Wall clock time and date at job start Wed Apr 1 2020 04:36:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81396 * 1
3 3 O 1.42099 * 109.47127 * 2 1
4 4 C 1.81399 * 103.00225 * 243.61048 * 2 1 3
5 5 C 1.50695 * 109.47249 * 180.02562 * 4 2 1
6 6 C 1.38391 * 119.92589 * 269.97448 * 5 4 2
7 7 C 1.38340 * 120.29363 * 179.97438 * 6 5 4
8 8 C 1.37980 * 120.14782 * 359.75288 * 7 6 5
9 9 C 1.39566 * 119.84893 * 0.52520 * 8 7 6
10 10 C 1.47811 * 120.14730 * 179.74900 * 9 8 7
11 11 O 1.21570 * 120.00458 * 179.72483 * 10 9 8
12 12 N 1.34780 * 119.99885 * 359.72207 * 10 9 8
13 13 C 1.40078 * 120.00260 * 180.02562 * 12 10 9
14 14 C 1.40428 * 125.97544 * 359.97097 * 13 12 10
15 15 C 1.35236 * 107.86894 * 179.77547 * 14 13 12
16 16 N 1.34972 * 107.86406 * 0.36756 * 15 14 13
17 17 C 1.46495 * 125.97661 * 179.89664 * 16 15 14
18 18 C 1.50702 * 109.47571 * 124.71645 * 17 16 15
19 19 H 1.08002 * 119.99446 * 359.97438 * 18 17 16
20 20 C 1.37871 * 120.00072 * 180.02562 * 18 17 16
21 21 N 1.31516 * 119.99826 * 179.72119 * 20 18 17
22 22 Si 1.86800 * 120.00406 * 359.97438 * 20 18 17
23 23 H 1.48501 * 109.46758 * 269.72576 * 22 20 18
24 24 H 1.48499 * 109.47026 * 29.72423 * 22 20 18
25 25 H 1.48496 * 109.47474 * 149.72459 * 22 20 18
26 26 N 1.31231 * 125.98044 * 179.97438 * 13 12 10
27 27 C 1.37933 * 119.92846 * 90.00212 * 5 4 2
28 28 H 1.09001 * 109.47072 * 176.38974 * 1 2 3
29 29 H 1.09005 * 109.47319 * 296.39153 * 1 2 3
30 30 H 1.08999 * 109.46943 * 56.38854 * 1 2 3
31 31 H 1.09001 * 109.46959 * 60.00198 * 4 2 1
32 32 H 1.08999 * 109.47056 * 300.00100 * 4 2 1
33 33 H 1.08000 * 119.85033 * 0.03329 * 6 5 4
34 34 H 1.07999 * 119.92519 * 180.02562 * 7 6 5
35 35 H 1.07997 * 120.07536 * 180.27257 * 8 7 6
36 36 H 0.97004 * 119.99593 * 359.97438 * 12 10 9
37 37 H 1.07995 * 126.06473 * 0.04057 * 14 13 12
38 38 H 1.08000 * 126.07141 * 180.26280 * 15 14 13
39 39 H 1.09000 * 109.47378 * 4.71304 * 17 16 15
40 40 H 1.09001 * 109.47153 * 244.71425 * 17 16 15
41 41 H 0.96999 * 120.00128 * 180.27192 * 21 20 18
42 42 H 1.07993 * 120.07081 * 0.02562 * 27 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 8 2.2876 1.3397 0.0000
4 6 2.2221 -0.7856 -1.5833
5 6 3.7194 -0.8616 -1.7351
6 6 4.4059 0.1777 -2.3382
7 6 5.7805 0.1161 -2.4810
8 6 6.4769 -0.9813 -2.0179
9 6 5.7901 -2.0356 -1.4140
10 6 6.5288 -3.2169 -0.9205
11 8 5.9285 -4.1316 -0.3904
12 7 7.8681 -3.2801 -1.0582
13 6 8.5682 -4.3998 -0.5910
14 6 8.0046 -5.5220 0.0376
15 6 9.0074 -6.3805 0.3311
16 7 10.1642 -5.8242 -0.0860
17 6 11.4981 -6.4167 0.0383
18 6 12.1479 -6.4813 -1.3199
19 1 11.6197 -6.1176 -2.1889
20 6 13.4160 -7.0055 -1.4532
21 7 13.9808 -7.0668 -2.6393
22 14 14.3293 -7.6351 0.0497
23 1 15.1238 -6.5306 0.6448
24 1 13.3518 -8.1359 1.0491
25 1 15.2383 -8.7393 -0.3498
26 7 9.8655 -4.5837 -0.6641
27 6 4.4027 -1.9673 -1.2733
28 1 -0.3633 -1.0256 -0.0647
29 1 -0.3634 0.4568 0.9206
30 1 -0.3633 0.5689 -0.8559
31 1 1.8032 -0.1970 -2.3995
32 1 1.8032 -1.7916 -1.6084
33 1 3.8661 1.0412 -2.6980
34 1 6.3103 0.9308 -2.9522
35 1 7.5505 -1.0263 -2.1260
36 1 8.3470 -2.5505 -1.4816
37 1 6.9558 -5.6744 0.2455
38 1 8.9016 -7.3403 0.8150
39 1 11.4119 -7.4231 0.4480
40 1 12.1071 -5.8046 0.7036
41 1 14.8715 -7.4393 -2.7338
42 1 3.8657 -2.7780 -0.8037
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000117855903.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:36:59
Heat of formation + Delta-G solvation = 46.774629 kcal
Electronic energy + Delta-G solvation = -26073.802001 eV
Core-core repulsion = 22148.070203 eV
Total energy + Delta-G solvation = -3925.731798 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-40.90816 -40.03049 -38.55108 -36.11299 -34.93814 -33.59521 -33.06164 -31.64213
-31.02419 -29.50661 -29.41781 -27.58330 -27.07847 -24.60998 -22.55964 -22.24309
-21.41315 -20.23803 -19.51596 -18.08813 -17.64897 -17.07288 -16.59345 -16.32014
-15.94177 -15.82342 -15.39454 -15.29025 -15.20802 -14.70503 -14.43013 -14.34144
-14.00809 -13.71093 -13.47487 -13.21178 -13.09972 -13.05134 -12.79561 -12.57218
-12.39435 -12.20861 -12.10480 -11.91392 -11.51125 -11.17394 -10.90250 -10.84201
-10.54241 -10.14949 -10.00829 -9.72483 -9.53889 -9.30144 -9.26517 -8.77524
-8.54308 -8.21875 -7.55632 -6.24240 -4.26752 0.46177 0.77333 1.29975
2.14099 2.43172 2.65773 2.85221 3.15813 3.20676 3.23870 3.30995
3.44853 3.72846 3.80901 4.15401 4.22098 4.35582 4.48047 4.62360
4.70581 4.76162 4.78654 4.93139 5.03686 5.11102 5.18638 5.38916
5.42588 5.49651 5.63210 5.68687 5.95042 6.01720 6.09244 6.16148
6.37487 6.42218 6.49104 6.55602 6.63309 7.23520 7.30780 7.52987
7.79445 8.15539 8.32257 8.53278 8.85316 9.30563 10.88395
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.028102 B = 0.001796 C = 0.001733
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 996.128172 B =15585.553601 C =16156.089286
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.495 4.495
2 S 1.250 4.750
3 O -0.842 6.842
4 C -0.406 4.406
5 C -0.080 4.080
6 C -0.085 4.085
7 C -0.120 4.120
8 C -0.083 4.083
9 C -0.123 4.123
10 C 0.566 3.434
11 O -0.513 6.513
12 N -0.625 5.625
13 C 0.260 3.740
14 C -0.282 4.282
15 C 0.052 3.948
16 N -0.318 5.318
17 C 0.232 3.768
18 C -0.535 4.535
19 H 0.086 0.914
20 C 0.076 3.924
21 N -0.887 5.887
22 Si 0.875 3.125
23 H -0.272 1.272
24 H -0.265 1.265
25 H -0.281 1.281
26 N -0.296 5.296
27 C -0.052 4.052
28 H 0.114 0.886
29 H 0.106 0.894
30 H 0.079 0.921
31 H 0.096 0.904
32 H 0.131 0.869
33 H 0.124 0.876
34 H 0.132 0.868
35 H 0.131 0.869
36 H 0.411 0.589
37 H 0.163 0.837
38 H 0.170 0.830
39 H 0.054 0.946
40 H 0.038 0.962
41 H 0.268 0.732
42 H 0.147 0.853
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.773 11.719 5.193 28.785
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.652 4.652
2 S 1.448 4.552
3 O -0.837 6.837
4 C -0.541 4.541
5 C -0.081 4.081
6 C -0.104 4.104
7 C -0.138 4.138
8 C -0.103 4.103
9 C -0.126 4.126
10 C 0.353 3.647
11 O -0.388 6.388
12 N -0.273 5.273
13 C 0.006 3.994
14 C -0.313 4.313
15 C -0.097 4.097
16 N -0.100 5.100
17 C 0.113 3.887
18 C -0.573 4.573
19 H 0.104 0.896
20 C -0.128 4.128
21 N -0.525 5.525
22 Si 0.701 3.299
23 H -0.197 1.197
24 H -0.189 1.189
25 H -0.206 1.206
26 N -0.127 5.127
27 C -0.072 4.072
28 H 0.133 0.867
29 H 0.125 0.875
30 H 0.098 0.902
31 H 0.115 0.885
32 H 0.149 0.851
33 H 0.142 0.858
34 H 0.150 0.850
35 H 0.149 0.851
36 H 0.248 0.752
37 H 0.180 0.820
38 H 0.187 0.813
39 H 0.072 0.928
40 H 0.056 0.944
41 H 0.078 0.922
42 H 0.164 0.836
Dipole moment (debyes) X Y Z Total
from point charges -24.223 11.810 5.799 27.566
hybrid contribution -0.663 0.842 -1.259 1.653
sum -24.886 12.652 4.540 28.285
Atomic orbital electron populations
1.27700 1.22027 1.08197 1.07293 1.71078 0.86116 0.99186 0.98824
1.93143 1.73371 1.36544 1.80673 1.26694 0.97593 1.11338 1.18456
1.18978 0.92957 0.95202 1.01013 1.21280 0.94674 0.97652 0.96802
1.21090 0.94014 0.98358 1.00289 1.21446 1.00232 0.92854 0.95735
1.19775 0.94354 0.94984 1.03532 1.18115 0.80888 0.86588 0.79120
1.90705 1.67760 1.38006 1.42330 1.42330 1.06612 1.19365 1.58949
1.19065 0.90807 0.89322 1.00180 1.21553 1.01102 0.95013 1.13659
1.22568 0.85912 0.99844 1.01421 1.48629 1.07673 1.11953 1.41722
1.20065 0.75957 0.92926 0.99783 1.21108 1.01291 1.42586 0.92335
0.89645 1.24836 0.96793 0.95050 0.96095 1.69873 1.15544 1.44632
1.22406 0.86885 0.80562 0.79335 0.83133 1.19714 1.18941 1.20595
1.77402 1.11377 1.01836 1.22066 1.21133 0.92572 0.97101 0.96400
0.86717 0.87524 0.90168 0.88491 0.85076 0.85826 0.84995 0.85074
0.75240 0.81954 0.81309 0.92844 0.94427 0.92173 0.83563
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.49 -1.76 10.74 101.05 1.09 -0.68 16
2 S 1.25 6.55 13.78 -107.50 -1.48 5.06 16
3 O -0.84 -10.14 18.14 -35.23 -0.64 -10.78 16
4 C -0.41 -2.10 6.05 36.00 0.22 -1.89 16
5 C -0.08 -0.66 5.13 -104.68 -0.54 -1.19 16
6 C -0.08 -0.75 9.69 -39.49 -0.38 -1.13 16
7 C -0.12 -1.02 10.03 -39.64 -0.40 -1.42 16
8 C -0.08 -0.78 9.54 -39.18 -0.37 -1.15 16
9 C -0.12 -1.34 5.87 -104.97 -0.62 -1.96 16
10 C 0.57 7.97 7.74 -12.34 -0.10 7.87 16
11 O -0.51 -8.30 13.47 5.30 0.07 -8.23 16
12 N -0.63 -9.53 5.40 -12.00 -0.06 -9.60 16
13 C 0.26 5.06 8.11 -154.45 -1.25 3.81 16
14 C -0.28 -5.29 9.60 -39.83 -0.38 -5.68 16
15 C 0.05 0.97 11.44 -17.24 -0.20 0.77 16
16 N -0.32 -7.07 3.67 -62.56 -0.23 -7.30 16
17 C 0.23 5.41 5.33 -5.20 -0.03 5.38 16
18 C -0.54 -14.95 9.79 -34.44 -0.34 -15.29 16
19 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16
20 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16
21 N -0.89 -26.41 13.96 55.43 0.77 -25.63 16
22 Si 0.87 19.96 27.47 -169.99 -4.67 15.29 16
23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16
24 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16
25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
26 N -0.30 -6.67 12.42 31.43 0.39 -6.28 16
27 C -0.05 -0.47 9.24 -39.18 -0.36 -0.84 16
28 H 0.11 0.12 8.14 -51.92 -0.42 -0.31 16
29 H 0.11 0.37 8.14 -51.92 -0.42 -0.05 16
30 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16
31 H 0.10 0.51 8.08 -51.92 -0.42 0.09 16
32 H 0.13 0.31 8.08 -51.92 -0.42 -0.11 16
33 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16
34 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16
35 H 0.13 1.01 6.40 -52.49 -0.34 0.68 16
36 H 0.41 5.19 6.86 -40.82 -0.28 4.91 16
37 H 0.16 2.89 5.91 -52.49 -0.31 2.58 16
38 H 0.17 2.47 8.06 -52.49 -0.42 2.05 16
39 H 0.05 1.14 7.12 -51.93 -0.37 0.77 16
40 H 0.04 0.86 7.57 -51.93 -0.39 0.47 16
41 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16
42 H 0.15 1.10 7.65 -52.49 -0.40 0.70 16
LS Contribution 375.48 15.07 5.66 5.66
Total: -1.00 -39.00 375.48 -9.00 -48.01
By element:
Atomic # 1 Polarization: 10.23 SS G_CDS: -5.06 Total: 5.17 kcal
Atomic # 6 Polarization: -7.62 SS G_CDS: -3.76 Total: -11.38 kcal
Atomic # 7 Polarization: -49.67 SS G_CDS: 0.87 Total: -48.80 kcal
Atomic # 8 Polarization: -18.44 SS G_CDS: -0.57 Total: -19.01 kcal
Atomic # 14 Polarization: 19.96 SS G_CDS: -4.67 Total: 15.29 kcal
Atomic # 16 Polarization: 6.55 SS G_CDS: -1.48 Total: 5.06 kcal
Total LS contribution 5.66 Total: 5.66 kcal
Total: -39.00 -9.00 -48.01 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000117855903.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.781 kcal
(2) G-P(sol) polarization free energy of solvation -39.002 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.779 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.006 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.775 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds