Wall clock time and date at job start Wed Apr 1 2020 04:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34945 * 126.04009 * 2 1 4 4 C 1.35317 * 107.74926 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.04049 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47070 * 24.99783 * 5 4 3 7 7 O 1.42894 * 109.47275 * 145.00181 * 5 4 3 8 8 C 1.53004 * 109.46940 * 264.99858 * 5 4 3 9 9 N 1.46500 * 109.47329 * 179.97438 * 8 5 4 10 10 C 1.34775 * 120.00371 * 180.02562 * 9 8 5 11 11 O 1.21545 * 119.99769 * 0.02562 * 10 9 8 12 12 C 1.47861 * 120.00193 * 180.02562 * 10 9 8 13 13 C 1.39679 * 120.09893 * 359.72216 * 12 10 9 14 14 C 1.38045 * 120.03672 * 180.27160 * 13 12 10 15 15 C 1.38172 * 120.24430 * 0.02562 * 14 13 12 16 16 C 1.39186 * 120.20450 * 359.97438 * 15 14 13 17 17 S 1.76199 * 120.02422 * 179.97438 * 16 15 14 18 18 C 1.76207 * 99.99976 * 265.53211 * 17 16 15 19 19 H 1.08001 * 119.99538 * 5.11736 * 18 17 16 20 20 C 1.38730 * 119.99952 * 185.11854 * 18 17 16 21 21 N 1.31624 * 119.99613 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99781 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47298 * 89.99927 * 22 20 18 24 24 H 1.48507 * 109.46672 * 209.99964 * 22 20 18 25 25 H 1.48498 * 109.47069 * 329.99365 * 22 20 18 26 26 C 1.38876 * 119.95521 * 0.02562 * 16 15 14 27 27 C 1.39867 * 107.91965 * 0.26322 * 4 3 2 28 28 N 1.30839 * 108.20206 * 359.55675 * 27 4 3 29 29 H 1.08992 * 109.47577 * 89.99798 * 1 2 3 30 30 H 1.09000 * 109.46954 * 209.99976 * 1 2 3 31 31 H 1.08996 * 109.46724 * 329.99474 * 1 2 3 32 32 H 1.08002 * 126.12612 * 359.95993 * 3 2 1 33 33 H 0.96695 * 114.00446 * 59.99582 * 7 5 4 34 34 H 1.09003 * 109.46986 * 60.00105 * 8 5 4 35 35 H 1.08998 * 109.47178 * 299.99859 * 8 5 4 36 36 H 0.97006 * 119.99598 * 0.02562 * 9 8 5 37 37 H 1.08000 * 119.98302 * 0.25547 * 13 12 10 38 38 H 1.07994 * 119.87265 * 179.97438 * 14 13 12 39 39 H 1.07997 * 119.89729 * 179.97438 * 15 14 13 40 40 H 0.97003 * 119.99335 * 180.02562 * 21 20 18 41 41 H 1.08008 * 120.12011 * 180.02562 * 26 16 15 42 42 H 1.07998 * 125.90112 * 179.74018 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6665 0.0006 5 6 4.7680 1.5452 0.0013 6 1 4.5199 2.5136 0.4356 7 8 5.7981 0.9263 0.7744 8 6 5.2564 1.7406 -1.4354 9 7 6.4462 2.5954 -1.4349 10 6 7.0532 2.9063 -2.5973 11 8 6.6132 2.4780 -3.6462 12 6 8.2544 3.7685 -2.5966 13 6 8.7584 4.2667 -1.3929 14 6 9.8767 5.0761 -1.3943 15 6 10.5017 5.3976 -2.5839 16 6 10.0080 4.9068 -3.7892 17 16 10.8083 5.3203 -5.3035 18 6 9.8448 6.7138 -5.7882 19 1 9.0822 7.0990 -5.1276 20 6 10.0659 7.3159 -7.0184 21 7 10.9957 6.8465 -7.8231 22 14 9.0450 8.7934 -7.5319 23 1 9.7154 10.0392 -7.0807 24 1 8.9097 8.8117 -9.0106 25 1 7.6982 8.7038 -6.9127 26 6 8.8836 4.0918 -3.7976 27 6 3.5347 -0.7321 -0.0052 28 7 2.2892 -1.1328 0.0006 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8899 0.5139 32 1 1.9282 2.1193 -0.0006 33 1 6.0698 0.0587 0.4450 34 1 4.4706 2.2128 -2.0252 35 1 5.5045 0.7722 -1.8697 36 1 6.7971 2.9375 -0.5977 37 1 8.2729 4.0186 -0.4607 38 1 10.2639 5.4601 -0.4622 39 1 11.3759 6.0316 -2.5785 40 1 11.1505 7.2678 -8.6831 41 1 8.4985 3.7092 -4.7313 42 1 4.4054 -1.3711 -0.0102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080030742.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:57 Heat of formation + Delta-G solvation = 17.924323 kcal Electronic energy + Delta-G solvation = -25992.464350 eV Core-core repulsion = 22065.481509 eV Total energy + Delta-G solvation = -3926.982841 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.74040 -39.95170 -38.14951 -37.42645 -34.40920 -33.65328 -32.49427 -31.71081 -30.82969 -30.48573 -28.58834 -26.84825 -25.55567 -24.08377 -22.86866 -22.05669 -21.59730 -20.91432 -20.23082 -18.38944 -17.99145 -17.40974 -16.43375 -16.05926 -15.91995 -15.88183 -15.38676 -14.95934 -14.88330 -14.83390 -14.64066 -14.34137 -14.04750 -13.63270 -13.41987 -13.32456 -13.18176 -13.07930 -12.91292 -12.61913 -12.13138 -11.96367 -11.61798 -11.14165 -11.12309 -11.10431 -11.06688 -10.69836 -10.64339 -9.96317 -9.89927 -9.76689 -9.17433 -9.14941 -8.98591 -8.90124 -8.55466 -8.00511 -6.69470 -6.27285 -4.00971 1.19630 1.39997 1.69759 2.04114 2.25090 3.06103 3.13510 3.21112 3.24185 3.29121 3.49073 3.95278 4.09601 4.11351 4.28629 4.33452 4.47825 4.63172 4.64747 4.74483 4.80894 4.89984 4.93894 5.08938 5.14010 5.20830 5.27981 5.35004 5.49242 5.54824 5.75148 5.77766 5.90396 6.02084 6.11503 6.28307 6.34826 6.48509 6.61912 6.67098 6.95975 7.16431 7.22098 7.24227 7.53027 7.58849 8.31919 8.34061 9.18476 10.79421 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016534 B = 0.001966 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.090322 B =14239.991998 C =15216.420949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.374 5.374 3 C 0.072 3.928 4 C -0.272 4.272 5 C 0.180 3.820 6 H 0.109 0.891 7 O -0.552 6.552 8 C 0.094 3.906 9 N -0.728 5.728 10 C 0.563 3.437 11 O -0.536 6.536 12 C -0.154 4.154 13 C -0.088 4.088 14 C -0.141 4.141 15 C -0.055 4.055 16 C -0.108 4.108 17 S -0.035 6.035 18 C -0.519 4.519 19 H 0.076 0.924 20 C 0.073 3.927 21 N -0.870 5.870 22 Si 0.921 3.079 23 H -0.276 1.276 24 H -0.281 1.281 25 H -0.271 1.271 26 C -0.019 4.019 27 C 0.062 3.938 28 N -0.294 5.294 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.177 0.823 33 H 0.377 0.623 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.403 0.597 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.131 0.869 40 H 0.269 0.731 41 H 0.139 0.861 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.765 -11.016 20.340 28.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.156 5.156 3 C -0.075 4.075 4 C -0.284 4.284 5 C 0.119 3.881 6 H 0.127 0.873 7 O -0.357 6.357 8 C -0.030 4.030 9 N -0.382 5.382 10 C 0.352 3.648 11 O -0.414 6.414 12 C -0.159 4.159 13 C -0.108 4.108 14 C -0.161 4.161 15 C -0.076 4.076 16 C -0.218 4.218 17 S 0.199 5.801 18 C -0.667 4.667 19 H 0.094 0.906 20 C -0.136 4.136 21 N -0.505 5.505 22 Si 0.747 3.253 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.196 1.196 26 C -0.041 4.041 27 C -0.125 4.125 28 N -0.115 5.115 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.194 0.806 33 H 0.225 0.775 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.239 0.761 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.149 0.851 40 H 0.079 0.921 41 H 0.156 0.844 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -17.115 -12.264 19.162 28.469 hybrid contribution -1.121 1.831 0.324 2.171 sum -18.235 -10.433 19.487 28.655 Atomic orbital electron populations 1.21910 0.73901 1.04655 1.03690 1.48536 1.06857 1.03792 1.56405 1.22335 0.90587 0.93688 1.00852 1.20566 0.94933 0.94614 1.18334 1.20209 0.83241 0.94813 0.89815 0.87286 1.86587 1.55728 1.37528 1.55834 1.22033 0.88184 0.95731 0.97051 1.45781 1.30156 1.52725 1.09491 1.18417 0.83217 0.79919 0.83276 1.90775 1.65520 1.53731 1.31326 1.19849 0.97807 1.03315 0.94951 1.21165 0.96373 0.97032 0.96191 1.21062 0.96803 1.00061 0.98197 1.21958 0.98433 0.95752 0.91487 1.22848 0.98512 0.99110 1.01373 1.83603 1.42043 1.39573 1.14862 1.22840 1.23675 1.14328 1.05812 0.90622 1.25007 0.95613 0.97936 0.95092 1.69991 1.30613 1.40064 1.09857 0.86116 0.80122 0.81247 0.77812 1.20177 1.20664 1.19591 1.21947 0.92287 0.92616 0.97221 1.23661 0.95427 0.94170 0.99221 1.77404 1.01579 1.08183 1.24333 0.90458 0.89149 0.89289 0.80577 0.77462 0.90624 0.91055 0.76056 0.86352 0.85845 0.85102 0.92077 0.84368 0.79968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.36 11.47 59.85 0.69 1.05 16 2 N -0.37 -2.83 4.01 -68.17 -0.27 -3.11 16 3 C 0.07 0.49 11.40 -17.22 -0.20 0.29 16 4 C -0.27 -2.04 5.15 -105.05 -0.54 -2.58 16 5 C 0.18 1.26 3.51 -27.88 -0.10 1.16 16 6 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 7 O -0.55 -4.01 12.97 -35.23 -0.46 -4.47 16 8 C 0.09 0.89 5.32 -4.04 -0.02 0.87 16 9 N -0.73 -8.16 5.40 -61.24 -0.33 -8.50 16 10 C 0.56 9.05 7.77 -12.32 -0.10 8.95 16 11 O -0.54 -10.67 16.34 5.33 0.09 -10.58 16 12 C -0.15 -2.61 5.87 -105.00 -0.62 -3.22 16 13 C -0.09 -1.22 9.54 -39.11 -0.37 -1.59 16 14 C -0.14 -2.03 10.02 -39.68 -0.40 -2.43 16 15 C -0.06 -0.99 9.79 -39.25 -0.38 -1.38 16 16 C -0.11 -2.32 5.45 -38.99 -0.21 -2.53 16 17 S -0.04 -0.92 21.41 -107.50 -2.30 -3.22 16 18 C -0.52 -14.72 9.46 30.91 0.29 -14.43 16 19 H 0.08 2.12 7.79 -52.49 -0.41 1.72 16 20 C 0.07 2.04 5.49 -17.46 -0.10 1.95 16 21 N -0.87 -25.53 13.22 55.49 0.73 -24.80 16 22 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 C -0.02 -0.39 9.34 -38.92 -0.36 -0.75 16 27 C 0.06 0.50 11.40 -17.36 -0.20 0.31 16 28 N -0.29 -2.89 12.58 30.62 0.39 -2.51 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 32 H 0.18 0.62 8.06 -52.49 -0.42 0.20 16 33 H 0.38 1.76 8.25 45.56 0.38 2.14 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.40 3.66 6.38 -40.82 -0.26 3.40 16 37 H 0.12 1.16 6.40 -52.49 -0.34 0.83 16 38 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 39 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.14 3.08 7.65 -52.48 -0.40 2.68 16 42 H 0.18 0.98 7.65 -52.49 -0.40 0.58 16 LS Contribution 383.24 15.07 5.78 5.78 Total: -1.00 -37.04 383.24 -8.39 -45.43 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -4.37 Total: 3.79 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -2.61 Total: -14.33 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.51 Total: -38.91 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.37 Total: -15.05 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -2.30 Total: -3.22 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.04 -8.39 -45.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080030742.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.354 kcal (2) G-P(sol) polarization free energy of solvation -37.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds