Wall clock time and date at job start Wed Apr 1 2020 04:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34230 * 117.00706 * 2 1 4 4 O 1.20828 * 119.99577 * 359.97438 * 3 2 1 5 5 C 1.50691 * 120.00275 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.47190 * 180.02562 * 5 3 2 7 7 C 1.36939 * 119.99794 * 270.40461 * 6 5 3 8 8 H 1.07996 * 120.00192 * 188.06200 * 7 6 5 9 9 C 1.38819 * 119.99780 * 8.06911 * 7 6 5 10 10 N 1.31612 * 120.00039 * 25.11927 * 9 7 6 11 11 Si 1.86800 * 119.99758 * 205.11527 * 9 7 6 12 12 H 1.48496 * 109.47062 * 90.00066 * 11 9 7 13 13 H 1.48506 * 109.47143 * 210.00181 * 11 9 7 14 14 H 1.48502 * 109.47226 * 329.99992 * 11 9 7 15 15 C 1.46496 * 120.00267 * 90.40551 * 6 5 3 16 16 C 1.50697 * 109.47247 * 270.00020 * 15 6 5 17 17 C 1.38289 * 119.97385 * 270.29833 * 16 15 6 18 18 C 1.38244 * 120.11297 * 180.25364 * 17 16 15 19 19 C 1.38169 * 120.05221 * 359.44455 * 18 17 16 20 20 C 1.38709 * 119.94397 * 0.27811 * 19 18 17 21 21 O 1.35910 * 120.05362 * 179.97438 * 20 19 18 22 22 C 1.42895 * 116.99914 * 0.02562 * 21 20 19 23 23 C 1.53005 * 109.46828 * 179.97438 * 22 21 20 24 24 F 1.39904 * 109.46986 * 60.00061 * 23 22 21 25 25 F 1.39899 * 109.46957 * 179.97438 * 23 22 21 26 26 F 1.39892 * 109.47047 * 299.99950 * 23 22 21 27 27 C 1.38123 * 119.97360 * 89.99752 * 16 15 6 28 28 H 1.08995 * 109.47715 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46918 * 300.00398 * 1 2 3 30 30 H 1.09004 * 109.47015 * 59.99341 * 1 2 3 31 31 H 1.09002 * 109.47206 * 59.99906 * 5 3 2 32 32 H 1.09008 * 109.47618 * 299.99775 * 5 3 2 33 33 H 0.97006 * 119.99913 * 180.02562 * 10 9 7 34 34 H 1.09002 * 109.47358 * 150.00430 * 15 6 5 35 35 H 1.08994 * 109.47288 * 30.00165 * 15 6 5 36 36 H 1.07998 * 119.94697 * 0.02562 * 17 16 15 37 37 H 1.08000 * 119.97508 * 179.72362 * 18 17 16 38 38 H 1.08004 * 120.02928 * 180.25413 * 19 18 17 39 39 H 1.09006 * 109.47208 * 299.99748 * 22 21 20 40 40 H 1.08991 * 109.47292 * 59.99745 * 22 21 20 41 41 H 1.08004 * 120.02579 * 0.04620 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 7 3.9818 2.6795 0.0002 7 6 4.1675 3.3392 -1.1854 8 1 4.5972 4.3300 -1.1906 9 6 3.8031 2.7345 -2.3806 10 7 2.8700 1.8064 -2.3909 11 14 4.6371 3.2381 -3.9744 12 1 5.8342 2.3880 -4.1967 13 1 3.6900 3.0647 -5.1050 14 1 5.0501 4.6619 -3.8886 15 6 4.1987 3.3786 1.2691 16 6 2.9107 4.0213 1.7152 17 6 2.6072 5.3101 1.3161 18 6 1.4289 5.9043 1.7279 19 6 0.5460 5.2073 2.5302 20 6 0.8454 3.9124 2.9271 21 8 -0.0213 3.2249 3.7166 22 6 -1.2225 3.8971 4.1001 23 6 -2.0660 2.9721 4.9797 24 9 -1.3394 2.6264 6.1242 25 9 -3.2418 3.6304 5.3556 26 9 -2.3879 1.8139 4.2642 27 6 2.0313 3.3203 2.5172 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 3.9557 0.7807 -0.8908 32 1 3.9565 0.7804 0.8892 33 1 2.6156 1.3835 -3.2260 34 1 4.9606 4.1466 1.1353 35 1 4.5299 2.6661 2.0245 36 1 3.2936 5.8547 0.6847 37 1 1.1962 6.9126 1.4186 38 1 -0.3764 5.6705 2.8483 39 1 -0.9717 4.7998 4.6573 40 1 -1.7888 4.1661 3.2085 41 1 2.2669 2.3123 2.8252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080872679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:39 Heat of formation + Delta-G solvation = -211.714020 kcal Electronic energy + Delta-G solvation = -31946.501362 eV Core-core repulsion = 26992.658292 eV Total energy + Delta-G solvation = -4953.843069 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.31330 -47.87912 -47.74721 -39.93797 -38.86359 -37.55262 -35.77305 -34.43988 -32.07021 -31.07956 -30.22436 -28.88978 -28.00799 -26.05259 -25.76169 -23.83753 -22.31816 -22.06997 -20.64021 -19.68436 -18.83182 -18.78857 -17.90068 -17.36788 -16.89467 -16.13146 -15.86256 -15.61417 -15.45321 -15.23647 -15.05093 -14.70062 -14.66006 -14.57299 -14.22319 -13.93335 -13.92729 -13.92524 -13.67815 -13.30720 -12.98167 -12.93997 -12.42107 -12.27667 -12.09942 -11.83825 -11.52888 -11.22346 -11.11813 -11.02459 -10.87109 -10.78415 -10.56647 -10.37726 -10.18298 -9.98494 -9.51820 -9.04916 -8.56304 -8.22284 -7.79147 -7.19776 -5.99609 -3.25183 1.86793 1.97181 2.16110 3.00881 3.32531 3.39749 3.41520 3.53218 3.74377 3.96540 4.10367 4.19913 4.27646 4.47588 4.69069 4.75901 5.17983 5.21126 5.26875 5.39884 5.61897 5.77099 5.87544 5.88538 5.95376 6.02064 6.15475 6.17687 6.30653 6.40059 6.57297 6.67700 6.72490 6.91549 7.05288 7.10905 7.29862 7.61849 7.66410 7.86099 8.07587 8.93969 9.45835 9.65389 10.03337 11.10960 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015406 B = 0.003530 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.979208 B = 7929.951777 C = 8872.375017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.385 6.385 3 C 0.461 3.539 4 O -0.492 6.492 5 C 0.186 3.814 6 N -0.556 5.556 7 C -0.251 4.251 8 H 0.084 0.916 9 C 0.003 3.997 10 N -0.898 5.898 11 Si 0.910 3.090 12 H -0.286 1.286 13 H -0.293 1.293 14 H -0.280 1.280 15 C 0.173 3.827 16 C -0.034 4.034 17 C -0.125 4.125 18 C -0.086 4.086 19 C -0.221 4.221 20 C 0.117 3.883 21 O -0.305 6.305 22 C 0.018 3.982 23 C 0.464 3.536 24 F -0.175 7.175 25 F -0.176 7.176 26 F -0.173 7.173 27 C -0.117 4.117 28 H 0.077 0.923 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.115 0.885 32 H 0.052 0.948 33 H 0.258 0.742 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.598 2.646 12.723 14.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.303 6.303 3 C 0.300 3.700 4 O -0.376 6.376 5 C 0.057 3.943 6 N -0.274 5.274 7 C -0.380 4.380 8 H 0.101 0.899 9 C -0.195 4.195 10 N -0.542 5.542 11 Si 0.740 3.260 12 H -0.213 1.213 13 H -0.220 1.220 14 H -0.205 1.205 15 C 0.047 3.953 16 C -0.037 4.037 17 C -0.144 4.144 18 C -0.104 4.104 19 C -0.240 4.240 20 C 0.074 3.926 21 O -0.220 6.220 22 C -0.060 4.060 23 C 0.410 3.590 24 F -0.156 7.156 25 F -0.157 7.157 26 F -0.154 7.154 27 C -0.137 4.137 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.132 0.868 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.840 2.658 12.633 14.169 hybrid contribution -0.837 0.407 -1.102 1.443 sum -6.678 3.065 11.531 13.673 Atomic orbital electron populations 1.22798 0.79995 1.01063 1.01100 1.86528 1.20799 1.37003 1.85928 1.25362 0.93370 0.80357 0.70862 1.90508 1.66378 1.36045 1.44642 1.20567 0.85915 0.86323 1.01545 1.44546 1.74654 1.06931 1.01262 1.19330 1.34417 1.01597 0.82625 0.89861 1.24773 0.97274 0.99390 0.98093 1.69853 1.27662 1.30150 1.26540 0.86155 0.79005 0.78132 0.82714 1.21264 1.22009 1.20497 1.20163 0.91607 0.95431 0.88119 1.20796 0.98797 0.92891 0.91257 1.20858 0.97554 0.95518 1.00500 1.20751 0.93955 0.99096 0.96621 1.20871 1.01762 0.94838 1.06535 1.18749 0.89899 0.91072 0.92856 1.85998 1.28472 1.41481 1.66041 1.23650 0.87778 0.94550 1.00003 1.20089 0.78839 0.80369 0.79703 1.93223 1.77191 1.92819 1.52404 1.93207 1.49620 1.80932 1.91957 1.93239 1.93106 1.51371 1.77683 1.20019 0.92449 0.99818 1.01425 0.90402 0.93678 0.93118 0.86782 0.93036 0.93118 0.91353 0.92643 0.86388 0.86698 0.86811 0.87781 0.87721 0.86718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.86 10.56 101.05 1.07 1.92 16 2 O -0.38 -8.53 10.56 -39.26 -0.41 -8.94 16 3 C 0.46 11.05 5.80 36.00 0.21 11.26 16 4 O -0.49 -12.95 13.23 -18.75 -0.25 -13.20 16 5 C 0.19 4.18 5.59 -5.20 -0.03 4.15 16 6 N -0.56 -12.68 2.07 -175.99 -0.36 -13.05 16 7 C -0.25 -6.32 9.70 -15.06 -0.15 -6.47 16 8 H 0.08 2.04 7.93 -52.49 -0.42 1.63 16 9 C 0.00 0.08 4.90 -17.43 -0.09 -0.01 16 10 N -0.90 -24.60 8.94 55.49 0.50 -24.11 16 11 Si 0.91 20.84 29.62 -169.99 -5.04 15.80 16 12 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 C 0.17 3.26 5.83 -5.20 -0.03 3.23 16 16 C -0.03 -0.65 4.49 -104.65 -0.47 -1.12 16 17 C -0.13 -2.30 9.70 -39.56 -0.38 -2.68 16 18 C -0.09 -1.41 10.04 -39.60 -0.40 -1.81 16 19 C -0.22 -3.49 9.04 -39.43 -0.36 -3.85 16 20 C 0.12 2.05 6.69 -39.22 -0.26 1.79 16 21 O -0.31 -4.84 10.02 -19.46 -0.20 -5.03 16 22 C 0.02 0.20 4.70 37.16 0.17 0.38 16 23 C 0.46 5.34 3.32 37.16 0.12 5.46 16 24 F -0.17 -2.17 17.26 2.25 0.04 -2.13 16 25 F -0.18 -1.83 17.32 2.25 0.04 -1.79 16 26 F -0.17 -2.31 17.26 2.25 0.04 -2.27 16 27 C -0.12 -2.22 7.85 -39.44 -0.31 -2.53 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.04 0.84 8.14 -51.92 -0.42 0.42 16 30 H 0.05 1.02 8.13 -51.93 -0.42 0.59 16 31 H 0.11 2.78 6.30 -51.93 -0.33 2.46 16 32 H 0.05 0.99 7.89 -51.92 -0.41 0.58 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.07 1.19 7.97 -51.93 -0.41 0.78 16 35 H 0.06 0.92 7.83 -51.93 -0.41 0.51 16 36 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 37 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.11 1.42 6.30 -52.48 -0.33 1.09 16 39 H 0.10 0.92 7.66 -51.93 -0.40 0.52 16 40 H 0.10 1.08 7.66 -51.93 -0.40 0.68 16 41 H 0.11 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 362.25 15.07 5.46 5.46 Total: -1.00 -30.96 362.25 -5.85 -36.81 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -4.77 Total: 2.69 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: -0.90 Total: 9.74 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.13 Total: -37.15 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.86 Total: -27.17 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 0.12 Total: -6.18 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.04 Total: 15.80 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.96 -5.85 -36.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080872679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.901 kcal (2) G-P(sol) polarization free energy of solvation -30.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds