Wall clock time and date at job start Wed Apr 1 2020 04:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42099 * 109.47127 * 2 1 4 4 C 1.81399 * 103.00225 * 243.61048 * 2 1 3 5 5 C 1.50695 * 109.47249 * 180.02562 * 4 2 1 6 6 C 1.38391 * 119.92589 * 269.97448 * 5 4 2 7 7 C 1.38340 * 120.29363 * 179.97438 * 6 5 4 8 8 C 1.37980 * 120.14782 * 359.75288 * 7 6 5 9 9 C 1.39566 * 119.84893 * 0.52520 * 8 7 6 10 10 C 1.47811 * 120.14730 * 179.74900 * 9 8 7 11 11 O 1.21570 * 120.00458 * 179.72483 * 10 9 8 12 12 N 1.34780 * 119.99885 * 359.72207 * 10 9 8 13 13 C 1.40078 * 120.00260 * 180.02562 * 12 10 9 14 14 C 1.40428 * 125.97544 * 359.97097 * 13 12 10 15 15 C 1.35236 * 107.86894 * 179.77547 * 14 13 12 16 16 N 1.34972 * 107.86406 * 0.36756 * 15 14 13 17 17 C 1.46495 * 125.97661 * 179.89664 * 16 15 14 18 18 C 1.50702 * 109.47571 * 124.71645 * 17 16 15 19 19 H 1.08002 * 119.99446 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00072 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 179.72119 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72576 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72423 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72459 * 22 20 18 26 26 N 1.31231 * 125.98044 * 179.97438 * 13 12 10 27 27 C 1.37933 * 119.92846 * 90.00212 * 5 4 2 28 28 H 1.09001 * 109.47072 * 176.38974 * 1 2 3 29 29 H 1.09005 * 109.47319 * 296.39153 * 1 2 3 30 30 H 1.08999 * 109.46943 * 56.38854 * 1 2 3 31 31 H 1.09001 * 109.46959 * 60.00198 * 4 2 1 32 32 H 1.08999 * 109.47056 * 300.00100 * 4 2 1 33 33 H 1.08000 * 119.85033 * 0.03329 * 6 5 4 34 34 H 1.07999 * 119.92519 * 180.02562 * 7 6 5 35 35 H 1.07997 * 120.07536 * 180.27257 * 8 7 6 36 36 H 0.97004 * 119.99593 * 359.97438 * 12 10 9 37 37 H 1.07995 * 126.06473 * 0.04057 * 14 13 12 38 38 H 1.08000 * 126.07141 * 180.26280 * 15 14 13 39 39 H 1.09000 * 109.47378 * 4.71304 * 17 16 15 40 40 H 1.09001 * 109.47153 * 244.71425 * 17 16 15 41 41 H 0.96999 * 120.00128 * 180.27192 * 21 20 18 42 42 H 1.07993 * 120.07081 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2221 -0.7856 -1.5833 5 6 3.7194 -0.8616 -1.7351 6 6 4.4059 0.1777 -2.3382 7 6 5.7805 0.1161 -2.4810 8 6 6.4769 -0.9813 -2.0179 9 6 5.7901 -2.0356 -1.4140 10 6 6.5288 -3.2169 -0.9205 11 8 5.9285 -4.1316 -0.3904 12 7 7.8681 -3.2801 -1.0582 13 6 8.5682 -4.3998 -0.5910 14 6 8.0046 -5.5220 0.0376 15 6 9.0074 -6.3805 0.3311 16 7 10.1642 -5.8242 -0.0860 17 6 11.4981 -6.4167 0.0383 18 6 12.1479 -6.4813 -1.3199 19 1 11.6197 -6.1176 -2.1889 20 6 13.4160 -7.0055 -1.4532 21 7 13.9808 -7.0668 -2.6393 22 14 14.3293 -7.6351 0.0497 23 1 15.1238 -6.5306 0.6448 24 1 13.3518 -8.1359 1.0491 25 1 15.2383 -8.7393 -0.3498 26 7 9.8655 -4.5837 -0.6641 27 6 4.4027 -1.9673 -1.2733 28 1 -0.3633 -1.0256 -0.0647 29 1 -0.3634 0.4568 0.9206 30 1 -0.3633 0.5689 -0.8559 31 1 1.8032 -0.1970 -2.3995 32 1 1.8032 -1.7916 -1.6084 33 1 3.8661 1.0412 -2.6980 34 1 6.3103 0.9308 -2.9522 35 1 7.5505 -1.0263 -2.1260 36 1 8.3470 -2.5505 -1.4816 37 1 6.9558 -5.6744 0.2455 38 1 8.9016 -7.3403 0.8150 39 1 11.4119 -7.4231 0.4480 40 1 12.1071 -5.8046 0.7036 41 1 14.8715 -7.4393 -2.7338 42 1 3.8657 -2.7780 -0.8037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117855903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:58 Heat of formation + Delta-G solvation = 18.587404 kcal Electronic energy + Delta-G solvation = -26075.024290 eV Core-core repulsion = 22148.070203 eV Total energy + Delta-G solvation = -3926.954088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.27197 -41.11094 -39.51763 -36.79373 -36.29796 -35.25913 -34.05357 -33.03751 -32.11366 -30.96313 -29.82628 -29.04793 -27.94532 -25.73532 -24.24508 -22.95424 -22.64560 -21.70613 -20.76861 -19.09090 -18.91095 -18.34445 -18.00472 -17.24930 -17.03142 -16.58349 -16.39416 -16.28697 -16.07653 -16.00561 -15.49824 -15.25424 -14.98664 -14.83698 -14.69627 -14.40337 -14.16108 -13.85891 -13.81804 -13.60542 -13.51634 -13.33105 -13.00090 -12.75569 -12.65471 -12.56929 -12.18152 -12.15193 -11.80905 -11.64521 -11.45658 -11.43764 -10.95914 -10.86250 -10.07003 -9.87744 -9.74961 -9.10121 -9.04665 -8.36100 -6.46465 -0.31563 0.13864 0.78003 1.07074 1.31221 1.40166 1.41665 1.50884 1.60295 1.77327 2.23738 2.30306 2.33733 2.80679 2.89722 2.96695 3.44879 3.58618 3.83924 3.95972 4.06933 4.17918 4.23679 4.26518 4.32158 4.50681 4.54428 4.60044 4.62248 4.78466 4.87468 4.90221 4.93522 5.01618 5.12593 5.18301 5.26170 5.30005 5.32651 5.42222 5.81864 5.88623 6.02597 6.20672 6.43127 6.59648 6.95823 7.05852 7.16595 8.80876 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.028102 B = 0.001796 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.128172 B =15585.553601 C =16156.089286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.487 4.487 2 S 1.277 4.723 3 O -0.916 6.916 4 C -0.403 4.403 5 C -0.082 4.082 6 C -0.095 4.095 7 C -0.124 4.124 8 C -0.088 4.088 9 C -0.140 4.140 10 C 0.569 3.431 11 O -0.535 6.535 12 N -0.624 5.624 13 C 0.264 3.736 14 C -0.291 4.291 15 C 0.062 3.938 16 N -0.344 5.344 17 C 0.239 3.761 18 C -0.547 4.547 19 H 0.026 0.974 20 C 0.013 3.987 21 N -0.943 5.943 22 Si 0.956 3.044 23 H -0.267 1.267 24 H -0.228 1.228 25 H -0.279 1.279 26 N -0.349 5.349 27 C -0.051 4.051 28 H 0.149 0.851 29 H 0.109 0.891 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.167 0.833 33 H 0.129 0.871 34 H 0.151 0.849 35 H 0.141 0.859 36 H 0.420 0.580 37 H 0.174 0.826 38 H 0.213 0.787 39 H 0.085 0.915 40 H 0.044 0.956 41 H 0.272 0.728 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.729 10.771 7.162 30.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.646 4.646 2 S 1.479 4.521 3 O -0.912 6.912 4 C -0.538 4.538 5 C -0.083 4.083 6 C -0.114 4.114 7 C -0.141 4.141 8 C -0.107 4.107 9 C -0.144 4.144 10 C 0.358 3.642 11 O -0.411 6.411 12 N -0.273 5.273 13 C 0.009 3.991 14 C -0.322 4.322 15 C -0.086 4.086 16 N -0.126 5.126 17 C 0.119 3.881 18 C -0.585 4.585 19 H 0.044 0.956 20 C -0.185 4.185 21 N -0.581 5.581 22 Si 0.777 3.223 23 H -0.192 1.192 24 H -0.150 1.150 25 H -0.204 1.204 26 N -0.180 5.180 27 C -0.071 4.071 28 H 0.167 0.833 29 H 0.128 0.872 30 H 0.090 0.910 31 H 0.117 0.883 32 H 0.185 0.815 33 H 0.147 0.853 34 H 0.169 0.831 35 H 0.159 0.841 36 H 0.259 0.741 37 H 0.191 0.809 38 H 0.229 0.771 39 H 0.102 0.898 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -26.210 10.899 7.771 29.431 hybrid contribution -0.298 1.212 -2.012 2.367 sum -26.508 12.112 5.760 29.708 Atomic orbital electron populations 1.27629 1.19444 1.10389 1.07148 1.70273 0.86938 0.96685 0.98228 1.93034 1.76076 1.39725 1.82374 1.26712 0.95717 1.13336 1.18035 1.19233 0.94555 0.94420 1.00079 1.21573 0.95065 0.98089 0.96713 1.21332 0.94176 0.98580 1.00052 1.21595 1.00891 0.92727 0.95488 1.19642 0.95016 0.94317 1.05381 1.18622 0.80224 0.87156 0.78190 1.90667 1.67972 1.39095 1.43362 1.42494 1.07108 1.18711 1.59031 1.19455 0.90316 0.90433 0.98853 1.21802 1.01669 0.94924 1.13816 1.23289 0.84463 1.00964 0.99912 1.48518 1.08098 1.12489 1.43472 1.19904 0.76664 0.94624 0.96900 1.21243 1.01749 1.42471 0.93035 0.95596 1.25934 0.97619 0.94953 1.00023 1.70053 1.16292 1.46163 1.25639 0.85612 0.79337 0.78624 0.78754 1.19168 1.15033 1.20420 1.77317 1.13187 1.03090 1.24411 1.21339 0.91894 0.97804 0.96024 0.83311 0.87191 0.90972 0.88268 0.81543 0.85327 0.83134 0.84099 0.74133 0.80875 0.77086 0.89755 0.93769 0.91926 0.81964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -2.18 10.74 113.37 1.22 -0.96 16 2 S 1.28 11.53 13.78 -56.49 -0.78 10.75 16 3 O -0.92 -22.18 18.14 -148.98 -2.70 -24.88 16 4 C -0.40 -3.18 6.05 71.23 0.43 -2.75 16 5 C -0.08 -1.20 5.13 -19.90 -0.10 -1.31 16 6 C -0.10 -1.59 9.69 22.33 0.22 -1.38 16 7 C -0.12 -2.02 10.03 22.23 0.22 -1.79 16 8 C -0.09 -1.60 9.54 22.53 0.21 -1.39 16 9 C -0.14 -2.97 5.87 -20.09 -0.12 -3.09 16 10 C 0.57 15.84 7.74 86.78 0.67 16.51 16 11 O -0.53 -16.89 13.47 -3.94 -0.05 -16.94 16 12 N -0.62 -19.25 5.40 -310.14 -1.67 -20.93 16 13 C 0.26 10.38 8.11 133.35 1.08 11.46 16 14 C -0.29 -10.68 9.60 22.11 0.21 -10.47 16 15 C 0.06 2.20 11.44 83.52 0.96 3.16 16 16 N -0.34 -15.19 3.67 -351.85 -1.29 -16.48 16 17 C 0.24 10.91 5.33 85.63 0.46 11.37 16 18 C -0.55 -31.42 9.79 25.60 0.25 -31.17 16 19 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 20 C 0.01 0.76 5.47 84.65 0.46 1.22 16 21 N -0.94 -58.00 13.96 21.45 0.30 -57.70 16 22 Si 0.96 40.40 27.47 68.60 1.88 42.29 16 23 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 24 H -0.23 -8.23 6.54 99.48 0.65 -7.58 16 25 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 26 N -0.35 -16.13 12.42 -54.48 -0.68 -16.81 16 27 C -0.05 -0.85 9.24 22.53 0.21 -0.64 16 28 H 0.15 -0.33 8.14 -2.39 -0.02 -0.35 16 29 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.10 0.82 8.08 -2.39 -0.02 0.80 16 32 H 0.17 0.13 8.08 -2.39 -0.02 0.11 16 33 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 34 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 35 H 0.14 2.16 6.40 -2.91 -0.02 2.15 16 36 H 0.42 10.92 6.86 -92.71 -0.64 10.28 16 37 H 0.17 5.95 5.91 -2.91 -0.02 5.93 16 38 H 0.21 5.42 8.06 -2.91 -0.02 5.40 16 39 H 0.08 3.32 7.12 -2.39 -0.02 3.30 16 40 H 0.04 1.95 7.57 -2.39 -0.02 1.93 16 41 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 42 H 0.16 2.09 7.65 -2.91 -0.02 2.07 16 Total: -1.00 -89.81 375.48 1.76 -88.04 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 0.37 Total: 23.88 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 6.38 Total: -11.23 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -3.34 Total: -111.91 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -2.76 Total: -41.82 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 1.88 Total: 42.29 kcal Atomic # 16 Polarization: 11.53 SS G_CDS: -0.78 Total: 10.75 kcal Total: -89.81 1.76 -88.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117855903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.632 kcal (2) G-P(sol) polarization free energy of solvation -89.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds