Wall clock time and date at job start Wed Apr 1 2020 04:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 117.00071 * 2 1 4 4 O 1.20831 * 120.00182 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00285 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47400 * 180.02562 * 5 3 2 7 7 C 1.36941 * 119.99856 * 264.00794 * 6 5 3 8 8 H 1.07996 * 120.00257 * 196.18447 * 7 6 5 9 9 C 1.38809 * 120.00080 * 16.18311 * 7 6 5 10 10 N 1.31626 * 119.99854 * 22.15871 * 9 7 6 11 11 Si 1.86794 * 120.00161 * 202.15779 * 9 7 6 12 12 H 1.48500 * 109.47313 * 90.00099 * 11 9 7 13 13 H 1.48510 * 109.47182 * 210.00010 * 11 9 7 14 14 H 1.48502 * 109.47317 * 329.99818 * 11 9 7 15 15 C 1.46499 * 120.00310 * 84.00580 * 6 5 3 16 16 C 1.50699 * 109.47202 * 89.99852 * 15 6 5 17 17 C 1.38272 * 119.93993 * 90.00241 * 16 15 6 18 18 C 1.38144 * 120.05383 * 179.97438 * 17 16 15 19 19 C 1.38735 * 119.94416 * 0.02562 * 18 17 16 20 20 O 1.35900 * 120.05674 * 180.02562 * 19 18 17 21 21 C 1.42894 * 117.00336 * 179.97438 * 20 19 18 22 22 C 1.52997 * 109.47472 * 179.97438 * 21 20 19 23 23 F 1.39897 * 109.46853 * 60.00122 * 22 21 20 24 24 F 1.39905 * 109.47155 * 179.97438 * 22 21 20 25 25 F 1.39895 * 109.47272 * 300.00248 * 22 21 20 26 26 C 1.38736 * 119.88882 * 0.26826 * 19 18 17 27 27 C 1.38146 * 119.94251 * 359.47533 * 26 19 18 28 28 H 1.08999 * 109.47047 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46891 * 300.00069 * 1 2 3 30 30 H 1.08995 * 109.47013 * 60.00033 * 1 2 3 31 31 H 1.08995 * 109.47318 * 59.99165 * 5 3 2 32 32 H 1.09003 * 109.46556 * 299.99772 * 5 3 2 33 33 H 0.96993 * 120.00004 * 180.02562 * 10 9 7 34 34 H 1.09002 * 109.46918 * 330.00254 * 15 6 5 35 35 H 1.08996 * 109.47375 * 210.00334 * 15 6 5 36 36 H 1.07994 * 119.97479 * 0.02562 * 17 16 15 37 37 H 1.08001 * 120.02862 * 179.97438 * 18 17 16 38 38 H 1.09004 * 109.47353 * 300.00259 * 21 20 19 39 39 H 1.09005 * 109.47046 * 59.99884 * 21 20 19 40 40 H 1.07997 * 120.02498 * 179.72725 * 26 19 18 41 41 H 1.07992 * 119.97259 * 180.23152 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.2941 3.3020 -1.1791 8 1 4.8417 4.2328 -1.1700 9 6 3.9069 2.7363 -2.3861 10 7 2.9049 1.8836 -2.4219 11 14 4.8078 3.1853 -3.9596 12 1 5.9394 2.2464 -4.1673 13 1 3.8719 3.0945 -5.1091 14 1 5.3283 4.5721 -3.8536 15 6 4.0629 3.4190 1.2623 16 6 5.4459 3.2717 1.8427 17 6 6.4331 4.1819 1.5131 18 6 7.7015 4.0495 2.0442 19 6 7.9845 3.0017 2.9084 20 8 9.2313 2.8695 3.4326 21 6 9.4505 1.7675 4.3155 22 6 10.9015 1.7832 4.8004 23 9 11.1537 2.9808 5.4780 24 9 11.1158 0.7045 5.6652 25 9 11.7614 1.6788 3.7019 26 6 6.9938 2.0862 3.2327 27 6 5.7255 2.2262 2.7032 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.9558 0.7809 -0.8907 32 1 3.9563 0.7806 0.8892 33 1 2.6345 1.4880 -3.2652 34 1 3.3301 3.0210 1.9643 35 1 3.8559 4.4734 1.0798 36 1 6.2123 4.9976 0.8407 37 1 8.4725 4.7605 1.7862 38 1 8.7801 1.8485 5.1712 39 1 9.2543 0.8343 3.7874 40 1 7.2128 1.2673 3.9018 41 1 4.9530 1.5160 2.9582 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080895950.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:42 Heat of formation + Delta-G solvation = -218.468780 kcal Electronic energy + Delta-G solvation = -30342.026545 eV Core-core repulsion = 25387.890568 eV Total energy + Delta-G solvation = -4954.135978 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.44352 -48.00447 -47.88648 -40.18652 -39.02741 -37.83156 -35.83253 -34.58202 -32.06350 -31.08956 -30.53238 -29.51684 -28.00686 -26.07973 -25.51517 -24.15165 -22.49256 -22.12614 -20.79905 -19.71141 -19.14984 -18.96976 -18.04278 -17.86534 -16.92756 -16.34164 -16.05728 -15.65614 -15.49165 -15.25165 -14.91673 -14.83036 -14.76467 -14.70527 -14.35281 -14.06511 -14.06265 -14.05278 -13.72213 -13.50880 -13.23772 -13.12300 -12.68561 -12.52928 -12.27251 -12.02117 -11.53974 -11.47335 -11.18212 -11.10485 -11.00816 -10.84270 -10.62109 -10.41806 -10.13209 -10.03524 -9.68159 -9.22085 -8.76052 -8.59958 -7.95174 -7.11613 -5.96327 -3.29773 1.58354 1.64160 1.99178 2.82938 3.33876 3.38371 3.41397 3.42397 3.59880 3.77936 3.91395 4.04748 4.07027 4.45500 4.53187 4.59243 4.96488 4.98539 5.22440 5.40923 5.46596 5.52738 5.69186 5.75142 5.81028 5.81973 6.04136 6.04437 6.23624 6.32935 6.40587 6.48860 6.56263 6.75808 6.88353 6.98261 7.08405 7.35558 7.62764 7.70813 8.12664 8.96073 9.30580 9.65134 10.07433 11.14462 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.013418 B = 0.002594 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.301089 B =10792.879914 C =11878.172852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.383 6.383 3 C 0.463 3.537 4 O -0.506 6.506 5 C 0.190 3.810 6 N -0.559 5.559 7 C -0.256 4.256 8 H 0.081 0.919 9 C 0.003 3.997 10 N -0.902 5.902 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.293 1.293 14 H -0.279 1.279 15 C 0.182 3.818 16 C -0.103 4.103 17 C -0.061 4.061 18 C -0.142 4.142 19 C 0.104 3.896 20 O -0.305 6.305 21 C 0.016 3.984 22 C 0.465 3.535 23 F -0.175 7.175 24 F -0.174 7.174 25 F -0.173 7.173 26 C -0.207 4.207 27 C -0.075 4.075 28 H 0.080 0.920 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.114 0.886 32 H 0.050 0.950 33 H 0.257 0.743 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.120 0.880 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.510 -3.245 14.303 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.300 6.300 3 C 0.303 3.697 4 O -0.391 6.391 5 C 0.061 3.939 6 N -0.277 5.277 7 C -0.384 4.384 8 H 0.098 0.902 9 C -0.195 4.195 10 N -0.547 5.547 11 Si 0.738 3.262 12 H -0.213 1.213 13 H -0.219 1.219 14 H -0.204 1.204 15 C 0.055 3.945 16 C -0.106 4.106 17 C -0.079 4.079 18 C -0.161 4.161 19 C 0.060 3.940 20 O -0.220 6.220 21 C -0.061 4.061 22 C 0.410 3.590 23 F -0.156 7.156 24 F -0.156 7.156 25 F -0.155 7.155 26 C -0.225 4.225 27 C -0.094 4.094 28 H 0.099 0.901 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.132 0.868 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.138 0.862 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.390 -2.853 14.106 17.185 hybrid contribution 0.155 -0.038 -0.911 0.925 sum 9.546 -2.891 13.195 16.541 Atomic orbital electron populations 1.22862 0.79777 1.01360 1.01287 1.86545 1.21016 1.36736 1.85721 1.25610 0.93581 0.80196 0.70285 1.90469 1.66713 1.36481 1.45422 1.20282 0.85296 0.86820 1.01550 1.43897 1.74775 1.06980 1.02081 1.19254 1.29179 1.07289 0.82704 0.90160 1.24823 0.96675 1.00010 0.97976 1.69873 1.24838 1.34023 1.25928 0.86186 0.79128 0.78189 0.82669 1.21320 1.21911 1.20404 1.19777 0.89356 0.97389 0.87977 1.21021 0.99418 0.94478 0.95718 1.20926 0.91161 0.98890 0.96955 1.20379 0.97934 0.98291 0.99503 1.18789 0.82256 0.96618 0.96307 1.85990 1.30144 1.45883 1.59978 1.23701 0.91618 0.93582 0.97214 1.20066 0.89359 0.73855 0.75695 1.93228 1.95310 1.46390 1.80691 1.93222 1.95581 1.55931 1.70827 1.93237 1.73080 1.95681 1.53485 1.21080 0.94541 1.00895 1.06021 1.20831 0.95428 0.97159 0.95986 0.90103 0.93614 0.92818 0.86833 0.93201 0.93222 0.93312 0.91877 0.85153 0.85567 0.87544 0.87437 0.86164 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 10.56 101.05 1.07 1.79 16 2 O -0.38 -8.07 10.57 -39.24 -0.41 -8.48 16 3 C 0.46 10.95 6.18 36.01 0.22 11.17 16 4 O -0.51 -13.50 15.88 -18.75 -0.30 -13.80 16 5 C 0.19 4.25 5.48 -5.19 -0.03 4.23 16 6 N -0.56 -12.86 2.01 -175.99 -0.35 -13.22 16 7 C -0.26 -6.51 9.66 -15.06 -0.15 -6.66 16 8 H 0.08 1.99 7.92 -52.49 -0.42 1.57 16 9 C 0.00 0.09 4.86 -17.43 -0.08 0.00 16 10 N -0.90 -24.93 9.31 55.49 0.52 -24.41 16 11 Si 0.91 21.08 29.61 -169.99 -5.03 16.05 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 C 0.18 3.48 5.76 -5.19 -0.03 3.45 16 16 C -0.10 -1.70 5.46 -104.60 -0.57 -2.27 16 17 C -0.06 -0.94 9.69 -39.60 -0.38 -1.33 16 18 C -0.14 -2.03 9.99 -39.43 -0.39 -2.42 16 19 C 0.10 1.40 6.69 -39.21 -0.26 1.14 16 20 O -0.31 -3.74 10.02 -19.43 -0.19 -3.93 16 21 C 0.02 0.14 4.70 37.16 0.17 0.32 16 22 C 0.46 4.28 3.32 37.16 0.12 4.40 16 23 F -0.17 -1.82 17.26 2.25 0.04 -1.79 16 24 F -0.17 -1.50 17.32 2.25 0.04 -1.46 16 25 F -0.17 -1.88 17.26 2.25 0.04 -1.84 16 26 C -0.21 -2.60 9.04 -39.43 -0.36 -2.96 16 27 C -0.08 -1.08 9.69 -39.61 -0.38 -1.46 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 30 H 0.05 1.00 8.13 -51.93 -0.42 0.57 16 31 H 0.11 2.78 6.35 -51.93 -0.33 2.45 16 32 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 34 H 0.05 0.91 8.01 -51.93 -0.42 0.49 16 35 H 0.06 1.23 7.98 -51.93 -0.41 0.81 16 36 H 0.13 1.97 8.06 -52.49 -0.42 1.54 16 37 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 38 H 0.11 0.69 7.67 -51.93 -0.40 0.29 16 39 H 0.11 0.75 7.65 -51.93 -0.40 0.35 16 40 H 0.12 1.14 6.30 -52.49 -0.33 0.81 16 41 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 368.55 15.07 5.55 5.55 Total: -1.00 -31.29 368.55 -5.96 -37.25 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -4.80 Total: 0.68 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: -1.05 Total: 9.40 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.16 Total: -37.63 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.91 Total: -26.22 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.12 Total: -5.08 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.29 -5.96 -37.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080895950.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.223 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds