Wall clock time and date at job start Wed Apr 1 2020 04:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46506 * 120.00243 * 2 1 4 4 C 1.50700 * 109.47177 * 269.99976 * 3 2 1 5 5 H 1.07997 * 119.99865 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99725 * 180.02562 * 4 3 2 7 7 N 1.31521 * 119.99824 * 180.02562 * 6 4 3 8 8 Si 1.86802 * 120.00339 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.47105 * 89.99943 * 8 6 4 10 10 H 1.48498 * 109.47270 * 210.00086 * 8 6 4 11 11 H 1.48504 * 109.46769 * 330.00080 * 8 6 4 12 12 C 1.34777 * 120.00004 * 180.02562 * 2 1 3 13 13 O 1.21282 * 120.00380 * 180.02562 * 12 2 1 14 14 C 1.50701 * 119.99901 * 359.97438 * 12 2 1 15 15 O 1.42898 * 109.47123 * 179.97438 * 14 12 2 16 16 C 1.35993 * 117.00126 * 180.02562 * 15 14 12 17 17 C 1.38570 * 120.07150 * 0.27756 * 16 15 14 18 18 C 1.38244 * 119.99485 * 180.27403 * 17 16 15 19 19 C 1.38248 * 120.15181 * 359.72506 * 18 17 16 20 20 C 1.38243 * 120.14349 * 359.97438 * 19 18 17 21 21 C 1.38565 * 120.00269 * 0.02562 * 20 19 18 22 22 O 1.35987 * 120.07608 * 180.02562 * 21 20 19 23 23 C 1.42905 * 117.00096 * 359.97438 * 22 21 20 24 24 C 1.52997 * 109.47264 * 180.02562 * 23 22 21 25 25 F 1.39897 * 109.47422 * 60.00018 * 24 23 22 26 26 F 1.39895 * 109.47162 * 180.02562 * 24 23 22 27 27 F 1.39900 * 109.47010 * 299.99709 * 24 23 22 28 28 H 1.09000 * 109.47325 * 269.99933 * 1 2 3 29 29 H 1.09009 * 109.47130 * 29.99815 * 1 2 3 30 30 H 1.09002 * 109.47217 * 149.99404 * 1 2 3 31 31 H 1.09000 * 109.46803 * 30.00235 * 3 2 1 32 32 H 1.09005 * 109.46872 * 149.99876 * 3 2 1 33 33 H 0.97000 * 119.99584 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.46790 * 60.00522 * 14 12 2 35 35 H 1.08997 * 109.46991 * 300.00194 * 14 12 2 36 36 H 1.07992 * 120.00311 * 0.02562 * 17 16 15 37 37 H 1.07998 * 119.92090 * 179.74527 * 18 17 16 38 38 H 1.08001 * 119.92720 * 180.02562 * 19 18 17 39 39 H 1.08006 * 119.99913 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.47103 * 300.00410 * 23 22 21 41 41 H 1.09004 * 109.47054 * 59.99914 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.3458 3.2574 -2.9127 8 14 3.7340 3.9287 -0.2528 9 1 5.1070 3.5067 0.1238 10 1 3.7500 5.3553 -0.6647 11 1 2.8273 3.7596 0.9111 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1673 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 8 2.3139 -3.5585 -0.0017 16 6 1.7941 -4.8151 -0.0024 17 6 0.4206 -4.9984 -0.0078 18 6 -0.1061 -6.2766 -0.0028 19 6 0.7346 -7.3740 0.0019 20 6 2.1058 -7.1982 0.0009 21 6 2.6403 -5.9198 -0.0041 22 8 3.9889 -5.7451 -0.0055 23 6 4.7960 -6.9244 -0.0011 24 6 6.2744 -6.5307 -0.0028 25 9 6.5556 -5.7690 1.1364 26 9 7.0644 -7.6853 0.0009 27 9 6.5552 -5.7779 -1.1481 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8901 -0.5138 30 1 -0.3634 -0.8899 -0.5139 31 1 1.6084 2.0284 0.5139 32 1 3.1499 1.1383 0.5139 33 1 3.8233 4.0829 -3.0898 34 1 0.7584 -2.5298 -0.8903 35 1 0.7590 -2.5302 0.8897 36 1 -0.2384 -4.1428 -0.0118 37 1 -1.1768 -6.4180 -0.0028 38 1 0.3192 -8.3710 0.0054 39 1 2.7604 -8.0572 0.0041 40 1 4.5775 -7.5108 0.8914 41 1 4.5766 -7.5181 -0.8885 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067911651.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:53 Heat of formation + Delta-G solvation = -216.910100 kcal Electronic energy + Delta-G solvation = -30292.904502 eV Core-core repulsion = 25338.836114 eV Total energy + Delta-G solvation = -4954.068388 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.33461 -47.91017 -47.74545 -40.88478 -39.44699 -38.35629 -37.02362 -34.96774 -32.58884 -31.38868 -30.65422 -29.77932 -28.92656 -27.42375 -25.87017 -24.29771 -22.78320 -22.62113 -21.79044 -19.45390 -18.86019 -18.70641 -18.53795 -18.04093 -17.37054 -17.02091 -16.59620 -16.45920 -15.87812 -15.81389 -15.32316 -15.07694 -14.87846 -14.68609 -14.64100 -14.43099 -14.22336 -13.94834 -13.92522 -13.91422 -13.56400 -13.13357 -12.98629 -12.60082 -12.41336 -12.36821 -12.22314 -12.08952 -11.63172 -11.61808 -11.56764 -11.41270 -11.19879 -10.90207 -10.53432 -10.16047 -9.55898 -9.08444 -9.08111 -8.59199 -8.10235 -7.79740 -6.09059 -4.08539 0.95477 1.14671 1.95265 2.77206 2.79540 3.18932 3.30007 3.35721 3.38343 3.41480 3.41980 3.64849 3.92287 4.04991 4.38679 4.39587 4.48672 4.55475 4.61578 4.71085 4.86782 4.95591 5.08074 5.10450 5.12732 5.24401 5.31017 5.48376 5.74340 5.82714 5.94628 6.06312 6.17474 6.32419 6.57571 6.68497 6.90188 7.21070 7.34472 7.58694 8.10611 8.44807 8.84458 8.94326 9.50432 11.04244 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010402 B = 0.002912 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.239689 B = 9613.976359 C =11728.941660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.595 5.595 3 C 0.217 3.783 4 C -0.532 4.532 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.508 3.492 13 O -0.512 6.512 14 C 0.042 3.958 15 O -0.275 6.275 16 C 0.117 3.883 17 C -0.176 4.176 18 C -0.108 4.108 19 C -0.123 4.123 20 C -0.171 4.171 21 C 0.095 3.905 22 O -0.283 6.283 23 C 0.013 3.987 24 C 0.465 3.535 25 F -0.170 7.170 26 F -0.175 7.175 27 F -0.169 7.169 28 H 0.049 0.951 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.033 0.967 32 H 0.038 0.962 33 H 0.265 0.735 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.139 0.861 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.107 0.893 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.077 -25.284 8.187 27.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.329 5.329 3 C 0.097 3.903 4 C -0.571 4.571 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.704 3.296 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.292 3.708 13 O -0.386 6.386 14 C -0.037 4.037 15 O -0.186 6.186 16 C 0.071 3.929 17 C -0.195 4.195 18 C -0.126 4.126 19 C -0.141 4.141 20 C -0.189 4.189 21 C 0.051 3.949 22 O -0.197 6.197 23 C -0.064 4.064 24 C 0.410 3.590 25 F -0.152 7.152 26 F -0.157 7.157 27 F -0.150 7.150 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.157 0.843 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.125 0.875 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.972 -24.844 8.077 26.798 hybrid contribution 0.204 0.492 0.475 0.714 sum -5.768 -24.353 8.552 26.447 Atomic orbital electron populations 1.21733 0.80779 1.03235 1.00697 1.47751 1.06330 1.06579 1.72266 1.19714 0.92545 0.79444 0.98561 1.21317 1.37283 1.07277 0.91188 0.90704 1.24859 0.95136 0.97343 0.95635 1.69899 1.41278 1.23577 1.18674 0.86843 0.80250 0.79721 0.82831 1.19798 1.21024 1.19043 1.19692 0.88174 0.84212 0.78684 1.90746 1.13402 1.86583 1.47867 1.22685 0.92132 0.85886 1.02993 1.86326 1.33718 1.10633 1.87952 1.18351 0.90784 0.83911 0.99886 1.21171 0.92462 0.99269 1.06595 1.20906 1.00092 0.91541 1.00110 1.20820 0.92285 0.99184 1.01798 1.21032 0.96922 0.94312 1.06667 1.18124 0.81237 0.91968 1.03599 1.86250 1.14546 1.29251 1.89630 1.23776 0.86562 0.89535 1.06558 1.19946 0.89274 0.75033 0.74698 1.93258 1.94760 1.76373 1.50787 1.93211 1.76402 1.49724 1.96357 1.93273 1.94746 1.76791 1.50212 0.93292 0.90062 0.92356 0.94867 0.94364 0.92504 0.89251 0.89506 0.84327 0.85308 0.85401 0.84806 0.87520 0.87456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.24 59.84 0.61 1.74 16 2 N -0.60 -12.11 2.86 -182.95 -0.52 -12.63 16 3 C 0.22 5.32 4.23 -5.19 -0.02 5.30 16 4 C -0.53 -15.39 9.94 -34.44 -0.34 -15.73 16 5 H 0.07 2.37 8.06 -52.49 -0.42 1.94 16 6 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 7 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 8 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 9 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 12 C 0.51 10.66 7.75 -10.98 -0.09 10.57 16 13 O -0.51 -13.49 16.08 -14.36 -0.23 -13.72 16 14 C 0.04 0.63 3.77 36.01 0.14 0.76 16 15 O -0.27 -4.77 9.45 -47.34 -0.45 -5.22 16 16 C 0.12 1.60 6.70 -39.12 -0.26 1.34 16 17 C -0.18 -1.79 9.04 -39.46 -0.36 -2.15 16 18 C -0.11 -0.88 10.04 -39.58 -0.40 -1.28 16 19 C -0.12 -0.94 10.04 -39.58 -0.40 -1.33 16 20 C -0.17 -1.48 9.04 -39.46 -0.36 -1.84 16 21 C 0.10 1.19 6.70 -39.12 -0.26 0.93 16 22 O -0.28 -3.86 9.81 -34.20 -0.34 -4.20 16 23 C 0.01 0.12 4.70 37.16 0.17 0.29 16 24 C 0.46 5.05 3.32 37.16 0.12 5.18 16 25 F -0.17 -2.24 17.26 2.25 0.04 -2.20 16 26 F -0.18 -1.65 17.32 2.25 0.04 -1.61 16 27 F -0.17 -2.29 17.26 2.25 0.04 -2.25 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 1.20 8.07 -51.92 -0.42 0.78 16 30 H 0.06 0.64 6.44 -51.93 -0.33 0.31 16 31 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 32 H 0.04 1.01 6.85 -51.93 -0.36 0.65 16 33 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 34 H 0.09 1.12 6.91 -51.93 -0.36 0.76 16 35 H 0.09 0.99 7.64 -51.93 -0.40 0.59 16 36 H 0.14 1.13 6.30 -52.49 -0.33 0.80 16 37 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.13 0.74 6.30 -52.48 -0.33 0.41 16 40 H 0.11 0.61 7.66 -51.93 -0.40 0.21 16 41 H 0.11 0.63 7.66 -51.93 -0.40 0.24 16 LS Contribution 364.78 15.07 5.50 5.50 Total: -1.00 -38.26 364.78 -5.90 -44.16 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -4.55 Total: -3.62 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -1.53 Total: 5.82 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.25 Total: -39.69 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -1.01 Total: -23.14 kcal Atomic # 9 Polarization: -6.17 SS G_CDS: 0.12 Total: -6.05 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -38.26 -5.90 -44.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067911651.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.746 kcal (2) G-P(sol) polarization free energy of solvation -38.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds