Wall clock time and date at job start Wed Apr 1 2020 04:06:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.34945 * 126.04009 * 2 1
4 4 C 1.35317 * 107.74926 * 179.97438 * 3 2 1
5 5 C 1.50699 * 126.04049 * 180.02562 * 4 3 2
6 6 H 1.08998 * 109.47070 * 24.99783 * 5 4 3
7 7 O 1.42894 * 109.47275 * 145.00181 * 5 4 3
8 8 C 1.53004 * 109.46940 * 264.99858 * 5 4 3
9 9 N 1.46500 * 109.47329 * 179.97438 * 8 5 4
10 10 C 1.34775 * 120.00371 * 180.02562 * 9 8 5
11 11 O 1.21545 * 119.99769 * 0.02562 * 10 9 8
12 12 C 1.47861 * 120.00193 * 180.02562 * 10 9 8
13 13 C 1.39679 * 120.09893 * 359.72216 * 12 10 9
14 14 C 1.38045 * 120.03672 * 180.27160 * 13 12 10
15 15 C 1.38172 * 120.24430 * 0.02562 * 14 13 12
16 16 C 1.39186 * 120.20450 * 359.97438 * 15 14 13
17 17 S 1.76199 * 120.02422 * 179.97438 * 16 15 14
18 18 C 1.76207 * 99.99976 * 265.53211 * 17 16 15
19 19 H 1.08001 * 119.99538 * 5.11736 * 18 17 16
20 20 C 1.38730 * 119.99952 * 185.11854 * 18 17 16
21 21 N 1.31624 * 119.99613 * 359.97438 * 20 18 17
22 22 Si 1.86795 * 119.99781 * 180.02562 * 20 18 17
23 23 H 1.48492 * 109.47298 * 89.99927 * 22 20 18
24 24 H 1.48507 * 109.46672 * 209.99964 * 22 20 18
25 25 H 1.48498 * 109.47069 * 329.99365 * 22 20 18
26 26 C 1.38876 * 119.95521 * 0.02562 * 16 15 14
27 27 C 1.39867 * 107.91965 * 0.26322 * 4 3 2
28 28 N 1.30839 * 108.20206 * 359.55675 * 27 4 3
29 29 H 1.08992 * 109.47577 * 89.99798 * 1 2 3
30 30 H 1.09000 * 109.46954 * 209.99976 * 1 2 3
31 31 H 1.08996 * 109.46724 * 329.99474 * 1 2 3
32 32 H 1.08002 * 126.12612 * 359.95993 * 3 2 1
33 33 H 0.96695 * 114.00446 * 59.99582 * 7 5 4
34 34 H 1.09003 * 109.46986 * 60.00105 * 8 5 4
35 35 H 1.08998 * 109.47178 * 299.99859 * 8 5 4
36 36 H 0.97006 * 119.99598 * 0.02562 * 9 8 5
37 37 H 1.08000 * 119.98302 * 0.25547 * 13 12 10
38 38 H 1.07994 * 119.87265 * 179.97438 * 14 13 12
39 39 H 1.07997 * 119.89729 * 179.97438 * 15 14 13
40 40 H 0.97003 * 119.99335 * 180.02562 * 21 20 18
41 41 H 1.08008 * 120.12011 * 180.02562 * 26 16 15
42 42 H 1.07998 * 125.90112 * 179.74018 * 27 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2590 1.0912 0.0000
4 6 3.5438 0.6665 0.0006
5 6 4.7680 1.5452 0.0013
6 1 4.5199 2.5136 0.4356
7 8 5.7981 0.9263 0.7744
8 6 5.2564 1.7406 -1.4354
9 7 6.4462 2.5954 -1.4349
10 6 7.0532 2.9063 -2.5973
11 8 6.6132 2.4780 -3.6462
12 6 8.2544 3.7685 -2.5966
13 6 8.7584 4.2667 -1.3929
14 6 9.8767 5.0761 -1.3943
15 6 10.5017 5.3976 -2.5839
16 6 10.0080 4.9068 -3.7892
17 16 10.8083 5.3203 -5.3035
18 6 9.8448 6.7138 -5.7882
19 1 9.0822 7.0990 -5.1276
20 6 10.0659 7.3159 -7.0184
21 7 10.9957 6.8465 -7.8231
22 14 9.0450 8.7934 -7.5319
23 1 9.7154 10.0392 -7.0807
24 1 8.9097 8.8117 -9.0106
25 1 7.6982 8.7038 -6.9127
26 6 8.8836 4.0918 -3.7976
27 6 3.5347 -0.7321 -0.0052
28 7 2.2892 -1.1328 0.0006
29 1 -0.3634 0.0000 -1.0276
30 1 -0.3633 -0.8900 0.5138
31 1 -0.3632 0.8899 0.5139
32 1 1.9282 2.1193 -0.0006
33 1 6.0698 0.0587 0.4450
34 1 4.4706 2.2128 -2.0252
35 1 5.5045 0.7722 -1.8697
36 1 6.7971 2.9375 -0.5977
37 1 8.2729 4.0186 -0.4607
38 1 10.2639 5.4601 -0.4622
39 1 11.3759 6.0316 -2.5785
40 1 11.1505 7.2678 -8.6831
41 1 8.4985 3.7092 -4.7313
42 1 4.4054 -1.3711 -0.0102
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000080030742.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:06:56
Heat of formation + Delta-G solvation = -10.294624 kcal
Electronic energy + Delta-G solvation = -25993.688015 eV
Core-core repulsion = 22065.481509 eV
Total energy + Delta-G solvation = -3928.206506 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-42.25877 -41.18605 -39.26478 -38.31164 -35.43622 -34.64818 -34.09270 -32.62026
-31.94525 -31.72832 -29.25505 -27.74016 -27.39846 -25.07640 -23.94442 -23.29469
-22.10659 -21.76071 -21.17118 -19.99528 -19.07288 -18.50478 -17.29688 -17.20371
-16.92942 -16.74379 -16.65190 -16.32562 -16.15192 -15.68731 -15.62679 -15.29791
-15.11565 -14.78675 -14.61424 -14.54442 -13.96763 -13.76241 -13.59810 -13.45649
-13.27276 -13.18969 -13.04094 -12.96118 -12.64364 -12.48581 -12.37629 -11.74293
-11.66119 -11.34187 -11.22616 -11.04076 -10.73109 -10.43384 -10.26271 -9.86999
-9.67431 -9.43221 -8.79683 -8.38664 -6.18631 -0.15357 0.28101 0.90376
1.29779 1.37725 1.46417 1.62483 1.66307 1.69296 1.82799 2.15203
2.25876 2.83147 2.94103 3.42746 3.47902 3.58968 3.74444 3.88839
3.95977 3.98055 4.08458 4.18406 4.27644 4.32548 4.38668 4.42179
4.51659 4.62031 4.67734 4.69129 4.78611 4.87797 4.95403 5.19949
5.25304 5.33109 5.36584 5.39477 5.53120 5.60790 5.89282 6.07791
6.16274 6.49551 6.66390 6.79672 7.01439 7.17173 8.68329
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.016534 B = 0.001966 C = 0.001840
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1693.090322 B =14239.991998 C =15216.420949
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.091 3.909
2 N -0.381 5.381
3 C 0.075 3.925
4 C -0.287 4.287
5 C 0.199 3.801
6 H 0.126 0.874
7 O -0.559 6.559
8 C 0.095 3.905
9 N -0.700 5.700
10 C 0.561 3.439
11 O -0.585 6.585
12 C -0.156 4.156
13 C -0.061 4.061
14 C -0.121 4.121
15 C -0.063 4.063
16 C -0.130 4.130
17 S -0.097 6.097
18 C -0.536 4.536
19 H 0.068 0.932
20 C 0.018 3.982
21 N -0.906 5.906
22 Si 0.993 3.007
23 H -0.261 1.261
24 H -0.273 1.273
25 H -0.269 1.269
26 C -0.046 4.046
27 C 0.052 3.948
28 N -0.339 5.339
29 H 0.082 0.918
30 H 0.089 0.911
31 H 0.117 0.883
32 H 0.209 0.791
33 H 0.388 0.612
34 H 0.068 0.932
35 H 0.062 0.938
36 H 0.418 0.582
37 H 0.174 0.826
38 H 0.176 0.824
39 H 0.135 0.865
40 H 0.274 0.726
41 H 0.101 0.899
42 H 0.199 0.801
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.402 -9.756 24.184 31.917
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.049 4.049
2 N -0.163 5.163
3 C -0.073 4.073
4 C -0.300 4.300
5 C 0.139 3.861
6 H 0.144 0.856
7 O -0.365 6.365
8 C -0.030 4.030
9 N -0.353 5.353
10 C 0.349 3.651
11 O -0.467 6.467
12 C -0.161 4.161
13 C -0.079 4.079
14 C -0.140 4.140
15 C -0.084 4.084
16 C -0.242 4.242
17 S 0.138 5.862
18 C -0.683 4.683
19 H 0.086 0.914
20 C -0.188 4.188
21 N -0.542 5.542
22 Si 0.815 3.185
23 H -0.186 1.186
24 H -0.198 1.198
25 H -0.193 1.193
26 C -0.068 4.068
27 C -0.134 4.134
28 N -0.160 5.160
29 H 0.101 0.899
30 H 0.108 0.892
31 H 0.135 0.865
32 H 0.226 0.774
33 H 0.238 0.762
34 H 0.086 0.914
35 H 0.080 0.920
36 H 0.258 0.742
37 H 0.192 0.808
38 H 0.193 0.807
39 H 0.152 0.848
40 H 0.083 0.917
41 H 0.119 0.881
42 H 0.216 0.784
Dipole moment (debyes) X Y Z Total
from point charges -18.755 -11.029 23.068 31.710
hybrid contribution -0.684 1.320 -0.692 1.640
sum -19.440 -9.709 22.376 31.191
Atomic orbital electron populations
1.22201 0.72132 1.06060 1.04497 1.48869 1.08035 1.03500 1.55859
1.22921 0.90383 0.94846 0.99172 1.20679 0.95544 0.94345 1.19406
1.20038 0.82842 0.95474 0.87796 0.85600 1.86561 1.55694 1.38391
1.55903 1.22176 0.87023 0.94680 0.99072 1.45567 1.29758 1.51511
1.08462 1.18378 0.83117 0.79685 0.83872 1.90760 1.66810 1.55683
1.33403 1.19960 0.97963 1.03431 0.94776 1.21732 0.95263 0.94258
0.96687 1.21559 0.95715 0.98359 0.98383 1.22071 0.98935 0.95851
0.91529 1.22499 0.99875 1.01858 0.99937 1.83486 1.43589 1.39703
1.19418 1.23069 1.23666 1.15264 1.06281 0.91426 1.26032 0.96752
1.01048 0.94920 1.70116 1.32137 1.41653 1.10315 0.85029 0.78280
0.77543 0.77655 1.18620 1.19759 1.19306 1.21624 0.93230 0.94238
0.97700 1.24056 0.95618 0.95082 0.98608 1.77338 1.02581 1.10000
1.26122 0.89931 0.89242 0.86459 0.77407 0.76235 0.91400 0.91968
0.74245 0.80836 0.80683 0.84751 0.91725 0.88092 0.78418
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.51 11.47 127.77 1.47 1.97 16
2 N -0.38 -5.19 4.01 -369.58 -1.48 -6.67 16
3 C 0.07 0.81 11.40 83.54 0.95 1.76 16
4 C -0.29 -3.69 5.15 -20.14 -0.10 -3.79 16
5 C 0.20 2.16 3.51 29.85 0.10 2.26 16
6 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16
7 O -0.56 -6.18 12.97 -148.98 -1.93 -8.11 16
8 C 0.09 1.59 5.32 86.38 0.46 2.05 16
9 N -0.70 -13.63 5.40 -465.96 -2.52 -16.15 16
10 C 0.56 17.49 7.77 86.79 0.67 18.16 16
11 O -0.59 -23.98 16.34 -3.86 -0.06 -24.04 16
12 C -0.16 -5.08 5.87 -20.11 -0.12 -5.20 16
13 C -0.06 -1.39 9.54 22.57 0.22 -1.17 16
14 C -0.12 -2.91 10.02 22.21 0.22 -2.68 16
15 C -0.06 -2.19 9.79 22.48 0.22 -1.97 16
16 C -0.13 -5.82 5.45 22.65 0.12 -5.69 16
17 S -0.10 -5.34 21.41 -56.49 -1.21 -6.55 16
18 C -0.54 -31.72 9.46 67.94 0.64 -31.08 16
19 H 0.07 3.96 7.79 -2.91 -0.02 3.93 16
20 C 0.02 1.02 5.49 84.84 0.47 1.49 16
21 N -0.91 -55.06 13.22 21.64 0.29 -54.77 16
22 Si 0.99 44.89 29.55 68.60 2.03 46.91 16
23 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16
24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16
25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16
26 C -0.05 -1.97 9.34 22.70 0.21 -1.76 16
27 C 0.05 0.79 11.40 85.24 0.97 1.77 16
28 N -0.34 -6.46 12.58 -57.02 -0.72 -7.17 16
29 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16
30 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16
31 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16
32 H 0.21 0.68 8.06 -2.91 -0.02 0.66 16
33 H 0.39 2.54 8.25 -74.06 -0.61 1.93 16
34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16
35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16
36 H 0.42 5.48 6.38 -92.70 -0.59 4.89 16
37 H 0.17 2.08 6.40 -2.91 -0.02 2.06 16
38 H 0.18 2.56 8.06 -2.91 -0.02 2.53 16
39 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16
40 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16
41 H 0.10 4.97 7.65 -2.91 -0.02 4.95 16
42 H 0.20 1.95 7.65 -2.91 -0.02 1.93 16
Total: -1.00 -87.76 383.24 0.78 -86.98
By element:
Atomic # 1 Polarization: 13.58 SS G_CDS: -0.12 Total: 13.45 kcal
Atomic # 6 Polarization: -30.39 SS G_CDS: 6.51 Total: -23.88 kcal
Atomic # 7 Polarization: -80.34 SS G_CDS: -4.43 Total: -84.77 kcal
Atomic # 8 Polarization: -30.16 SS G_CDS: -2.00 Total: -32.15 kcal
Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal
Atomic # 16 Polarization: -5.34 SS G_CDS: -1.21 Total: -6.55 kcal
Total: -87.76 0.78 -86.98 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000080030742.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.684 kcal
(2) G-P(sol) polarization free energy of solvation -87.756 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.073 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.978 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.295 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds