Wall clock time and date at job start Wed Apr 1 2020 04:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34230 * 117.00706 * 2 1 4 4 O 1.20828 * 119.99577 * 359.97438 * 3 2 1 5 5 C 1.50691 * 120.00275 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.47190 * 180.02562 * 5 3 2 7 7 C 1.36939 * 119.99794 * 270.40461 * 6 5 3 8 8 H 1.07996 * 120.00192 * 188.06200 * 7 6 5 9 9 C 1.38819 * 119.99780 * 8.06911 * 7 6 5 10 10 N 1.31612 * 120.00039 * 25.11927 * 9 7 6 11 11 Si 1.86800 * 119.99758 * 205.11527 * 9 7 6 12 12 H 1.48496 * 109.47062 * 90.00066 * 11 9 7 13 13 H 1.48506 * 109.47143 * 210.00181 * 11 9 7 14 14 H 1.48502 * 109.47226 * 329.99992 * 11 9 7 15 15 C 1.46496 * 120.00267 * 90.40551 * 6 5 3 16 16 C 1.50697 * 109.47247 * 270.00020 * 15 6 5 17 17 C 1.38289 * 119.97385 * 270.29833 * 16 15 6 18 18 C 1.38244 * 120.11297 * 180.25364 * 17 16 15 19 19 C 1.38169 * 120.05221 * 359.44455 * 18 17 16 20 20 C 1.38709 * 119.94397 * 0.27811 * 19 18 17 21 21 O 1.35910 * 120.05362 * 179.97438 * 20 19 18 22 22 C 1.42895 * 116.99914 * 0.02562 * 21 20 19 23 23 C 1.53005 * 109.46828 * 179.97438 * 22 21 20 24 24 F 1.39904 * 109.46986 * 60.00061 * 23 22 21 25 25 F 1.39899 * 109.46957 * 179.97438 * 23 22 21 26 26 F 1.39892 * 109.47047 * 299.99950 * 23 22 21 27 27 C 1.38123 * 119.97360 * 89.99752 * 16 15 6 28 28 H 1.08995 * 109.47715 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46918 * 300.00398 * 1 2 3 30 30 H 1.09004 * 109.47015 * 59.99341 * 1 2 3 31 31 H 1.09002 * 109.47206 * 59.99906 * 5 3 2 32 32 H 1.09008 * 109.47618 * 299.99775 * 5 3 2 33 33 H 0.97006 * 119.99913 * 180.02562 * 10 9 7 34 34 H 1.09002 * 109.47358 * 150.00430 * 15 6 5 35 35 H 1.08994 * 109.47288 * 30.00165 * 15 6 5 36 36 H 1.07998 * 119.94697 * 0.02562 * 17 16 15 37 37 H 1.08000 * 119.97508 * 179.72362 * 18 17 16 38 38 H 1.08004 * 120.02928 * 180.25413 * 19 18 17 39 39 H 1.09006 * 109.47208 * 299.99748 * 22 21 20 40 40 H 1.08991 * 109.47292 * 59.99745 * 22 21 20 41 41 H 1.08004 * 120.02579 * 0.04620 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 7 3.9818 2.6795 0.0002 7 6 4.1675 3.3392 -1.1854 8 1 4.5972 4.3300 -1.1906 9 6 3.8031 2.7345 -2.3806 10 7 2.8700 1.8064 -2.3909 11 14 4.6371 3.2381 -3.9744 12 1 5.8342 2.3880 -4.1967 13 1 3.6900 3.0647 -5.1050 14 1 5.0501 4.6619 -3.8886 15 6 4.1987 3.3786 1.2691 16 6 2.9107 4.0213 1.7152 17 6 2.6072 5.3101 1.3161 18 6 1.4289 5.9043 1.7279 19 6 0.5460 5.2073 2.5302 20 6 0.8454 3.9124 2.9271 21 8 -0.0213 3.2249 3.7166 22 6 -1.2225 3.8971 4.1001 23 6 -2.0660 2.9721 4.9797 24 9 -1.3394 2.6264 6.1242 25 9 -3.2418 3.6304 5.3556 26 9 -2.3879 1.8139 4.2642 27 6 2.0313 3.3203 2.5172 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 3.9557 0.7807 -0.8908 32 1 3.9565 0.7804 0.8892 33 1 2.6156 1.3835 -3.2260 34 1 4.9606 4.1466 1.1353 35 1 4.5299 2.6661 2.0245 36 1 3.2936 5.8547 0.6847 37 1 1.1962 6.9126 1.4186 38 1 -0.3764 5.6705 2.8483 39 1 -0.9717 4.7998 4.6573 40 1 -1.7888 4.1661 3.2085 41 1 2.2669 2.3123 2.8252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080872679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:38 Heat of formation + Delta-G solvation = -227.731745 kcal Electronic energy + Delta-G solvation = -31947.195942 eV Core-core repulsion = 26992.658292 eV Total energy + Delta-G solvation = -4954.537650 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.23899 -48.77837 -48.71949 -41.19399 -40.61608 -38.90214 -37.41705 -36.25453 -33.75431 -32.20988 -31.77379 -30.11700 -29.64628 -27.64424 -27.41137 -24.91245 -23.87027 -23.42542 -21.99951 -21.43195 -19.79720 -19.76789 -18.92433 -18.80395 -18.46948 -17.90313 -17.28422 -16.91423 -16.85337 -16.77432 -16.50531 -16.41111 -15.64289 -15.54776 -15.50345 -15.17858 -15.15620 -14.91996 -14.88620 -14.87047 -14.36996 -14.25496 -13.85211 -13.76172 -13.56127 -13.34158 -12.88440 -12.80653 -12.67964 -12.59023 -12.37093 -12.29015 -12.04658 -11.98232 -11.81608 -11.79153 -11.27744 -10.88236 -10.44798 -9.61784 -9.13631 -8.97596 -7.93098 -5.18874 0.54732 0.63434 1.19693 1.50703 1.53645 1.60162 2.00658 2.16670 2.39936 2.60036 2.62339 2.84554 2.94549 3.26786 3.29851 3.71753 3.82881 3.90921 4.00144 4.05088 4.28222 4.39326 4.41807 4.46724 4.55414 4.56569 4.64234 4.68293 4.88496 4.90078 5.09750 5.22834 5.23322 5.38328 5.58559 5.67582 5.82044 5.92478 6.07901 6.21248 6.39112 7.04000 7.61755 7.83946 8.17424 9.15763 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015406 B = 0.003530 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.979208 B = 7929.951777 C = 8872.375017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.392 6.392 3 C 0.462 3.538 4 O -0.520 6.520 5 C 0.185 3.815 6 N -0.568 5.568 7 C -0.247 4.247 8 H 0.086 0.914 9 C -0.047 4.047 10 N -0.926 5.926 11 Si 0.966 3.034 12 H -0.283 1.283 13 H -0.309 1.309 14 H -0.272 1.272 15 C 0.170 3.830 16 C -0.047 4.047 17 C -0.147 4.147 18 C -0.088 4.088 19 C -0.217 4.217 20 C 0.113 3.887 21 O -0.323 6.323 22 C 0.011 3.989 23 C 0.469 3.531 24 F -0.181 7.181 25 F -0.167 7.167 26 F -0.186 7.186 27 C -0.137 4.137 28 H 0.120 0.880 29 H 0.044 0.956 30 H 0.032 0.968 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.247 0.753 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.117 0.883 37 H 0.144 0.856 38 H 0.152 0.848 39 H 0.136 0.864 40 H 0.120 0.880 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.273 3.763 13.857 15.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.309 6.309 3 C 0.303 3.697 4 O -0.406 6.406 5 C 0.056 3.944 6 N -0.286 5.286 7 C -0.376 4.376 8 H 0.103 0.897 9 C -0.242 4.242 10 N -0.573 5.573 11 Si 0.796 3.204 12 H -0.210 1.210 13 H -0.237 1.237 14 H -0.197 1.197 15 C 0.045 3.955 16 C -0.050 4.050 17 C -0.166 4.166 18 C -0.106 4.106 19 C -0.235 4.235 20 C 0.069 3.931 21 O -0.238 6.238 22 C -0.066 4.066 23 C 0.415 3.585 24 F -0.163 7.163 25 F -0.148 7.148 26 F -0.168 7.168 27 C -0.157 4.157 28 H 0.138 0.862 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.057 0.943 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.135 0.865 37 H 0.162 0.838 38 H 0.170 0.830 39 H 0.154 0.846 40 H 0.138 0.862 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.504 3.787 13.809 15.726 hybrid contribution -0.730 0.081 -1.288 1.483 sum -7.234 3.868 12.521 14.969 Atomic orbital electron populations 1.23002 0.78132 1.03559 1.00153 1.86496 1.22651 1.36217 1.85577 1.25573 0.93876 0.80303 0.69950 1.90476 1.67088 1.36955 1.46032 1.20536 0.85375 0.86613 1.01873 1.44579 1.74834 1.07214 1.01949 1.19578 1.33025 1.01377 0.83670 0.89656 1.25374 0.98124 1.00186 1.00509 1.70006 1.29337 1.31843 1.26085 0.85274 0.77693 0.78114 0.79341 1.20964 1.23661 1.19664 1.20320 0.92074 0.96083 0.87030 1.20732 0.98644 0.93545 0.92123 1.21046 0.98765 0.95650 1.01180 1.21129 0.93124 1.00379 0.95933 1.21289 1.02832 0.94077 1.05350 1.18844 0.89752 0.91688 0.92789 1.85948 1.29658 1.42485 1.65706 1.23984 0.86346 0.95171 1.01061 1.20096 0.79047 0.79970 0.79429 1.93213 1.77397 1.92897 1.52767 1.93228 1.49090 1.80621 1.91850 1.93215 1.93236 1.52311 1.78004 1.20059 0.93625 0.99633 1.02340 0.86210 0.93722 0.94898 0.88954 0.89922 0.94337 0.90300 0.90579 0.86512 0.83808 0.83036 0.84617 0.86202 0.87641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.70 10.56 113.37 1.20 2.89 16 2 O -0.39 -17.33 10.56 -51.41 -0.54 -17.87 16 3 C 0.46 22.31 5.80 71.23 0.41 22.72 16 4 O -0.52 -27.58 13.23 21.96 0.29 -27.29 16 5 C 0.19 8.39 5.59 85.63 0.48 8.87 16 6 N -0.57 -25.82 2.07 -710.70 -1.47 -27.29 16 7 C -0.25 -12.44 9.70 84.03 0.82 -11.63 16 8 H 0.09 4.16 7.93 -2.91 -0.02 4.14 16 9 C -0.05 -2.48 4.90 84.86 0.42 -2.06 16 10 N -0.93 -51.84 8.94 21.65 0.19 -51.65 16 11 Si 0.97 43.42 29.62 68.60 2.03 45.45 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 13 H -0.31 -14.54 7.11 99.48 0.71 -13.84 16 14 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 15 C 0.17 6.31 5.83 85.63 0.50 6.81 16 16 C -0.05 -1.79 4.49 -19.88 -0.09 -1.88 16 17 C -0.15 -5.26 9.70 22.28 0.22 -5.05 16 18 C -0.09 -2.67 10.04 22.25 0.22 -2.45 16 19 C -0.22 -6.22 9.04 22.37 0.20 -6.01 16 20 C 0.11 3.75 6.69 22.50 0.15 3.90 16 21 O -0.32 -9.67 10.02 -92.54 -0.93 -10.60 16 22 C 0.01 0.22 4.70 71.98 0.34 0.56 16 23 C 0.47 9.84 3.32 71.98 0.24 10.07 16 24 F -0.18 -4.20 17.26 44.97 0.78 -3.43 16 25 F -0.17 -3.06 17.32 44.97 0.78 -2.28 16 26 F -0.19 -4.74 17.26 44.97 0.78 -3.97 16 27 C -0.14 -5.11 7.85 22.36 0.18 -4.93 16 28 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 29 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.03 1.31 8.13 -2.39 -0.02 1.29 16 31 H 0.09 4.60 6.30 -2.39 -0.02 4.59 16 32 H 0.08 3.13 7.89 -2.38 -0.02 3.11 16 33 H 0.25 13.86 8.31 -92.70 -0.77 13.09 16 34 H 0.08 2.70 7.97 -2.39 -0.02 2.68 16 35 H 0.08 2.45 7.83 -2.39 -0.02 2.43 16 36 H 0.12 4.07 8.06 -2.91 -0.02 4.05 16 37 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 38 H 0.15 3.08 6.30 -2.91 -0.02 3.06 16 39 H 0.14 1.86 7.66 -2.38 -0.02 1.84 16 40 H 0.12 2.06 7.66 -2.39 -0.02 2.04 16 41 H 0.11 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -67.23 362.25 8.25 -58.98 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 1.07 Total: 18.12 kcal Atomic # 6 Polarization: 16.55 SS G_CDS: 5.27 Total: 21.83 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: -1.28 Total: -78.94 kcal Atomic # 8 Polarization: -54.59 SS G_CDS: -1.18 Total: -55.77 kcal Atomic # 9 Polarization: -12.01 SS G_CDS: 2.33 Total: -9.67 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -67.23 8.25 -58.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080872679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.752 kcal (2) G-P(sol) polarization free energy of solvation -67.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds