Wall clock time and date at job start Wed Apr 1 2020 04:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99788 * 2 1 4 4 C 1.52999 * 109.46957 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47113 * 179.97438 * 4 3 2 6 6 C 1.35821 * 126.05261 * 125.26124 * 5 4 3 7 7 C 1.35769 * 107.56171 * 180.14662 * 6 5 4 8 8 N 1.40704 * 126.08484 * 179.87351 * 7 6 5 9 9 C 1.34774 * 120.00075 * 179.71261 * 8 7 6 10 10 O 1.21584 * 119.99711 * 0.02562 * 9 8 7 11 11 C 1.47842 * 120.00001 * 179.97438 * 9 8 7 12 12 C 1.39683 * 120.10151 * 359.97438 * 11 9 8 13 13 C 1.38038 * 120.03533 * 180.02562 * 12 11 9 14 14 C 1.38176 * 120.24773 * 359.71659 * 13 12 11 15 15 C 1.39188 * 120.20098 * 0.55985 * 14 13 12 16 16 S 1.76194 * 120.01963 * 179.71480 * 15 14 13 17 17 C 1.76196 * 100.00182 * 265.25184 * 16 15 14 18 18 H 1.08000 * 120.00393 * 5.12593 * 17 16 15 19 19 C 1.38736 * 120.00006 * 185.12109 * 17 16 15 20 20 N 1.31616 * 119.99932 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99686 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46950 * 90.00202 * 21 19 17 23 23 H 1.48495 * 109.46650 * 209.99961 * 21 19 17 24 24 H 1.48498 * 109.47335 * 329.99842 * 21 19 17 25 25 C 1.38875 * 119.95888 * 359.44665 * 15 14 13 26 26 C 1.40267 * 107.83184 * 359.61196 * 7 6 5 27 27 N 1.30827 * 108.33518 * 0.23924 * 26 7 6 28 28 H 1.09000 * 109.47402 * 60.00281 * 1 2 3 29 29 H 1.09003 * 109.46834 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47099 * 299.99896 * 1 2 3 31 31 H 1.09001 * 109.46929 * 60.00048 * 3 2 1 32 32 H 1.09006 * 109.47065 * 299.99656 * 3 2 1 33 33 H 1.09008 * 109.46767 * 59.99821 * 4 3 2 34 34 H 1.08999 * 109.47246 * 300.00321 * 4 3 2 35 35 H 1.08002 * 126.21494 * 0.02562 * 6 5 4 36 36 H 0.97001 * 119.99634 * 359.71730 * 8 7 6 37 37 H 1.08002 * 119.98060 * 359.97438 * 12 11 9 38 38 H 1.07997 * 119.87209 * 180.02562 * 13 12 11 39 39 H 1.07998 * 119.90336 * 180.29515 * 14 13 12 40 40 H 0.97004 * 119.99833 * 179.97438 * 20 19 17 41 41 H 1.08005 * 120.12042 * 180.25459 * 25 15 14 42 42 H 1.08004 * 125.83263 * 180.20581 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0352 2.9960 0.8967 7 6 5.3295 4.2743 0.5463 8 7 6.2230 5.1318 1.2141 9 6 6.4281 6.3819 0.7542 10 8 5.8408 6.7687 -0.2376 11 6 7.3665 7.2832 1.4562 12 6 8.0412 6.8415 2.5968 13 6 8.9167 7.6843 3.2515 14 6 9.1343 8.9647 2.7798 15 6 8.4630 9.4172 1.6476 16 16 8.7385 11.0534 1.0546 17 6 7.4032 11.8925 1.8405 18 1 6.7703 11.3653 2.5390 19 6 7.1649 13.2306 1.5621 20 7 7.9365 13.8733 0.7113 21 14 5.7497 14.1203 2.3959 22 1 6.2251 14.7258 3.6657 23 1 5.2393 15.1881 1.4989 24 1 4.6597 13.1544 2.6857 25 6 7.5803 8.5765 0.9823 26 6 4.5888 4.5858 -0.6034 27 7 3.8740 3.5395 -0.9286 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8901 33 1 3.8574 0.6435 -0.8892 34 1 3.8567 0.6439 0.8908 35 1 5.4439 2.4543 1.7369 36 1 6.6913 4.8232 2.0056 37 1 7.8772 5.8402 2.9670 38 1 9.4372 7.3399 4.1328 39 1 9.8240 9.6178 3.2937 40 1 7.7696 14.8088 0.5163 41 1 7.0612 8.9236 0.1011 42 1 4.6054 5.5287 -1.1300 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079410901.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:20 Heat of formation + Delta-G solvation = 7.025601 kcal Electronic energy + Delta-G solvation = -25767.038125 eV Core-core repulsion = 21839.582680 eV Total energy + Delta-G solvation = -3927.455445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.45921 -41.01539 -39.19642 -38.93031 -36.09170 -34.64952 -34.47126 -32.35746 -31.89678 -30.95888 -29.27711 -27.73793 -27.14806 -25.16625 -24.51792 -23.71245 -22.55499 -22.09608 -21.06646 -19.89627 -18.98787 -18.49655 -17.53708 -17.36232 -17.10247 -16.93062 -16.70177 -16.55577 -16.32904 -16.13264 -15.73375 -15.41712 -15.25976 -14.92789 -14.73340 -14.57996 -14.31636 -13.87433 -13.83307 -13.25341 -13.14078 -13.04308 -12.96590 -12.71520 -12.61107 -12.38463 -12.35642 -11.87127 -11.78507 -11.73596 -11.24200 -11.07779 -10.78633 -10.73563 -10.46822 -9.97689 -9.69360 -8.79851 -8.77703 -8.38838 -6.18586 -0.21091 0.27711 0.75391 1.24952 1.29510 1.37231 1.44158 1.47710 1.68306 2.05298 2.10131 2.25670 2.75743 2.83976 2.94108 3.42660 3.60208 3.66017 3.88174 3.90085 3.97251 4.03702 4.07641 4.23115 4.34731 4.38319 4.44700 4.46454 4.50229 4.57009 4.66044 4.72785 4.77367 4.81522 4.94826 5.05777 5.24159 5.34604 5.39261 5.53382 5.68622 5.88760 5.93969 6.05772 6.16113 6.40359 6.61024 7.01567 7.12740 8.68060 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.015903 B = 0.001911 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.298704 B =14647.183109 C =15659.126714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.054 3.946 4 C 0.142 3.858 5 N -0.369 5.369 6 C 0.055 3.945 7 C -0.022 4.022 8 N -0.617 5.617 9 C 0.562 3.438 10 O -0.566 6.566 11 C -0.152 4.152 12 C -0.060 4.060 13 C -0.120 4.120 14 C -0.062 4.062 15 C -0.131 4.131 16 S -0.096 6.096 17 C -0.536 4.536 18 H 0.068 0.932 19 C 0.019 3.981 20 N -0.905 5.905 21 Si 0.991 3.009 22 H -0.261 1.261 23 H -0.273 1.273 24 H -0.269 1.269 25 C -0.043 4.043 26 C 0.031 3.969 27 N -0.316 5.316 28 H 0.044 0.956 29 H 0.106 0.894 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.097 0.903 34 H 0.143 0.857 35 H 0.234 0.766 36 H 0.430 0.570 37 H 0.180 0.820 38 H 0.178 0.822 39 H 0.134 0.866 40 H 0.274 0.726 41 H 0.103 0.897 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.994 -31.197 7.988 32.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.024 4.024 4 C 0.021 3.979 5 N -0.155 5.155 6 C -0.093 4.093 7 C -0.126 4.126 8 N -0.265 5.265 9 C 0.351 3.649 10 O -0.446 6.446 11 C -0.158 4.158 12 C -0.079 4.079 13 C -0.139 4.139 14 C -0.083 4.083 15 C -0.242 4.242 16 S 0.139 5.861 17 C -0.684 4.684 18 H 0.086 0.914 19 C -0.186 4.186 20 N -0.542 5.542 21 Si 0.813 3.187 22 H -0.186 1.186 23 H -0.198 1.198 24 H -0.194 1.194 25 C -0.065 4.065 26 C -0.156 4.156 27 N -0.138 5.138 28 H 0.062 0.938 29 H 0.124 0.876 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.115 0.885 34 H 0.161 0.839 35 H 0.250 0.750 36 H 0.271 0.729 37 H 0.197 0.803 38 H 0.195 0.805 39 H 0.152 0.848 40 H 0.083 0.917 41 H 0.121 0.879 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -7.324 -31.074 5.671 32.425 hybrid contribution -1.144 1.410 1.255 2.207 sum -8.468 -29.664 6.926 31.617 Atomic orbital electron populations 1.22964 0.78902 1.04290 1.00766 1.87743 1.21804 1.26921 1.95648 1.22593 0.93452 0.85150 1.01215 1.21605 0.91672 0.77383 1.07193 1.48471 1.33979 1.12091 1.20920 1.22628 0.95588 0.93059 0.97978 1.17883 1.02788 0.92636 0.99258 1.42358 1.42711 1.10847 1.30535 1.18399 0.81354 0.81670 0.83440 1.90668 1.50373 1.75834 1.27702 1.19776 1.02023 0.94093 0.99861 1.21764 0.93322 1.01126 0.91676 1.21568 0.98860 0.92177 1.01301 1.22096 0.96446 0.97145 0.92597 1.22496 1.01518 0.99917 1.00269 1.83495 1.40625 0.95971 1.66051 1.23076 1.17198 0.98415 1.29669 0.91393 1.26000 0.99733 0.97236 0.95620 1.70107 1.39186 1.11201 1.33684 0.85059 0.77529 0.77688 0.78426 1.18607 1.19810 1.19373 1.21625 0.94480 0.92642 0.97771 1.24364 0.95781 0.98437 0.96997 1.77342 1.24519 0.97111 1.14876 0.93756 0.87566 0.93138 0.92559 0.93505 0.88500 0.83922 0.74954 0.72950 0.80302 0.80478 0.84763 0.91730 0.87920 0.80360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.40 -5.40 10.70 -148.98 -1.59 -6.99 16 3 C 0.05 0.71 6.12 71.98 0.44 1.15 16 4 C 0.14 1.48 6.88 86.38 0.59 2.07 16 5 N -0.37 -6.28 3.70 -346.96 -1.28 -7.57 16 6 C 0.06 0.73 11.52 83.50 0.96 1.69 16 7 C -0.02 -0.47 6.90 37.64 0.26 -0.21 16 8 N -0.62 -12.31 5.42 -306.63 -1.66 -13.97 16 9 C 0.56 17.12 7.74 86.79 0.67 17.79 16 10 O -0.57 -22.42 13.49 -3.98 -0.05 -22.47 16 11 C -0.15 -4.71 5.87 -20.11 -0.12 -4.83 16 12 C -0.06 -1.23 9.54 22.57 0.22 -1.02 16 13 C -0.12 -2.65 10.02 22.21 0.22 -2.43 16 14 C -0.06 -2.07 9.79 22.48 0.22 -1.85 16 15 C -0.13 -5.68 5.45 22.65 0.12 -5.56 16 16 S -0.10 -5.25 21.40 -56.49 -1.21 -6.46 16 17 C -0.54 -31.57 9.46 67.94 0.64 -30.92 16 18 H 0.07 3.95 7.79 -2.91 -0.02 3.92 16 19 C 0.02 1.12 5.49 84.84 0.47 1.58 16 20 N -0.91 -54.87 13.22 21.64 0.29 -54.59 16 21 Si 0.99 44.89 29.55 68.60 2.03 46.92 16 22 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 25 C -0.04 -1.80 9.34 22.70 0.21 -1.59 16 26 C 0.03 0.89 10.84 85.34 0.92 1.81 16 27 N -0.32 -8.31 12.41 -56.76 -0.70 -9.02 16 28 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.14 0.45 8.07 -2.39 -0.02 0.43 16 35 H 0.23 0.34 8.06 -2.91 -0.02 0.31 16 36 H 0.43 4.27 6.85 -92.71 -0.64 3.63 16 37 H 0.18 1.47 6.40 -2.91 -0.02 1.45 16 38 H 0.18 2.21 8.06 -2.91 -0.02 2.18 16 39 H 0.13 4.33 8.06 -2.91 -0.02 4.30 16 40 H 0.27 15.37 8.31 -92.71 -0.77 14.59 16 41 H 0.10 4.92 7.65 -2.91 -0.02 4.90 16 42 H 0.18 6.18 5.91 -2.91 -0.02 6.16 16 Total: -1.00 -85.49 381.23 3.32 -82.17 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.43 Total: 12.78 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: 7.09 Total: -20.81 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -3.37 Total: -85.14 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -1.65 Total: -29.46 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 16 Polarization: -5.25 SS G_CDS: -1.21 Total: -6.46 kcal Total: -85.49 3.32 -82.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079410901.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.194 kcal (2) G-P(sol) polarization free energy of solvation -85.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds