Wall clock time and date at job start Wed Apr 1 2020 04:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34945 * 126.04009 * 2 1 4 4 C 1.35317 * 107.74926 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.04049 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47070 * 24.99783 * 5 4 3 7 7 O 1.42894 * 109.47275 * 145.00181 * 5 4 3 8 8 C 1.53004 * 109.46940 * 264.99858 * 5 4 3 9 9 N 1.46500 * 109.47329 * 179.97438 * 8 5 4 10 10 C 1.34775 * 120.00371 * 180.02562 * 9 8 5 11 11 O 1.21545 * 119.99769 * 0.02562 * 10 9 8 12 12 C 1.47861 * 120.00193 * 180.02562 * 10 9 8 13 13 C 1.39679 * 120.09893 * 359.72216 * 12 10 9 14 14 C 1.38045 * 120.03672 * 180.27160 * 13 12 10 15 15 C 1.38172 * 120.24430 * 0.02562 * 14 13 12 16 16 C 1.39186 * 120.20450 * 359.97438 * 15 14 13 17 17 S 1.76199 * 120.02422 * 179.97438 * 16 15 14 18 18 C 1.76207 * 99.99976 * 265.53211 * 17 16 15 19 19 H 1.08001 * 119.99538 * 5.11736 * 18 17 16 20 20 C 1.38730 * 119.99952 * 185.11854 * 18 17 16 21 21 N 1.31624 * 119.99613 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99781 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47298 * 89.99927 * 22 20 18 24 24 H 1.48507 * 109.46672 * 209.99964 * 22 20 18 25 25 H 1.48498 * 109.47069 * 329.99365 * 22 20 18 26 26 C 1.38876 * 119.95521 * 0.02562 * 16 15 14 27 27 C 1.39867 * 107.91965 * 0.26322 * 4 3 2 28 28 N 1.30839 * 108.20206 * 359.55675 * 27 4 3 29 29 H 1.08992 * 109.47577 * 89.99798 * 1 2 3 30 30 H 1.09000 * 109.46954 * 209.99976 * 1 2 3 31 31 H 1.08996 * 109.46724 * 329.99474 * 1 2 3 32 32 H 1.08002 * 126.12612 * 359.95993 * 3 2 1 33 33 H 0.96695 * 114.00446 * 59.99582 * 7 5 4 34 34 H 1.09003 * 109.46986 * 60.00105 * 8 5 4 35 35 H 1.08998 * 109.47178 * 299.99859 * 8 5 4 36 36 H 0.97006 * 119.99598 * 0.02562 * 9 8 5 37 37 H 1.08000 * 119.98302 * 0.25547 * 13 12 10 38 38 H 1.07994 * 119.87265 * 179.97438 * 14 13 12 39 39 H 1.07997 * 119.89729 * 179.97438 * 15 14 13 40 40 H 0.97003 * 119.99335 * 180.02562 * 21 20 18 41 41 H 1.08008 * 120.12011 * 180.02562 * 26 16 15 42 42 H 1.07998 * 125.90112 * 179.74018 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6665 0.0006 5 6 4.7680 1.5452 0.0013 6 1 4.5199 2.5136 0.4356 7 8 5.7981 0.9263 0.7744 8 6 5.2564 1.7406 -1.4354 9 7 6.4462 2.5954 -1.4349 10 6 7.0532 2.9063 -2.5973 11 8 6.6132 2.4780 -3.6462 12 6 8.2544 3.7685 -2.5966 13 6 8.7584 4.2667 -1.3929 14 6 9.8767 5.0761 -1.3943 15 6 10.5017 5.3976 -2.5839 16 6 10.0080 4.9068 -3.7892 17 16 10.8083 5.3203 -5.3035 18 6 9.8448 6.7138 -5.7882 19 1 9.0822 7.0990 -5.1276 20 6 10.0659 7.3159 -7.0184 21 7 10.9957 6.8465 -7.8231 22 14 9.0450 8.7934 -7.5319 23 1 9.7154 10.0392 -7.0807 24 1 8.9097 8.8117 -9.0106 25 1 7.6982 8.7038 -6.9127 26 6 8.8836 4.0918 -3.7976 27 6 3.5347 -0.7321 -0.0052 28 7 2.2892 -1.1328 0.0006 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8899 0.5139 32 1 1.9282 2.1193 -0.0006 33 1 6.0698 0.0587 0.4450 34 1 4.4706 2.2128 -2.0252 35 1 5.5045 0.7722 -1.8697 36 1 6.7971 2.9375 -0.5977 37 1 8.2729 4.0186 -0.4607 38 1 10.2639 5.4601 -0.4622 39 1 11.3759 6.0316 -2.5785 40 1 11.1505 7.2678 -8.6831 41 1 8.4985 3.7092 -4.7313 42 1 4.4054 -1.3711 -0.0102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080030742.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:56 Heat of formation + Delta-G solvation = -10.294624 kcal Electronic energy + Delta-G solvation = -25993.688015 eV Core-core repulsion = 22065.481509 eV Total energy + Delta-G solvation = -3928.206506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.25877 -41.18605 -39.26478 -38.31164 -35.43622 -34.64818 -34.09270 -32.62026 -31.94525 -31.72832 -29.25505 -27.74016 -27.39846 -25.07640 -23.94442 -23.29469 -22.10659 -21.76071 -21.17118 -19.99528 -19.07288 -18.50478 -17.29688 -17.20371 -16.92942 -16.74379 -16.65190 -16.32562 -16.15192 -15.68731 -15.62679 -15.29791 -15.11565 -14.78675 -14.61424 -14.54442 -13.96763 -13.76241 -13.59810 -13.45649 -13.27276 -13.18969 -13.04094 -12.96118 -12.64364 -12.48581 -12.37629 -11.74293 -11.66119 -11.34187 -11.22616 -11.04076 -10.73109 -10.43384 -10.26271 -9.86999 -9.67431 -9.43221 -8.79683 -8.38664 -6.18631 -0.15357 0.28101 0.90376 1.29779 1.37725 1.46417 1.62483 1.66307 1.69296 1.82799 2.15203 2.25876 2.83147 2.94103 3.42746 3.47902 3.58968 3.74444 3.88839 3.95977 3.98055 4.08458 4.18406 4.27644 4.32548 4.38668 4.42179 4.51659 4.62031 4.67734 4.69129 4.78611 4.87797 4.95403 5.19949 5.25304 5.33109 5.36584 5.39477 5.53120 5.60790 5.89282 6.07791 6.16274 6.49551 6.66390 6.79672 7.01439 7.17173 8.68329 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016534 B = 0.001966 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.090322 B =14239.991998 C =15216.420949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.381 5.381 3 C 0.075 3.925 4 C -0.287 4.287 5 C 0.199 3.801 6 H 0.126 0.874 7 O -0.559 6.559 8 C 0.095 3.905 9 N -0.700 5.700 10 C 0.561 3.439 11 O -0.585 6.585 12 C -0.156 4.156 13 C -0.061 4.061 14 C -0.121 4.121 15 C -0.063 4.063 16 C -0.130 4.130 17 S -0.097 6.097 18 C -0.536 4.536 19 H 0.068 0.932 20 C 0.018 3.982 21 N -0.906 5.906 22 Si 0.993 3.007 23 H -0.261 1.261 24 H -0.273 1.273 25 H -0.269 1.269 26 C -0.046 4.046 27 C 0.052 3.948 28 N -0.339 5.339 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.209 0.791 33 H 0.388 0.612 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.418 0.582 37 H 0.174 0.826 38 H 0.176 0.824 39 H 0.135 0.865 40 H 0.274 0.726 41 H 0.101 0.899 42 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.402 -9.756 24.184 31.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.163 5.163 3 C -0.073 4.073 4 C -0.300 4.300 5 C 0.139 3.861 6 H 0.144 0.856 7 O -0.365 6.365 8 C -0.030 4.030 9 N -0.353 5.353 10 C 0.349 3.651 11 O -0.467 6.467 12 C -0.161 4.161 13 C -0.079 4.079 14 C -0.140 4.140 15 C -0.084 4.084 16 C -0.242 4.242 17 S 0.138 5.862 18 C -0.683 4.683 19 H 0.086 0.914 20 C -0.188 4.188 21 N -0.542 5.542 22 Si 0.815 3.185 23 H -0.186 1.186 24 H -0.198 1.198 25 H -0.193 1.193 26 C -0.068 4.068 27 C -0.134 4.134 28 N -0.160 5.160 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.135 0.865 32 H 0.226 0.774 33 H 0.238 0.762 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.258 0.742 37 H 0.192 0.808 38 H 0.193 0.807 39 H 0.152 0.848 40 H 0.083 0.917 41 H 0.119 0.881 42 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -18.755 -11.029 23.068 31.710 hybrid contribution -0.684 1.320 -0.692 1.640 sum -19.440 -9.709 22.376 31.191 Atomic orbital electron populations 1.22201 0.72132 1.06060 1.04497 1.48869 1.08035 1.03500 1.55859 1.22921 0.90383 0.94846 0.99172 1.20679 0.95544 0.94345 1.19406 1.20038 0.82842 0.95474 0.87796 0.85600 1.86561 1.55694 1.38391 1.55903 1.22176 0.87023 0.94680 0.99072 1.45567 1.29758 1.51511 1.08462 1.18378 0.83117 0.79685 0.83872 1.90760 1.66810 1.55683 1.33403 1.19960 0.97963 1.03431 0.94776 1.21732 0.95263 0.94258 0.96687 1.21559 0.95715 0.98359 0.98383 1.22071 0.98935 0.95851 0.91529 1.22499 0.99875 1.01858 0.99937 1.83486 1.43589 1.39703 1.19418 1.23069 1.23666 1.15264 1.06281 0.91426 1.26032 0.96752 1.01048 0.94920 1.70116 1.32137 1.41653 1.10315 0.85029 0.78280 0.77543 0.77655 1.18620 1.19759 1.19306 1.21624 0.93230 0.94238 0.97700 1.24056 0.95618 0.95082 0.98608 1.77338 1.02581 1.10000 1.26122 0.89931 0.89242 0.86459 0.77407 0.76235 0.91400 0.91968 0.74245 0.80836 0.80683 0.84751 0.91725 0.88092 0.78418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.51 11.47 127.77 1.47 1.97 16 2 N -0.38 -5.19 4.01 -369.58 -1.48 -6.67 16 3 C 0.07 0.81 11.40 83.54 0.95 1.76 16 4 C -0.29 -3.69 5.15 -20.14 -0.10 -3.79 16 5 C 0.20 2.16 3.51 29.85 0.10 2.26 16 6 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 7 O -0.56 -6.18 12.97 -148.98 -1.93 -8.11 16 8 C 0.09 1.59 5.32 86.38 0.46 2.05 16 9 N -0.70 -13.63 5.40 -465.96 -2.52 -16.15 16 10 C 0.56 17.49 7.77 86.79 0.67 18.16 16 11 O -0.59 -23.98 16.34 -3.86 -0.06 -24.04 16 12 C -0.16 -5.08 5.87 -20.11 -0.12 -5.20 16 13 C -0.06 -1.39 9.54 22.57 0.22 -1.17 16 14 C -0.12 -2.91 10.02 22.21 0.22 -2.68 16 15 C -0.06 -2.19 9.79 22.48 0.22 -1.97 16 16 C -0.13 -5.82 5.45 22.65 0.12 -5.69 16 17 S -0.10 -5.34 21.41 -56.49 -1.21 -6.55 16 18 C -0.54 -31.72 9.46 67.94 0.64 -31.08 16 19 H 0.07 3.96 7.79 -2.91 -0.02 3.93 16 20 C 0.02 1.02 5.49 84.84 0.47 1.49 16 21 N -0.91 -55.06 13.22 21.64 0.29 -54.77 16 22 Si 0.99 44.89 29.55 68.60 2.03 46.91 16 23 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 C -0.05 -1.97 9.34 22.70 0.21 -1.76 16 27 C 0.05 0.79 11.40 85.24 0.97 1.77 16 28 N -0.34 -6.46 12.58 -57.02 -0.72 -7.17 16 29 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 32 H 0.21 0.68 8.06 -2.91 -0.02 0.66 16 33 H 0.39 2.54 8.25 -74.06 -0.61 1.93 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.42 5.48 6.38 -92.70 -0.59 4.89 16 37 H 0.17 2.08 6.40 -2.91 -0.02 2.06 16 38 H 0.18 2.56 8.06 -2.91 -0.02 2.53 16 39 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 40 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 41 H 0.10 4.97 7.65 -2.91 -0.02 4.95 16 42 H 0.20 1.95 7.65 -2.91 -0.02 1.93 16 Total: -1.00 -87.76 383.24 0.78 -86.98 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -0.12 Total: 13.45 kcal Atomic # 6 Polarization: -30.39 SS G_CDS: 6.51 Total: -23.88 kcal Atomic # 7 Polarization: -80.34 SS G_CDS: -4.43 Total: -84.77 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -2.00 Total: -32.15 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: -5.34 SS G_CDS: -1.21 Total: -6.55 kcal Total: -87.76 0.78 -86.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080030742.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.684 kcal (2) G-P(sol) polarization free energy of solvation -87.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds