 11 C 1.47416 * 119.99660 * 179.97438 * 9 8 7 12 12 C 1.39683 * 120.21513 * 0.02562 * 11 9 8 13 13 C 1.37807 * 119.93862 * 180.29672 * 12 11 9 14 14 C 1.38661 * 120.37604 * 359.42345 * 13 12 11 15 15 C 1.37916 * 120.44265 * 0.60135 * 14 13 12 16 16 C 1.39106 * 120.04719 * 359.67832 * 15 14 13 17 17 S 1.76196 * 120.18857 * 180.02562 * 16 15 14 18 18 C 1.76199 * 100.00151 * 6.84443 * 17 16 15 19 19 H 1.07999 * 119.99774 * 5.65136 * 18 17 16 20 20 C 1.38808 * 120.00236 * 185.65515 * 18 17 16 21 21 N 1.31549 * 119.99925 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99860 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47303 * 60.00095 * 22 20 18 24 24 H 1.48503 * 109.47280 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47205 * 299.99829 * 22 20 18 26 26 C 1.40267 * 107.83365 * 359.60681 * 7 6 5 27 27 N 1.30820 * 108.33821 * 0.24801 * 26 7 6 28 28 H 1.08997 * 109.47257 * 300.00321 * 1 2 3 29 29 H 1.09005 * 109.47055 * 59.99430 * 1 2 3 30 30 H 1.08997 * 109.47506 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47076 * 59.99668 * 3 2 1 32 32 H 1.09001 * 109.47516 * 300.00249 * 3 2 1 33 33 H 1.08997 * 109.47092 * 59.99886 * 4 3 2 34 34 H 1.09001 * 109.46673 * 300.00179 * 4 3 2 35 35 H 1.07998 * 126.21893 * 0.02742 * 6 5 4 36 36 H 0.96996 * 120.00432 * 359.70580 * 8 7 6 37 37 H 1.08000 * 120.03132 * 0.02562 * 12 11 9 38 38 H 1.07995 * 119.81042 * 179.72346 * 13 12 11 39 39 H 1.08002 * 119.77928 * 180.32896 * 14 13 12 40 40 H 1.07996 * 119.97467 * 179.70036 * 15 14 13 41 41 H 0.96999 * 119.99811 * 180.02562 * 21 20 18 42 42 H 1.08006 * 125.82643 * 180.20599 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1313 2.5230 0.0013 6 6 5.0353 2.9952 0.8983 7 6 5.3289 4.2740 0.5494 8 7 6.2224 5.1311 1.2181 9 6 6.4269 6.3819 0.7596 10 8 5.8388 6.7700 -0.2318 11 6 7.3625 7.2800 1.4605 12 6 8.0398 6.8391 2.5998 13 6 8.9085 7.6855 3.2541 14 6 9.1245 8.9710 2.7813 15 6 8.4637 9.4227 1.6582 16 6 7.5785 8.5855 0.9870 17 16 6.7328 9.1584 -0.4487 18 6 7.5282 10.7148 -0.6716 19 1 8.3631 10.9893 -0.0439 20 6 7.0816 11.5881 -1.6538 21 7 6.0643 11.2540 -2.4179 22 14 7.9244 13.2384 -1.8895 23 1 9.3542 13.0204 -2.2264 24 1 7.2626 13.9790 -2.9935 25 1 7.8261 14.0280 -0.6358 26 6 4.5879 4.5868 -0.5997 27 7 3.8733 3.5407 -0.9260 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8465 -0.8899 33 1 3.8575 0.6436 -0.8891 34 1 3.8567 0.6439 0.8909 35 1 5.4442 2.4528 1.7379 36 1 6.6910 4.8218 2.0090 37 1 7.8795 5.8374 2.9701 38 1 9.4277 7.3440 4.1373 39 1 9.8114 9.6245 3.2986 40 1 8.6339 10.4270 1.2993 41 1 5.7525 11.8641 -3.1045 42 1 4.6040 5.5304 -1.1250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058458749.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:17 Heat of formation + Delta-G solvation = 15.827006 kcal Electronic energy + Delta-G solvation = -26353.499371 eV Core-core repulsion = 22426.425584 eV Total energy + Delta-G solvation = -3927.073788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.35736 -40.78682 -39.05148 -38.83749 -35.92650 -34.75384 -34.40022 -32.20707 -31.75789 -30.89646 -29.19258 -27.82387 -27.11285 -24.98999 -24.46290 -23.45171 -22.52302 -22.05102 -20.95796 -19.82966 -18.77551 -18.38788 -17.46066 -17.33828 -17.28603 -17.01726 -16.49699 -16.46932 -16.00760 -15.89962 -15.58223 -15.29510 -15.26730 -14.86720 -14.62133 -14.44609 -14.26713 -13.79724 -13.58540 -13.27695 -13.05201 -12.96338 -12.88413 -12.66843 -12.52391 -12.33651 -12.05409 -11.73821 -11.71955 -11.46233 -11.37165 -11.21342 -10.76868 -10.40395 -10.37804 -9.88920 -9.81820 -8.72942 -8.44064 -8.40047 -6.22367 0.01738 0.57607 0.81717 1.27200 1.32901 1.38261 1.44344 1.60795 1.66396 2.17209 2.27810 2.29818 2.78234 2.89559 3.08480 3.26238 3.70108 3.82721 3.90933 4.00657 4.07083 4.11567 4.25706 4.30254 4.39744 4.46566 4.51951 4.57851 4.65290 4.67996 4.73407 4.81456 4.82709 4.88325 5.13876 5.21130 5.38561 5.48898 5.59762 5.71121 5.79981 5.98926 6.11367 6.11789 6.18900 6.54411 6.72977 6.97226 7.37009 8.61104 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014356 B = 0.002366 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.876913 B =11833.075875 C =13575.206629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.054 3.946 4 C 0.143 3.857 5 N -0.370 5.370 6 C 0.049 3.951 7 C -0.013 4.013 8 N -0.625 5.625 9 C 0.545 3.455 10 O -0.540 6.540 11 C -0.178 4.178 12 C -0.052 4.052 13 C -0.157 4.157 14 C -0.069 4.069 15 C -0.176 4.176 16 C -0.072 4.072 17 S 0.068 5.932 18 C -0.602 4.602 19 H 0.095 0.905 20 C 0.023 3.977 21 N -0.905 5.905 22 Si 0.992 3.008 23 H -0.262 1.262 24 H -0.275 1.275 25 H -0.260 1.260 26 C 0.029 3.971 27 N -0.317 5.317 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.107 0.893 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.095 0.905 34 H 0.143 0.857 35 H 0.234 0.766 36 H 0.426 0.574 37 H 0.167 0.833 38 H 0.168 0.832 39 H 0.148 0.852 40 H 0.118 0.882 41 H 0.275 0.725 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.022 -21.936 14.858 26.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.023 4.023 4 C 0.022 3.978 5 N -0.156 5.156 6 C -0.099 4.099 7 C -0.117 4.117 8 N -0.273 5.273 9 C 0.335 3.665 10 O -0.419 6.419 11 C -0.191 4.191 12 C -0.072 4.072 13 C -0.180 4.180 14 C -0.090 4.090 15 C -0.201 4.201 16 C -0.191 4.191 17 S 0.327 5.673 18 C -0.749 4.749 19 H 0.112 0.888 20 C -0.182 4.182 21 N -0.540 5.540 22 Si 0.813 3.187 23 H -0.186 1.186 24 H -0.200 1.200 25 H -0.184 1.184 26 C -0.158 4.158 27 N -0.140 5.140 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.125 0.875 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.114 0.886 34 H 0.161 0.839 35 H 0.250 0.750 36 H 0.266 0.734 37 H 0.184 0.816 38 H 0.185 0.815 39 H 0.166 0.834 40 H 0.135 0.865 41 H 0.084 0.916 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.370 -22.726 12.250 26.036 hybrid contribution 1.548 2.577 0.655 3.076 sum -1.822 -20.149 12.905 23.997 Atomic orbital electron populations 1.22965 0.78919 1.04302 1.00747 1.87737 1.21806 1.26871 1.95645 1.22586 0.93472 0.85123 1.01169 1.21583 0.91656 0.77422 1.07094 1.48450 1.34134 1.12013 1.21026 1.22566 0.96071 0.93044 0.98209 1.17905 1.02320 0.92589 0.98893 1.42378 1.43211 1.11008 1.30687 1.18530 0.82171 0.81829 0.83941 1.90697 1.49406 1.74679 1.27118 1.19308 1.05191 0.93027 1.01598 1.21489 0.93578 1.00612 0.91476 1.21338 1.00939 0.93432 1.02246 1.21556 0.96730 0.97102 0.93629 1.21440 0.99901 1.00252 0.98521 1.22987 0.99464 0.96500 1.00112 1.84908 1.43352 1.15505 1.23514 1.24224 1.21040 1.06163 1.23437 0.88756 1.26144 0.95142 1.02986 0.93957 1.70123 1.25504 1.38466 1.19872 0.85104 0.78608 0.76449 0.78560 1.18634 1.20021 1.18404 1.24327 0.95958 0.98307 0.97165 1.77322 1.24607 0.97110 1.14960 0.93106 0.93871 0.87459 0.92530 0.93665 0.88648 0.83889 0.74985 0.73399 0.81595 0.81498 0.83383 0.86456 0.91570 0.80918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.40 -6.45 10.70 -148.98 -1.59 -8.05 16 3 C 0.05 0.90 6.12 71.98 0.44 1.34 16 4 C 0.14 2.01 6.89 86.38 0.59 2.61 16 5 N -0.37 -8.00 3.70 -346.97 -1.29 -9.29 16 6 C 0.05 0.88 11.52 83.50 0.96 1.85 16 7 C -0.01 -0.35 6.90 37.64 0.26 -0.09 16 8 N -0.62 -16.45 5.42 -306.97 -1.66 -18.11 16 9 C 0.55 20.68 7.72 86.66 0.67 21.35 16 10 O -0.54 -26.01 10.92 -4.14 -0.05 -26.05 16 11 C -0.18 -6.55 5.89 -19.95 -0.12 -6.67 16 12 C -0.05 -1.27 9.53 22.52 0.21 -1.06 16 13 C -0.16 -3.54 10.02 22.27 0.22 -3.31 16 14 C -0.07 -1.99 10.03 22.29 0.22 -1.77 16 15 C -0.18 -7.15 9.22 22.40 0.21 -6.94 16 16 C -0.07 -3.32 6.14 23.04 0.14 -3.18 16 17 S 0.07 3.90 18.56 -56.49 -1.05 2.85 16 18 C -0.60 -35.15 9.00 67.96 0.61 -34.54 16 19 H 0.09 5.17 4.98 -2.91 -0.01 5.16 16 20 C 0.02 1.35 5.49 84.87 0.47 1.81 16 21 N -0.90 -55.87 13.22 21.65 0.29 -55.58 16 22 Si 0.99 44.18 29.55 68.60 2.03 46.21 16 23 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 25 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 26 C 0.03 1.03 10.84 85.34 0.92 1.95 16 27 N -0.32 -10.14 12.41 -56.76 -0.70 -10.84 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.04 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.14 0.92 8.07 -2.39 -0.02 0.90 16 35 H 0.23 1.35 8.06 -2.91 -0.02 1.33 16 36 H 0.43 6.80 6.85 -92.71 -0.64 6.17 16 37 H 0.17 2.23 6.40 -2.91 -0.02 2.21 16 38 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 39 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 40 H 0.12 5.20 5.03 -2.91 -0.01 5.19 16 41 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 42 H 0.17 7.50 5.91 -2.91 -0.02 7.48 16 Total: -1.00 -85.62 370.72 3.48 -82.14 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.44 Total: 21.83 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 7.07 Total: -25.10 kcal Atomic # 7 Polarization: -90.46 SS G_CDS: -3.37 Total: -93.83 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -1.64 Total: -34.10 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -1.05 Total: 2.85 kcal Total: -85.62 3.48 -82.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058458749.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.963 kcal (2) G-P(sol) polarization free energy of solvation -85.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds