Wall clock time and date at job start Wed Apr 1 2020 04:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 117.00071 * 2 1 4 4 O 1.20831 * 120.00182 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00285 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47400 * 180.02562 * 5 3 2 7 7 C 1.36941 * 119.99856 * 264.00794 * 6 5 3 8 8 H 1.07996 * 120.00257 * 196.18447 * 7 6 5 9 9 C 1.38809 * 120.00080 * 16.18311 * 7 6 5 10 10 N 1.31626 * 119.99854 * 22.15871 * 9 7 6 11 11 Si 1.86794 * 120.00161 * 202.15779 * 9 7 6 12 12 H 1.48500 * 109.47313 * 90.00099 * 11 9 7 13 13 H 1.48510 * 109.47182 * 210.00010 * 11 9 7 14 14 H 1.48502 * 109.47317 * 329.99818 * 11 9 7 15 15 C 1.46499 * 120.00310 * 84.00580 * 6 5 3 16 16 C 1.50699 * 109.47202 * 89.99852 * 15 6 5 17 17 C 1.38272 * 119.93993 * 90.00241 * 16 15 6 18 18 C 1.38144 * 120.05383 * 179.97438 * 17 16 15 19 19 C 1.38735 * 119.94416 * 0.02562 * 18 17 16 20 20 O 1.35900 * 120.05674 * 180.02562 * 19 18 17 21 21 C 1.42894 * 117.00336 * 179.97438 * 20 19 18 22 22 C 1.52997 * 109.47472 * 179.97438 * 21 20 19 23 23 F 1.39897 * 109.46853 * 60.00122 * 22 21 20 24 24 F 1.39905 * 109.47155 * 179.97438 * 22 21 20 25 25 F 1.39895 * 109.47272 * 300.00248 * 22 21 20 26 26 C 1.38736 * 119.88882 * 0.26826 * 19 18 17 27 27 C 1.38146 * 119.94251 * 359.47533 * 26 19 18 28 28 H 1.08999 * 109.47047 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46891 * 300.00069 * 1 2 3 30 30 H 1.08995 * 109.47013 * 60.00033 * 1 2 3 31 31 H 1.08995 * 109.47318 * 59.99165 * 5 3 2 32 32 H 1.09003 * 109.46556 * 299.99772 * 5 3 2 33 33 H 0.96993 * 120.00004 * 180.02562 * 10 9 7 34 34 H 1.09002 * 109.46918 * 330.00254 * 15 6 5 35 35 H 1.08996 * 109.47375 * 210.00334 * 15 6 5 36 36 H 1.07994 * 119.97479 * 0.02562 * 17 16 15 37 37 H 1.08001 * 120.02862 * 179.97438 * 18 17 16 38 38 H 1.09004 * 109.47353 * 300.00259 * 21 20 19 39 39 H 1.09005 * 109.47046 * 59.99884 * 21 20 19 40 40 H 1.07997 * 120.02498 * 179.72725 * 26 19 18 41 41 H 1.07992 * 119.97259 * 180.23152 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.2941 3.3020 -1.1791 8 1 4.8417 4.2328 -1.1700 9 6 3.9069 2.7363 -2.3861 10 7 2.9049 1.8836 -2.4219 11 14 4.8078 3.1853 -3.9596 12 1 5.9394 2.2464 -4.1673 13 1 3.8719 3.0945 -5.1091 14 1 5.3283 4.5721 -3.8536 15 6 4.0629 3.4190 1.2623 16 6 5.4459 3.2717 1.8427 17 6 6.4331 4.1819 1.5131 18 6 7.7015 4.0495 2.0442 19 6 7.9845 3.0017 2.9084 20 8 9.2313 2.8695 3.4326 21 6 9.4505 1.7675 4.3155 22 6 10.9015 1.7832 4.8004 23 9 11.1537 2.9808 5.4780 24 9 11.1158 0.7045 5.6652 25 9 11.7614 1.6788 3.7019 26 6 6.9938 2.0862 3.2327 27 6 5.7255 2.2262 2.7032 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.9558 0.7809 -0.8907 32 1 3.9563 0.7806 0.8892 33 1 2.6345 1.4880 -3.2652 34 1 3.3301 3.0210 1.9643 35 1 3.8559 4.4734 1.0798 36 1 6.2123 4.9976 0.8407 37 1 8.4725 4.7605 1.7862 38 1 8.7801 1.8485 5.1712 39 1 9.2543 0.8343 3.7874 40 1 7.2128 1.2673 3.9018 41 1 4.9530 1.5160 2.9582 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080895950.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:42 Heat of formation + Delta-G solvation = -234.691555 kcal Electronic energy + Delta-G solvation = -30342.730018 eV Core-core repulsion = 25387.890568 eV Total energy + Delta-G solvation = -4954.839450 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.17577 -48.71803 -48.66082 -41.19606 -40.77704 -38.98758 -37.45287 -36.37631 -33.68205 -32.18749 -31.72789 -30.66923 -29.59392 -27.65007 -27.04455 -24.98593 -24.00217 -23.22293 -22.11402 -21.40622 -19.96418 -19.70569 -18.91051 -18.80448 -18.63084 -18.11026 -17.34221 -16.94844 -16.84780 -16.57021 -16.50258 -16.11350 -15.59385 -15.51290 -15.46286 -15.27149 -15.09629 -14.96988 -14.82585 -14.81154 -14.35144 -14.23972 -14.06938 -13.96513 -13.56554 -13.30585 -12.97538 -12.79821 -12.74701 -12.57520 -12.48663 -12.29808 -12.14102 -11.95611 -11.86769 -11.64838 -11.38431 -11.07703 -10.53155 -9.83735 -9.11104 -8.91190 -7.93323 -5.26374 0.50310 0.52141 1.24327 1.48686 1.51443 1.58241 1.98199 2.05231 2.32477 2.55667 2.69010 2.87011 2.93954 3.28309 3.31885 3.71287 3.85503 3.98072 3.98830 4.07527 4.20824 4.38325 4.40273 4.46793 4.52145 4.57622 4.65327 4.70326 4.83514 4.90269 5.09979 5.16480 5.20716 5.32567 5.49819 5.65115 5.80801 5.89367 5.94342 6.23613 6.33399 7.04000 7.48469 7.79732 8.18023 9.15121 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.013418 B = 0.002594 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.301089 B =10792.879914 C =11878.172852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.385 6.385 3 C 0.466 3.534 4 O -0.545 6.545 5 C 0.191 3.809 6 N -0.572 5.572 7 C -0.253 4.253 8 H 0.081 0.919 9 C -0.047 4.047 10 N -0.929 5.929 11 Si 0.964 3.036 12 H -0.284 1.284 13 H -0.304 1.304 14 H -0.272 1.272 15 C 0.186 3.814 16 C -0.123 4.123 17 C -0.072 4.072 18 C -0.153 4.153 19 C 0.110 3.890 20 O -0.319 6.319 21 C 0.010 3.990 22 C 0.467 3.533 23 F -0.184 7.184 24 F -0.169 7.169 25 F -0.185 7.185 26 C -0.198 4.198 27 C -0.077 4.077 28 H 0.126 0.874 29 H 0.054 0.946 30 H 0.033 0.967 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.248 0.752 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.123 0.877 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.130 0.870 40 H 0.159 0.841 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.625 -4.559 16.034 19.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.302 6.302 3 C 0.308 3.692 4 O -0.433 6.433 5 C 0.062 3.938 6 N -0.291 5.291 7 C -0.382 4.382 8 H 0.098 0.902 9 C -0.242 4.242 10 N -0.576 5.576 11 Si 0.794 3.206 12 H -0.211 1.211 13 H -0.232 1.232 14 H -0.197 1.197 15 C 0.061 3.939 16 C -0.125 4.125 17 C -0.091 4.091 18 C -0.172 4.172 19 C 0.066 3.934 20 O -0.233 6.233 21 C -0.067 4.067 22 C 0.413 3.587 23 F -0.165 7.165 24 F -0.150 7.150 25 F -0.167 7.167 26 C -0.216 4.216 27 C -0.095 4.095 28 H 0.144 0.856 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.141 0.859 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.148 0.852 40 H 0.177 0.823 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.535 -4.172 15.878 19.507 hybrid contribution -0.149 0.337 -1.303 1.354 sum 10.387 -3.835 14.575 18.304 Atomic orbital electron populations 1.23169 0.77500 1.04197 1.00754 1.86503 1.23233 1.35335 1.85128 1.25822 0.94111 0.80201 0.69101 1.90442 1.67645 1.37821 1.47395 1.20296 0.84721 0.86769 1.02033 1.44080 1.74925 1.07466 1.02626 1.19522 1.27863 1.06989 0.83851 0.90171 1.25439 0.97532 1.00845 1.00355 1.70019 1.26319 1.35603 1.25615 0.85303 0.77766 0.78167 0.79396 1.21069 1.23153 1.19688 1.19768 0.91424 0.96101 0.86621 1.20680 0.97779 0.96376 0.97696 1.20900 0.91828 0.98922 0.97426 1.20488 0.97562 0.99186 0.99916 1.18850 0.82922 0.96137 0.95505 1.85959 1.29372 1.47447 1.60544 1.24036 0.91394 0.93316 0.97926 1.20175 0.89582 0.73608 0.75369 1.93213 1.95417 1.47045 1.80870 1.93234 1.95581 1.55593 1.70619 1.93217 1.73633 1.95720 1.54128 1.21399 0.93245 1.01365 1.05619 1.21001 0.96705 0.96514 0.95322 0.85574 0.92759 0.94790 0.89089 0.89572 0.94243 0.92993 0.93287 0.85896 0.84658 0.84754 0.85221 0.82343 0.84629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.26 10.56 113.37 1.20 2.46 16 2 O -0.39 -15.94 10.57 -51.37 -0.54 -16.48 16 3 C 0.47 22.06 6.18 71.24 0.44 22.50 16 4 O -0.54 -29.53 15.88 21.95 0.35 -29.18 16 5 C 0.19 8.52 5.48 85.63 0.47 8.99 16 6 N -0.57 -26.46 2.01 -710.71 -1.43 -27.89 16 7 C -0.25 -13.04 9.66 84.03 0.81 -12.23 16 8 H 0.08 4.03 7.92 -2.91 -0.02 4.01 16 9 C -0.05 -2.50 4.86 84.86 0.41 -2.09 16 10 N -0.93 -52.47 9.31 21.65 0.20 -52.27 16 11 Si 0.96 44.07 29.61 68.60 2.03 46.10 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 15 C 0.19 7.16 5.76 85.63 0.49 7.66 16 16 C -0.12 -3.92 5.46 -19.85 -0.11 -4.03 16 17 C -0.07 -2.21 9.69 22.26 0.22 -2.00 16 18 C -0.15 -4.15 9.99 22.37 0.22 -3.93 16 19 C 0.11 2.65 6.69 22.51 0.15 2.80 16 20 O -0.32 -6.84 10.02 -92.43 -0.93 -7.77 16 21 C 0.01 0.13 4.70 71.98 0.34 0.47 16 22 C 0.47 7.42 3.32 71.98 0.24 7.66 16 23 F -0.18 -3.48 17.26 44.97 0.78 -2.71 16 24 F -0.17 -2.45 17.32 44.97 0.78 -1.67 16 25 F -0.19 -3.68 17.26 44.97 0.78 -2.90 16 26 C -0.20 -4.24 9.04 22.37 0.20 -4.04 16 27 C -0.08 -2.00 9.69 22.25 0.22 -1.79 16 28 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 29 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 30 H 0.03 1.25 8.13 -2.39 -0.02 1.23 16 31 H 0.09 4.50 6.35 -2.39 -0.02 4.49 16 32 H 0.09 3.13 8.12 -2.39 -0.02 3.11 16 33 H 0.25 13.95 8.31 -92.71 -0.77 13.17 16 34 H 0.05 1.92 8.01 -2.39 -0.02 1.90 16 35 H 0.05 1.97 7.98 -2.39 -0.02 1.95 16 36 H 0.12 3.81 8.06 -2.91 -0.02 3.79 16 37 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 38 H 0.13 1.09 7.67 -2.38 -0.02 1.07 16 39 H 0.13 1.21 7.65 -2.38 -0.02 1.19 16 40 H 0.16 2.12 6.30 -2.91 -0.02 2.10 16 41 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -68.61 368.55 8.38 -60.23 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 1.07 Total: 12.11 kcal Atomic # 6 Polarization: 17.13 SS G_CDS: 5.30 Total: 22.43 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -1.23 Total: -80.16 kcal Atomic # 8 Polarization: -52.31 SS G_CDS: -1.12 Total: -53.43 kcal Atomic # 9 Polarization: -9.61 SS G_CDS: 2.33 Total: -7.28 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -68.61 8.38 -60.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080895950.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.463 kcal (2) G-P(sol) polarization free energy of solvation -68.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds