Wall clock time and date at job start Wed Apr 1 2020 04:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42099 * 109.47127 * 2 1 4 4 C 1.81399 * 103.00225 * 243.61048 * 2 1 3 5 5 C 1.50695 * 109.47249 * 180.02562 * 4 2 1 6 6 C 1.38391 * 119.92589 * 269.97448 * 5 4 2 7 7 C 1.38340 * 120.29363 * 179.97438 * 6 5 4 8 8 C 1.37980 * 120.14782 * 359.75288 * 7 6 5 9 9 C 1.39566 * 119.84893 * 0.52520 * 8 7 6 10 10 C 1.47811 * 120.14730 * 179.74900 * 9 8 7 11 11 O 1.21570 * 120.00458 * 179.72483 * 10 9 8 12 12 N 1.34780 * 119.99885 * 359.72207 * 10 9 8 13 13 C 1.40078 * 120.00260 * 180.02562 * 12 10 9 14 14 C 1.40428 * 125.97544 * 359.97097 * 13 12 10 15 15 C 1.35236 * 107.86894 * 179.77547 * 14 13 12 16 16 N 1.34972 * 107.86406 * 0.36756 * 15 14 13 17 17 C 1.46495 * 125.97661 * 179.89664 * 16 15 14 18 18 C 1.50702 * 109.47571 * 124.71645 * 17 16 15 19 19 H 1.08002 * 119.99446 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00072 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 179.72119 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72576 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72423 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72459 * 22 20 18 26 26 N 1.31231 * 125.98044 * 179.97438 * 13 12 10 27 27 C 1.37933 * 119.92846 * 90.00212 * 5 4 2 28 28 H 1.09001 * 109.47072 * 176.38974 * 1 2 3 29 29 H 1.09005 * 109.47319 * 296.39153 * 1 2 3 30 30 H 1.08999 * 109.46943 * 56.38854 * 1 2 3 31 31 H 1.09001 * 109.46959 * 60.00198 * 4 2 1 32 32 H 1.08999 * 109.47056 * 300.00100 * 4 2 1 33 33 H 1.08000 * 119.85033 * 0.03329 * 6 5 4 34 34 H 1.07999 * 119.92519 * 180.02562 * 7 6 5 35 35 H 1.07997 * 120.07536 * 180.27257 * 8 7 6 36 36 H 0.97004 * 119.99593 * 359.97438 * 12 10 9 37 37 H 1.07995 * 126.06473 * 0.04057 * 14 13 12 38 38 H 1.08000 * 126.07141 * 180.26280 * 15 14 13 39 39 H 1.09000 * 109.47378 * 4.71304 * 17 16 15 40 40 H 1.09001 * 109.47153 * 244.71425 * 17 16 15 41 41 H 0.96999 * 120.00128 * 180.27192 * 21 20 18 42 42 H 1.07993 * 120.07081 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2221 -0.7856 -1.5833 5 6 3.7194 -0.8616 -1.7351 6 6 4.4059 0.1777 -2.3382 7 6 5.7805 0.1161 -2.4810 8 6 6.4769 -0.9813 -2.0179 9 6 5.7901 -2.0356 -1.4140 10 6 6.5288 -3.2169 -0.9205 11 8 5.9285 -4.1316 -0.3904 12 7 7.8681 -3.2801 -1.0582 13 6 8.5682 -4.3998 -0.5910 14 6 8.0046 -5.5220 0.0376 15 6 9.0074 -6.3805 0.3311 16 7 10.1642 -5.8242 -0.0860 17 6 11.4981 -6.4167 0.0383 18 6 12.1479 -6.4813 -1.3199 19 1 11.6197 -6.1176 -2.1889 20 6 13.4160 -7.0055 -1.4532 21 7 13.9808 -7.0668 -2.6393 22 14 14.3293 -7.6351 0.0497 23 1 15.1238 -6.5306 0.6448 24 1 13.3518 -8.1359 1.0491 25 1 15.2383 -8.7393 -0.3498 26 7 9.8655 -4.5837 -0.6641 27 6 4.4027 -1.9673 -1.2733 28 1 -0.3633 -1.0256 -0.0647 29 1 -0.3634 0.4568 0.9206 30 1 -0.3633 0.5689 -0.8559 31 1 1.8032 -0.1970 -2.3995 32 1 1.8032 -1.7916 -1.6084 33 1 3.8661 1.0412 -2.6980 34 1 6.3103 0.9308 -2.9522 35 1 7.5505 -1.0263 -2.1260 36 1 8.3470 -2.5505 -1.4816 37 1 6.9558 -5.6744 0.2455 38 1 8.9016 -7.3403 0.8150 39 1 11.4119 -7.4231 0.4480 40 1 12.1071 -5.8046 0.7036 41 1 14.8715 -7.4393 -2.7338 42 1 3.8657 -2.7780 -0.8037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117855903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:59 Heat of formation + Delta-G solvation = 46.774629 kcal Electronic energy + Delta-G solvation = -26073.802001 eV Core-core repulsion = 22148.070203 eV Total energy + Delta-G solvation = -3925.731798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.90816 -40.03049 -38.55108 -36.11299 -34.93814 -33.59521 -33.06164 -31.64213 -31.02419 -29.50661 -29.41781 -27.58330 -27.07847 -24.60998 -22.55964 -22.24309 -21.41315 -20.23803 -19.51596 -18.08813 -17.64897 -17.07288 -16.59345 -16.32014 -15.94177 -15.82342 -15.39454 -15.29025 -15.20802 -14.70503 -14.43013 -14.34144 -14.00809 -13.71093 -13.47487 -13.21178 -13.09972 -13.05134 -12.79561 -12.57218 -12.39435 -12.20861 -12.10480 -11.91392 -11.51125 -11.17394 -10.90250 -10.84201 -10.54241 -10.14949 -10.00829 -9.72483 -9.53889 -9.30144 -9.26517 -8.77524 -8.54308 -8.21875 -7.55632 -6.24240 -4.26752 0.46177 0.77333 1.29975 2.14099 2.43172 2.65773 2.85221 3.15813 3.20676 3.23870 3.30995 3.44853 3.72846 3.80901 4.15401 4.22098 4.35582 4.48047 4.62360 4.70581 4.76162 4.78654 4.93139 5.03686 5.11102 5.18638 5.38916 5.42588 5.49651 5.63210 5.68687 5.95042 6.01720 6.09244 6.16148 6.37487 6.42218 6.49104 6.55602 6.63309 7.23520 7.30780 7.52987 7.79445 8.15539 8.32257 8.53278 8.85316 9.30563 10.88395 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.028102 B = 0.001796 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.128172 B =15585.553601 C =16156.089286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.495 4.495 2 S 1.250 4.750 3 O -0.842 6.842 4 C -0.406 4.406 5 C -0.080 4.080 6 C -0.085 4.085 7 C -0.120 4.120 8 C -0.083 4.083 9 C -0.123 4.123 10 C 0.566 3.434 11 O -0.513 6.513 12 N -0.625 5.625 13 C 0.260 3.740 14 C -0.282 4.282 15 C 0.052 3.948 16 N -0.318 5.318 17 C 0.232 3.768 18 C -0.535 4.535 19 H 0.086 0.914 20 C 0.076 3.924 21 N -0.887 5.887 22 Si 0.875 3.125 23 H -0.272 1.272 24 H -0.265 1.265 25 H -0.281 1.281 26 N -0.296 5.296 27 C -0.052 4.052 28 H 0.114 0.886 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.411 0.589 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.054 0.946 40 H 0.038 0.962 41 H 0.268 0.732 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.773 11.719 5.193 28.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 1.448 4.552 3 O -0.837 6.837 4 C -0.541 4.541 5 C -0.081 4.081 6 C -0.104 4.104 7 C -0.138 4.138 8 C -0.103 4.103 9 C -0.126 4.126 10 C 0.353 3.647 11 O -0.388 6.388 12 N -0.273 5.273 13 C 0.006 3.994 14 C -0.313 4.313 15 C -0.097 4.097 16 N -0.100 5.100 17 C 0.113 3.887 18 C -0.573 4.573 19 H 0.104 0.896 20 C -0.128 4.128 21 N -0.525 5.525 22 Si 0.701 3.299 23 H -0.197 1.197 24 H -0.189 1.189 25 H -0.206 1.206 26 N -0.127 5.127 27 C -0.072 4.072 28 H 0.133 0.867 29 H 0.125 0.875 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.149 0.851 33 H 0.142 0.858 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.248 0.752 37 H 0.180 0.820 38 H 0.187 0.813 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -24.223 11.810 5.799 27.566 hybrid contribution -0.663 0.842 -1.259 1.653 sum -24.886 12.652 4.540 28.285 Atomic orbital electron populations 1.27700 1.22027 1.08197 1.07293 1.71078 0.86116 0.99186 0.98824 1.93143 1.73371 1.36544 1.80673 1.26694 0.97593 1.11338 1.18456 1.18978 0.92957 0.95202 1.01013 1.21280 0.94674 0.97652 0.96802 1.21090 0.94014 0.98358 1.00289 1.21446 1.00232 0.92854 0.95735 1.19775 0.94354 0.94984 1.03532 1.18115 0.80888 0.86588 0.79120 1.90705 1.67760 1.38006 1.42330 1.42330 1.06612 1.19365 1.58949 1.19065 0.90807 0.89322 1.00180 1.21553 1.01102 0.95013 1.13659 1.22568 0.85912 0.99844 1.01421 1.48629 1.07673 1.11953 1.41722 1.20065 0.75957 0.92926 0.99783 1.21108 1.01291 1.42586 0.92335 0.89645 1.24836 0.96793 0.95050 0.96095 1.69873 1.15544 1.44632 1.22406 0.86885 0.80562 0.79335 0.83133 1.19714 1.18941 1.20595 1.77402 1.11377 1.01836 1.22066 1.21133 0.92572 0.97101 0.96400 0.86717 0.87524 0.90168 0.88491 0.85076 0.85826 0.84995 0.85074 0.75240 0.81954 0.81309 0.92844 0.94427 0.92173 0.83563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -1.76 10.74 101.05 1.09 -0.68 16 2 S 1.25 6.55 13.78 -107.50 -1.48 5.06 16 3 O -0.84 -10.14 18.14 -35.23 -0.64 -10.78 16 4 C -0.41 -2.10 6.05 36.00 0.22 -1.89 16 5 C -0.08 -0.66 5.13 -104.68 -0.54 -1.19 16 6 C -0.08 -0.75 9.69 -39.49 -0.38 -1.13 16 7 C -0.12 -1.02 10.03 -39.64 -0.40 -1.42 16 8 C -0.08 -0.78 9.54 -39.18 -0.37 -1.15 16 9 C -0.12 -1.34 5.87 -104.97 -0.62 -1.96 16 10 C 0.57 7.97 7.74 -12.34 -0.10 7.87 16 11 O -0.51 -8.30 13.47 5.30 0.07 -8.23 16 12 N -0.63 -9.53 5.40 -12.00 -0.06 -9.60 16 13 C 0.26 5.06 8.11 -154.45 -1.25 3.81 16 14 C -0.28 -5.29 9.60 -39.83 -0.38 -5.68 16 15 C 0.05 0.97 11.44 -17.24 -0.20 0.77 16 16 N -0.32 -7.07 3.67 -62.56 -0.23 -7.30 16 17 C 0.23 5.41 5.33 -5.20 -0.03 5.38 16 18 C -0.54 -14.95 9.79 -34.44 -0.34 -15.29 16 19 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 20 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 21 N -0.89 -26.41 13.96 55.43 0.77 -25.63 16 22 Si 0.87 19.96 27.47 -169.99 -4.67 15.29 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 N -0.30 -6.67 12.42 31.43 0.39 -6.28 16 27 C -0.05 -0.47 9.24 -39.18 -0.36 -0.84 16 28 H 0.11 0.12 8.14 -51.92 -0.42 -0.31 16 29 H 0.11 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.10 0.51 8.08 -51.92 -0.42 0.09 16 32 H 0.13 0.31 8.08 -51.92 -0.42 -0.11 16 33 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 35 H 0.13 1.01 6.40 -52.49 -0.34 0.68 16 36 H 0.41 5.19 6.86 -40.82 -0.28 4.91 16 37 H 0.16 2.89 5.91 -52.49 -0.31 2.58 16 38 H 0.17 2.47 8.06 -52.49 -0.42 2.05 16 39 H 0.05 1.14 7.12 -51.93 -0.37 0.77 16 40 H 0.04 0.86 7.57 -51.93 -0.39 0.47 16 41 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.15 1.10 7.65 -52.49 -0.40 0.70 16 LS Contribution 375.48 15.07 5.66 5.66 Total: -1.00 -39.00 375.48 -9.00 -48.01 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -5.06 Total: 5.17 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -3.76 Total: -11.38 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.87 Total: -48.80 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.57 Total: -19.01 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.67 Total: 15.29 kcal Atomic # 16 Polarization: 6.55 SS G_CDS: -1.48 Total: 5.06 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -39.00 -9.00 -48.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117855903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.781 kcal (2) G-P(sol) polarization free energy of solvation -39.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds