Wall clock time and date at job start Wed Apr 1 2020 04:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46506 * 120.00243 * 2 1 4 4 C 1.50700 * 109.47177 * 269.99976 * 3 2 1 5 5 H 1.07997 * 119.99865 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99725 * 180.02562 * 4 3 2 7 7 N 1.31521 * 119.99824 * 180.02562 * 6 4 3 8 8 Si 1.86802 * 120.00339 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.47105 * 89.99943 * 8 6 4 10 10 H 1.48498 * 109.47270 * 210.00086 * 8 6 4 11 11 H 1.48504 * 109.46769 * 330.00080 * 8 6 4 12 12 C 1.34777 * 120.00004 * 180.02562 * 2 1 3 13 13 O 1.21282 * 120.00380 * 180.02562 * 12 2 1 14 14 C 1.50701 * 119.99901 * 359.97438 * 12 2 1 15 15 O 1.42898 * 109.47123 * 179.97438 * 14 12 2 16 16 C 1.35993 * 117.00126 * 180.02562 * 15 14 12 17 17 C 1.38570 * 120.07150 * 0.27756 * 16 15 14 18 18 C 1.38244 * 119.99485 * 180.27403 * 17 16 15 19 19 C 1.38248 * 120.15181 * 359.72506 * 18 17 16 20 20 C 1.38243 * 120.14349 * 359.97438 * 19 18 17 21 21 C 1.38565 * 120.00269 * 0.02562 * 20 19 18 22 22 O 1.35987 * 120.07608 * 180.02562 * 21 20 19 23 23 C 1.42905 * 117.00096 * 359.97438 * 22 21 20 24 24 C 1.52997 * 109.47264 * 180.02562 * 23 22 21 25 25 F 1.39897 * 109.47422 * 60.00018 * 24 23 22 26 26 F 1.39895 * 109.47162 * 180.02562 * 24 23 22 27 27 F 1.39900 * 109.47010 * 299.99709 * 24 23 22 28 28 H 1.09000 * 109.47325 * 269.99933 * 1 2 3 29 29 H 1.09009 * 109.47130 * 29.99815 * 1 2 3 30 30 H 1.09002 * 109.47217 * 149.99404 * 1 2 3 31 31 H 1.09000 * 109.46803 * 30.00235 * 3 2 1 32 32 H 1.09005 * 109.46872 * 149.99876 * 3 2 1 33 33 H 0.97000 * 119.99584 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.46790 * 60.00522 * 14 12 2 35 35 H 1.08997 * 109.46991 * 300.00194 * 14 12 2 36 36 H 1.07992 * 120.00311 * 0.02562 * 17 16 15 37 37 H 1.07998 * 119.92090 * 179.74527 * 18 17 16 38 38 H 1.08001 * 119.92720 * 180.02562 * 19 18 17 39 39 H 1.08006 * 119.99913 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.47103 * 300.00410 * 23 22 21 41 41 H 1.09004 * 109.47054 * 59.99914 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.3458 3.2574 -2.9127 8 14 3.7340 3.9287 -0.2528 9 1 5.1070 3.5067 0.1238 10 1 3.7500 5.3553 -0.6647 11 1 2.8273 3.7596 0.9111 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1673 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 8 2.3139 -3.5585 -0.0017 16 6 1.7941 -4.8151 -0.0024 17 6 0.4206 -4.9984 -0.0078 18 6 -0.1061 -6.2766 -0.0028 19 6 0.7346 -7.3740 0.0019 20 6 2.1058 -7.1982 0.0009 21 6 2.6403 -5.9198 -0.0041 22 8 3.9889 -5.7451 -0.0055 23 6 4.7960 -6.9244 -0.0011 24 6 6.2744 -6.5307 -0.0028 25 9 6.5556 -5.7690 1.1364 26 9 7.0644 -7.6853 0.0009 27 9 6.5552 -5.7779 -1.1481 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8901 -0.5138 30 1 -0.3634 -0.8899 -0.5139 31 1 1.6084 2.0284 0.5139 32 1 3.1499 1.1383 0.5139 33 1 3.8233 4.0829 -3.0898 34 1 0.7584 -2.5298 -0.8903 35 1 0.7590 -2.5302 0.8897 36 1 -0.2384 -4.1428 -0.0118 37 1 -1.1768 -6.4180 -0.0028 38 1 0.3192 -8.3710 0.0054 39 1 2.7604 -8.0572 0.0041 40 1 4.5775 -7.5108 0.8914 41 1 4.5766 -7.5181 -0.8885 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067911651.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:52 Heat of formation + Delta-G solvation = -243.407717 kcal Electronic energy + Delta-G solvation = -30294.053525 eV Core-core repulsion = 25338.836114 eV Total energy + Delta-G solvation = -4955.217411 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.23539 -48.77540 -48.73237 -41.73728 -40.78847 -39.47021 -37.85925 -36.68491 -34.74760 -32.19798 -31.44194 -31.14196 -30.00385 -28.72766 -27.31548 -25.16914 -24.38371 -23.35544 -22.88061 -20.40925 -20.09434 -19.76221 -19.44888 -19.18598 -18.86615 -18.25956 -17.88254 -17.51841 -17.15176 -16.84831 -16.63940 -16.14102 -15.77336 -15.69572 -15.57583 -15.52594 -15.38258 -15.15471 -14.90796 -14.89544 -14.86614 -14.44454 -14.09275 -13.95856 -13.71228 -13.61703 -13.56039 -13.23276 -12.95872 -12.83971 -12.46878 -12.36445 -12.35422 -12.13348 -12.09488 -11.98499 -11.76536 -10.85569 -10.75268 -9.75327 -9.48661 -8.90766 -8.36222 -6.41929 0.29422 0.43050 1.20316 1.30845 1.36713 1.44033 1.57685 1.69035 2.01148 2.29551 2.62363 2.66054 2.74864 2.85755 2.98293 3.25162 3.48386 3.78862 3.86670 3.91855 3.92376 4.06936 4.08400 4.11966 4.38642 4.39250 4.49767 4.65067 4.70965 4.78577 4.91353 4.96632 5.17923 5.34701 5.42669 5.52418 5.54289 5.73067 5.87620 6.20021 6.45226 6.59234 6.59963 7.16926 7.30756 8.80795 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010402 B = 0.002912 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.239689 B = 9613.976359 C =11728.941660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.601 5.601 3 C 0.224 3.776 4 C -0.540 4.540 5 H 0.029 0.971 6 C 0.010 3.990 7 N -0.945 5.945 8 Si 0.949 3.051 9 H -0.280 1.280 10 H -0.272 1.272 11 H -0.233 1.233 12 C 0.494 3.506 13 O -0.584 6.584 14 C 0.056 3.944 15 O -0.322 6.322 16 C 0.071 3.929 17 C -0.175 4.175 18 C -0.107 4.107 19 C -0.114 4.114 20 C -0.166 4.166 21 C 0.068 3.932 22 O -0.326 6.326 23 C 0.013 3.987 24 C 0.459 3.541 25 F -0.189 7.189 26 F -0.165 7.165 27 F -0.191 7.191 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.015 0.985 33 H 0.269 0.731 34 H 0.116 0.884 35 H 0.130 0.870 36 H 0.158 0.842 37 H 0.161 0.839 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.141 0.859 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.200 -27.640 10.134 31.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.333 5.333 3 C 0.101 3.899 4 C -0.579 4.579 5 H 0.047 0.953 6 C -0.188 4.188 7 N -0.585 5.585 8 Si 0.771 3.229 9 H -0.206 1.206 10 H -0.197 1.197 11 H -0.156 1.156 12 C 0.281 3.719 13 O -0.464 6.464 14 C -0.022 4.022 15 O -0.236 6.236 16 C 0.026 3.974 17 C -0.194 4.194 18 C -0.125 4.125 19 C -0.132 4.132 20 C -0.184 4.184 21 C 0.024 3.976 22 O -0.242 6.242 23 C -0.063 4.063 24 C 0.405 3.595 25 F -0.171 7.171 26 F -0.147 7.147 27 F -0.173 7.173 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.078 0.922 32 H 0.034 0.966 33 H 0.078 0.922 34 H 0.133 0.867 35 H 0.148 0.852 36 H 0.175 0.825 37 H 0.179 0.821 38 H 0.181 0.819 39 H 0.183 0.817 40 H 0.158 0.842 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.183 -27.233 10.033 30.440 hybrid contribution 1.124 1.040 -0.213 1.546 sum -8.060 -26.193 9.819 29.111 Atomic orbital electron populations 1.22138 0.76742 1.04628 1.03667 1.47862 1.08866 1.05187 1.71413 1.19394 0.92843 0.82206 0.95420 1.21573 1.37085 1.06814 0.92418 0.95297 1.25883 0.95189 0.99006 0.98733 1.70053 1.42567 1.24534 1.21330 0.85706 0.79498 0.77775 0.79910 1.20631 1.19730 1.15612 1.20856 0.87822 0.86326 0.76871 1.90697 1.16723 1.87851 1.51145 1.22605 0.91014 0.82468 1.06064 1.86242 1.35571 1.12412 1.89332 1.18858 0.92672 0.82618 1.03232 1.21465 0.91094 1.01121 1.05694 1.21358 1.01884 0.90697 0.98581 1.21343 0.91735 1.00819 0.99281 1.21433 0.98133 0.93616 1.05227 1.18571 0.80760 0.93259 1.05006 1.86168 1.15800 1.31966 1.90220 1.24061 0.83983 0.88622 1.09614 1.20405 0.90959 0.74757 0.73375 1.93214 1.95043 1.77087 1.51718 1.93223 1.76442 1.48793 1.96226 1.93223 1.95052 1.77587 1.51392 0.89346 0.90983 0.88813 0.92196 0.96642 0.92208 0.86684 0.85233 0.82494 0.82107 0.81879 0.81694 0.84175 0.84455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.79 10.24 127.77 1.31 3.10 16 2 N -0.60 -24.36 2.86 -851.11 -2.43 -26.79 16 3 C 0.22 11.06 4.23 85.63 0.36 11.43 16 4 C -0.54 -32.51 9.94 25.60 0.25 -32.26 16 5 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 6 C 0.01 0.60 5.47 84.65 0.46 1.06 16 7 N -0.94 -60.94 13.96 21.45 0.30 -60.64 16 8 Si 0.95 45.32 27.47 68.60 1.88 47.20 16 9 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.23 -9.83 6.54 99.48 0.65 -9.18 16 12 C 0.49 21.23 7.75 87.66 0.68 21.90 16 13 O -0.58 -32.84 16.08 16.00 0.26 -32.58 16 14 C 0.06 1.64 3.77 71.24 0.27 1.91 16 15 O -0.32 -11.51 9.45 -67.05 -0.63 -12.14 16 16 C 0.07 1.91 6.70 22.57 0.15 2.06 16 17 C -0.18 -3.08 9.04 22.35 0.20 -2.88 16 18 C -0.11 -1.28 10.04 22.27 0.22 -1.05 16 19 C -0.11 -1.22 10.04 22.27 0.22 -0.99 16 20 C -0.17 -2.36 9.04 22.35 0.20 -2.15 16 21 C 0.07 1.65 6.70 22.57 0.15 1.80 16 22 O -0.33 -9.12 9.81 -79.53 -0.78 -9.90 16 23 C 0.01 0.22 4.70 71.98 0.34 0.56 16 24 C 0.46 10.21 3.32 71.98 0.24 10.45 16 25 F -0.19 -5.23 17.26 44.97 0.78 -4.46 16 26 F -0.17 -3.03 17.32 44.97 0.78 -2.25 16 27 F -0.19 -5.49 17.26 44.97 0.78 -4.72 16 28 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.07 2.00 8.07 -2.38 -0.02 1.98 16 30 H 0.09 1.73 6.44 -2.39 -0.02 1.72 16 31 H 0.06 2.64 7.13 -2.39 -0.02 2.62 16 32 H 0.02 0.84 6.85 -2.38 -0.02 0.82 16 33 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 34 H 0.12 2.66 6.91 -2.39 -0.02 2.65 16 35 H 0.13 2.56 7.64 -2.39 -0.02 2.54 16 36 H 0.16 1.96 6.30 -2.91 -0.02 1.94 16 37 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 38 H 0.16 0.61 8.06 -2.91 -0.02 0.59 16 39 H 0.17 1.13 6.30 -2.91 -0.02 1.11 16 40 H 0.14 1.27 7.66 -2.39 -0.02 1.25 16 41 H 0.14 1.34 7.66 -2.38 -0.02 1.32 16 Total: -1.00 -93.96 364.78 7.02 -86.94 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 1.03 Total: 4.39 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 5.07 Total: 14.94 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -2.13 Total: -87.42 kcal Atomic # 8 Polarization: -53.47 SS G_CDS: -1.16 Total: -54.62 kcal Atomic # 9 Polarization: -13.75 SS G_CDS: 2.33 Total: -11.42 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.20 kcal Total: -93.96 7.02 -86.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067911651.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.468 kcal (2) G-P(sol) polarization free energy of solvation -93.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds