Wall clock time and date at job start Wed Apr 1 2020 04:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99788 * 2 1 4 4 C 1.52999 * 109.46957 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47113 * 179.97438 * 4 3 2 6 6 C 1.35821 * 126.05261 * 125.26124 * 5 4 3 7 7 C 1.35769 * 107.56171 * 180.14662 * 6 5 4 8 8 N 1.40704 * 126.08484 * 179.87351 * 7 6 5 9 9 C 1.34774 * 120.00075 * 179.71261 * 8 7 6 10 10 O 1.21584 * 119.99711 * 0.02562 * 9 8 7 11 11 C 1.47842 * 120.00001 * 179.97438 * 9 8 7 12 12 C 1.39683 * 120.10151 * 359.97438 * 11 9 8 13 13 C 1.38038 * 120.03533 * 180.02562 * 12 11 9 14 14 C 1.38176 * 120.24773 * 359.71659 * 13 12 11 15 15 C 1.39188 * 120.20098 * 0.55985 * 14 13 12 16 16 S 1.76194 * 120.01963 * 179.71480 * 15 14 13 17 17 C 1.76196 * 100.00182 * 265.25184 * 16 15 14 18 18 H 1.08000 * 120.00393 * 5.12593 * 17 16 15 19 19 C 1.38736 * 120.00006 * 185.12109 * 17 16 15 20 20 N 1.31616 * 119.99932 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99686 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46950 * 90.00202 * 21 19 17 23 23 H 1.48495 * 109.46650 * 209.99961 * 21 19 17 24 24 H 1.48498 * 109.47335 * 329.99842 * 21 19 17 25 25 C 1.38875 * 119.95888 * 359.44665 * 15 14 13 26 26 C 1.40267 * 107.83184 * 359.61196 * 7 6 5 27 27 N 1.30827 * 108.33518 * 0.23924 * 26 7 6 28 28 H 1.09000 * 109.47402 * 60.00281 * 1 2 3 29 29 H 1.09003 * 109.46834 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47099 * 299.99896 * 1 2 3 31 31 H 1.09001 * 109.46929 * 60.00048 * 3 2 1 32 32 H 1.09006 * 109.47065 * 299.99656 * 3 2 1 33 33 H 1.09008 * 109.46767 * 59.99821 * 4 3 2 34 34 H 1.08999 * 109.47246 * 300.00321 * 4 3 2 35 35 H 1.08002 * 126.21494 * 0.02562 * 6 5 4 36 36 H 0.97001 * 119.99634 * 359.71730 * 8 7 6 37 37 H 1.08002 * 119.98060 * 359.97438 * 12 11 9 38 38 H 1.07997 * 119.87209 * 180.02562 * 13 12 11 39 39 H 1.07998 * 119.90336 * 180.29515 * 14 13 12 40 40 H 0.97004 * 119.99833 * 179.97438 * 20 19 17 41 41 H 1.08005 * 120.12042 * 180.25459 * 25 15 14 42 42 H 1.08004 * 125.83263 * 180.20581 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0352 2.9960 0.8967 7 6 5.3295 4.2743 0.5463 8 7 6.2230 5.1318 1.2141 9 6 6.4281 6.3819 0.7542 10 8 5.8408 6.7687 -0.2376 11 6 7.3665 7.2832 1.4562 12 6 8.0412 6.8415 2.5968 13 6 8.9167 7.6843 3.2515 14 6 9.1343 8.9647 2.7798 15 6 8.4630 9.4172 1.6476 16 16 8.7385 11.0534 1.0546 17 6 7.4032 11.8925 1.8405 18 1 6.7703 11.3653 2.5390 19 6 7.1649 13.2306 1.5621 20 7 7.9365 13.8733 0.7113 21 14 5.7497 14.1203 2.3959 22 1 6.2251 14.7258 3.6657 23 1 5.2393 15.1881 1.4989 24 1 4.6597 13.1544 2.6857 25 6 7.5803 8.5765 0.9823 26 6 4.5888 4.5858 -0.6034 27 7 3.8740 3.5395 -0.9286 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8901 33 1 3.8574 0.6435 -0.8892 34 1 3.8567 0.6439 0.8908 35 1 5.4439 2.4543 1.7369 36 1 6.6913 4.8232 2.0056 37 1 7.8772 5.8402 2.9670 38 1 9.4372 7.3399 4.1328 39 1 9.8240 9.6178 3.2937 40 1 7.7696 14.8088 0.5163 41 1 7.0612 8.9236 0.1011 42 1 4.6054 5.5287 -1.1300 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079410901.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:21 Heat of formation + Delta-G solvation = 30.979931 kcal Electronic energy + Delta-G solvation = -25765.999387 eV Core-core repulsion = 21839.582680 eV Total energy + Delta-G solvation = -3926.416707 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.56694 -39.86806 -38.45731 -37.87022 -35.07504 -33.68263 -32.51830 -31.13505 -30.61085 -30.16308 -28.46430 -26.61548 -25.58095 -24.07045 -23.74461 -22.42599 -21.59657 -21.19332 -19.96360 -18.26119 -17.83015 -17.38604 -16.76679 -16.75304 -15.94883 -15.84906 -15.61433 -15.21729 -15.15816 -14.85887 -14.63400 -14.39112 -14.00380 -13.87558 -13.70500 -13.45167 -13.02242 -12.97331 -12.59614 -12.34716 -12.14848 -11.85357 -11.69180 -11.18261 -11.16211 -11.09258 -10.95686 -10.88450 -10.72418 -10.24180 -9.99138 -9.81449 -9.62425 -9.17839 -9.05874 -8.69238 -8.07139 -7.87852 -6.72924 -6.29656 -4.03870 1.02735 1.55778 1.63539 1.96467 2.53467 3.01730 3.13668 3.20341 3.24216 3.27949 3.31475 3.45211 4.05919 4.21016 4.23818 4.41963 4.48938 4.69632 4.72708 4.82985 4.84250 4.91277 5.01806 5.06993 5.12855 5.16283 5.17439 5.19523 5.39503 5.45924 5.48751 5.68639 5.82418 5.92167 6.04114 6.20185 6.47415 6.52163 6.58445 6.66534 6.76159 6.88731 7.13393 7.30684 7.51890 7.56583 8.16707 8.31541 9.16275 10.77022 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.015903 B = 0.001911 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.298704 B =14647.183109 C =15659.126714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.392 6.392 3 C 0.049 3.951 4 C 0.147 3.853 5 N -0.375 5.375 6 C 0.014 3.986 7 C 0.013 3.987 8 N -0.645 5.645 9 C 0.567 3.433 10 O -0.522 6.522 11 C -0.153 4.153 12 C -0.090 4.090 13 C -0.140 4.140 14 C -0.053 4.053 15 C -0.107 4.107 16 S -0.033 6.033 17 C -0.521 4.521 18 H 0.076 0.924 19 C 0.074 3.926 20 N -0.869 5.869 21 Si 0.921 3.079 22 H -0.276 1.276 23 H -0.281 1.281 24 H -0.271 1.271 25 C -0.016 4.016 26 C 0.057 3.943 27 N -0.285 5.285 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.177 0.823 36 H 0.409 0.591 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.132 0.868 40 H 0.270 0.730 41 H 0.141 0.859 42 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.779 -26.831 4.091 27.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.028 4.028 4 C 0.025 3.975 5 N -0.162 5.162 6 C -0.132 4.132 7 C -0.092 4.092 8 N -0.291 5.291 9 C 0.357 3.643 10 O -0.398 6.398 11 C -0.158 4.158 12 C -0.109 4.109 13 C -0.160 4.160 14 C -0.074 4.074 15 C -0.217 4.217 16 S 0.201 5.799 17 C -0.668 4.668 18 H 0.094 0.906 19 C -0.135 4.135 20 N -0.505 5.505 21 Si 0.747 3.253 22 H -0.202 1.202 23 H -0.206 1.206 24 H -0.196 1.196 25 C -0.037 4.037 26 C -0.131 4.131 27 N -0.107 5.107 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.195 0.805 36 H 0.245 0.755 37 H 0.135 0.865 38 H 0.142 0.858 39 H 0.150 0.850 40 H 0.080 0.920 41 H 0.159 0.841 42 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -7.112 -26.655 1.757 27.643 hybrid contribution -1.164 0.388 2.451 2.741 sum -8.276 -26.266 4.208 27.859 Atomic orbital electron populations 1.22782 0.79968 1.03056 1.00453 1.87767 1.20573 1.27070 1.95627 1.22700 0.92802 0.85199 1.02133 1.21282 0.92304 0.78844 1.05084 1.48112 1.34443 1.11860 1.21806 1.21842 0.98358 0.94594 0.98427 1.17754 1.01393 0.91144 0.98882 1.42766 1.43360 1.12505 1.30474 1.18426 0.81561 0.80483 0.83818 1.90658 1.48718 1.74710 1.25688 1.19704 1.01634 0.95697 0.98751 1.21129 0.96392 0.98897 0.94502 1.21056 0.99841 0.94492 1.00599 1.21989 0.96741 0.94931 0.93766 1.22876 0.98338 1.02940 0.97580 1.83627 1.40540 0.91170 1.64533 1.22840 1.16799 0.97655 1.29535 0.90582 1.25001 0.97027 0.96499 0.95015 1.69982 1.37415 1.10779 1.32280 0.86123 0.81142 0.79043 0.79040 1.20175 1.20633 1.19554 1.21966 0.93488 0.90329 0.97948 1.24638 0.94123 0.98804 0.95495 1.77386 1.23745 0.96306 1.13215 0.93650 0.89202 0.93819 0.92635 0.91468 0.88866 0.87802 0.80545 0.75477 0.86490 0.85757 0.84988 0.92031 0.84117 0.77436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.04 10.70 -35.23 -0.38 -3.42 16 3 C 0.05 0.37 6.12 37.16 0.23 0.60 16 4 C 0.15 1.02 6.88 -4.04 -0.03 0.99 16 5 N -0.38 -3.74 3.70 -61.02 -0.23 -3.97 16 6 C 0.01 0.13 11.52 -16.67 -0.19 -0.06 16 7 C 0.01 0.15 6.90 -83.90 -0.58 -0.42 16 8 N -0.65 -7.42 5.42 -10.89 -0.06 -7.48 16 9 C 0.57 8.74 7.74 -12.33 -0.10 8.65 16 10 O -0.52 -9.64 13.49 5.29 0.07 -9.57 16 11 C -0.15 -2.44 5.87 -105.00 -0.62 -3.05 16 12 C -0.09 -1.14 9.54 -39.12 -0.37 -1.52 16 13 C -0.14 -1.88 10.02 -39.68 -0.40 -2.28 16 14 C -0.05 -0.91 9.79 -39.25 -0.38 -1.30 16 15 C -0.11 -2.21 5.45 -38.99 -0.21 -2.43 16 16 S -0.03 -0.84 21.40 -107.50 -2.30 -3.15 16 17 C -0.52 -14.54 9.46 30.92 0.29 -14.25 16 18 H 0.08 2.10 7.79 -52.49 -0.41 1.69 16 19 C 0.07 2.05 5.49 -17.46 -0.10 1.96 16 20 N -0.87 -25.24 13.22 55.49 0.73 -24.51 16 21 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 C -0.02 -0.31 9.34 -38.92 -0.36 -0.67 16 26 C 0.06 0.80 10.84 -17.22 -0.19 0.62 16 27 N -0.29 -3.76 12.41 30.71 0.38 -3.38 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.10 0.46 8.07 -51.93 -0.42 0.04 16 35 H 0.18 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.41 3.24 6.85 -40.82 -0.28 2.96 16 37 H 0.12 0.97 6.40 -52.49 -0.34 0.63 16 38 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.13 2.16 8.06 -52.49 -0.42 1.73 16 40 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.14 2.98 7.65 -52.48 -0.40 2.58 16 42 H 0.21 3.22 5.91 -52.48 -0.31 2.91 16 LS Contribution 381.23 15.07 5.75 5.75 Total: -1.00 -34.27 381.23 -8.04 -42.31 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.10 Total: 2.98 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -1.89 Total: -11.88 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.83 Total: -39.34 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.31 Total: -12.98 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -0.84 SS G_CDS: -2.30 Total: -3.15 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.27 -8.04 -42.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079410901.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.290 kcal (2) G-P(sol) polarization free energy of solvation -34.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds