Wall clock time and date at job start Wed Apr 1 2020 04:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 117.00014 * 2 1 4 4 O 1.20821 * 120.00394 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99697 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47012 * 180.02562 * 5 3 2 7 7 C 1.36980 * 120.00098 * 267.18712 * 6 5 3 8 8 H 1.07997 * 119.99969 * 33.33115 * 7 6 5 9 9 C 1.38983 * 119.99539 * 213.33329 * 7 6 5 10 10 N 1.31410 * 120.00161 * 19.01027 * 9 7 6 11 11 Si 1.86799 * 119.99555 * 199.01427 * 9 7 6 12 12 H 1.48505 * 109.47190 * 90.00112 * 11 9 7 13 13 H 1.48504 * 109.47139 * 209.99866 * 11 9 7 14 14 H 1.48502 * 109.47524 * 330.00181 * 11 9 7 15 15 C 1.34774 * 119.99954 * 87.17963 * 6 5 3 16 16 O 1.21630 * 120.00396 * 184.87338 * 15 6 5 17 17 C 1.47335 * 120.00154 * 4.88426 * 15 6 5 18 18 C 1.41362 * 126.41502 * 340.77145 * 17 15 6 19 19 N 1.30472 * 108.06737 * 179.78230 * 18 17 15 20 20 N 1.39935 * 108.93327 * 0.38190 * 19 18 17 21 21 C 1.40214 * 125.76654 * 179.87957 * 20 19 18 22 22 C 1.38805 * 120.07873 * 179.41492 * 21 20 19 23 23 C 1.38124 * 119.95986 * 180.22360 * 22 21 20 24 24 C 1.38296 * 120.11273 * 0.07057 * 23 22 21 25 25 C 1.38247 * 120.15468 * 359.95408 * 24 23 22 26 26 C 1.38334 * 120.04581 * 359.97438 * 25 24 23 27 27 F 1.35095 * 120.06349 * 180.02562 * 26 25 24 28 28 C 1.34537 * 108.46806 * 359.60973 * 20 19 18 29 29 H 1.08995 * 109.47450 * 59.98869 * 1 2 3 30 30 H 1.08988 * 109.47466 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46576 * 299.99933 * 1 2 3 32 32 H 1.09002 * 109.47154 * 60.00615 * 5 3 2 33 33 H 1.08994 * 109.47144 * 300.00445 * 5 3 2 34 34 H 0.97000 * 119.99591 * 184.94865 * 10 9 7 35 35 H 1.08005 * 125.96179 * 0.04059 * 18 17 15 36 36 H 1.08004 * 120.01645 * 0.29603 * 22 21 20 37 37 H 1.07997 * 119.94805 * 180.02562 * 23 22 21 38 38 H 1.08002 * 119.92337 * 179.97438 * 24 23 22 39 39 H 1.08006 * 119.97491 * 180.02562 * 25 24 23 40 40 H 1.07994 * 126.31876 * 180.22541 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4035 2.2094 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 0.0002 7 6 4.2314 3.3207 -1.1844 8 1 3.6638 3.0649 -2.0669 9 6 5.2150 4.3004 -1.2505 10 7 6.1446 4.3617 -0.3237 11 14 5.2154 5.5300 -2.6567 12 1 4.4083 6.7172 -2.2764 13 1 6.6098 5.9514 -2.9454 14 1 4.6283 4.8992 -3.8661 15 6 4.1183 3.3414 1.1663 16 8 4.3765 4.5300 1.1646 17 6 3.9551 2.6250 2.4434 18 6 3.3016 1.3859 2.6329 19 7 3.3708 1.0815 3.8997 20 7 4.0537 2.0995 4.5746 21 6 4.3249 2.1323 5.9499 22 6 5.0252 3.1993 6.4956 23 6 5.2950 3.2269 7.8499 24 6 4.8700 2.1924 8.6633 25 6 4.1726 1.1271 8.1246 26 6 3.8975 1.0936 6.7694 27 9 3.2157 0.0530 6.2427 28 6 4.4113 3.0385 3.6800 29 1 -0.3634 0.5140 -0.8898 30 1 -0.3634 -1.0275 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 3.9557 0.7809 -0.8909 33 1 3.9564 0.7804 0.8891 34 1 6.7880 5.0876 -0.3295 35 1 2.8312 0.7926 1.8626 36 1 5.3578 4.0081 5.8617 37 1 5.8395 4.0574 8.2744 38 1 5.0830 2.2168 9.7218 39 1 3.8417 0.3209 8.7626 40 1 4.9548 3.9479 3.8898 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120717546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:26 Heat of formation + Delta-G solvation = 3.518346 kcal Electronic energy + Delta-G solvation = -30525.141799 eV Core-core repulsion = 26031.321092 eV Total energy + Delta-G solvation = -4493.820707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.81656 -41.41754 -40.09152 -39.02699 -37.89170 -35.97723 -34.17518 -33.67263 -31.98870 -30.95891 -29.92514 -29.11948 -28.57901 -26.48053 -25.12885 -23.64012 -23.20159 -21.52100 -20.94645 -20.70427 -19.23129 -18.35991 -17.32495 -17.24967 -16.71930 -16.60380 -16.16938 -15.91599 -15.83837 -15.40038 -15.07467 -14.81996 -14.72682 -14.30790 -14.10181 -13.78394 -13.43643 -13.31934 -13.02774 -12.72206 -12.51426 -12.39524 -12.25477 -12.22009 -11.76348 -11.49173 -11.44804 -11.09858 -10.89280 -10.70557 -10.62125 -10.46494 -10.32798 -10.13786 -10.05008 -9.17378 -9.03958 -8.79875 -8.22659 -7.91887 -7.21145 -6.11720 -3.85631 0.58005 0.86960 2.15321 2.34448 2.60485 2.73552 3.06022 3.35001 3.37905 3.41277 3.44023 3.92615 4.20506 4.34287 4.51927 4.68494 4.79536 4.92425 4.94623 4.99196 5.12113 5.18829 5.30658 5.32614 5.36563 5.42768 5.52544 5.65542 5.73434 5.74421 5.81140 5.84620 5.92795 6.05836 6.06838 6.13634 6.41772 6.70834 6.72925 7.17209 7.54984 7.73585 8.11674 8.25890 8.93074 9.08683 9.55255 10.21690 10.93314 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011410 B = 0.003807 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.449942 B = 7353.469955 C = 9490.868418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.369 6.369 3 C 0.424 3.576 4 O -0.480 6.480 5 C 0.098 3.902 6 N -0.428 5.428 7 C -0.336 4.336 8 H 0.084 0.916 9 C 0.061 3.939 10 N -0.813 5.813 11 Si 0.914 3.086 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.539 3.461 16 O -0.513 6.513 17 C -0.225 4.225 18 C 0.054 3.946 19 N -0.284 5.284 20 N -0.325 5.325 21 C 0.137 3.863 22 C -0.117 4.117 23 C -0.102 4.102 24 C -0.108 4.108 25 C -0.135 4.135 26 C 0.097 3.903 27 F -0.115 7.115 28 C 0.093 3.907 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.265 0.735 35 H 0.195 0.805 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.662 -8.150 14.297 16.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.286 6.286 3 C 0.264 3.736 4 O -0.364 6.364 5 C -0.029 4.029 6 N -0.148 5.148 7 C -0.462 4.462 8 H 0.102 0.898 9 C -0.150 4.150 10 N -0.447 5.447 11 Si 0.741 3.259 12 H -0.204 1.204 13 H -0.213 1.213 14 H -0.198 1.198 15 C 0.327 3.673 16 O -0.389 6.389 17 C -0.239 4.239 18 C -0.133 4.133 19 N -0.102 5.102 20 N -0.100 5.100 21 C 0.043 3.957 22 C -0.138 4.138 23 C -0.121 4.121 24 C -0.127 4.127 25 C -0.154 4.154 26 C 0.075 3.925 27 F -0.094 7.094 28 C -0.050 4.050 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.075 0.925 35 H 0.211 0.789 36 H 0.161 0.839 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.160 0.840 40 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -2.877 -8.015 15.197 17.420 hybrid contribution -0.235 0.998 -1.414 1.747 sum -3.112 -7.017 13.783 15.777 Atomic orbital electron populations 1.23160 0.77420 1.03012 1.02334 1.86551 1.22774 1.34450 1.84871 1.25361 0.93737 0.81366 0.73159 1.90690 1.66603 1.36159 1.42906 1.21613 0.85535 0.89699 1.06070 1.42813 1.60248 1.05603 1.06166 1.19109 1.17430 1.22181 0.87486 0.89805 1.25024 0.93303 0.99059 0.97637 1.69958 1.12253 1.29206 1.33331 0.86164 0.77036 0.81636 0.81068 1.20432 1.21293 1.19837 1.16547 0.83595 0.86226 0.80965 1.90611 1.48107 1.14481 1.85685 1.21071 1.08798 0.97837 0.96165 1.24931 0.98573 0.95978 0.93843 1.77366 1.16463 1.09847 1.06494 1.45483 1.43236 1.16834 1.04436 1.17711 1.01229 0.96628 0.80173 1.20893 0.99228 0.97217 0.96445 1.21029 0.99699 0.99182 0.92185 1.21049 0.97846 0.93260 1.00510 1.21098 1.01135 1.00790 0.92399 1.17317 0.97875 0.85868 0.91440 1.91593 1.76547 1.54495 1.86736 1.22859 0.99247 0.94973 0.87933 0.92184 0.88571 0.92254 0.86545 0.87112 0.92455 0.78873 0.83897 0.84311 0.84563 0.83999 0.79524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -5.82 10.44 -39.26 -0.41 -6.23 16 3 C 0.42 8.16 5.76 36.01 0.21 8.37 16 4 O -0.48 -11.00 16.14 -18.75 -0.30 -11.30 16 5 C 0.10 1.93 5.49 -5.19 -0.03 1.91 16 6 N -0.43 -10.83 2.09 -117.34 -0.24 -11.08 16 7 C -0.34 -9.21 9.37 -14.98 -0.14 -9.35 16 8 H 0.08 2.22 7.90 -52.49 -0.41 1.81 16 9 C 0.06 1.69 4.40 -17.46 -0.08 1.61 16 10 N -0.81 -23.56 10.88 55.50 0.60 -22.96 16 11 Si 0.91 21.82 29.60 -169.99 -5.03 16.79 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 15 C 0.54 14.21 6.79 -12.56 -0.09 14.12 16 16 O -0.51 -15.34 13.94 5.25 0.07 -15.27 16 17 C -0.22 -4.95 5.85 -105.04 -0.61 -5.57 16 18 C 0.05 1.06 9.47 -16.94 -0.16 0.90 16 19 N -0.28 -5.45 10.70 30.88 0.33 -5.12 16 20 N -0.32 -5.81 3.77 -10.14 -0.04 -5.84 16 21 C 0.14 2.00 6.69 -83.51 -0.56 1.45 16 22 C -0.12 -1.33 9.44 -39.41 -0.37 -1.70 16 23 C -0.10 -0.86 10.04 -39.60 -0.40 -1.26 16 24 C -0.11 -0.84 10.04 -39.56 -0.40 -1.24 16 25 C -0.13 -1.31 10.02 -39.54 -0.40 -1.70 16 26 C 0.10 1.32 7.29 -39.25 -0.29 1.03 16 27 F -0.12 -1.82 15.52 2.25 0.03 -1.78 16 28 C 0.09 1.79 10.66 -16.40 -0.17 1.61 16 29 H 0.06 0.76 8.13 -51.93 -0.42 0.33 16 30 H 0.10 0.87 8.14 -51.94 -0.42 0.44 16 31 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 32 H 0.12 2.03 8.02 -51.93 -0.42 1.62 16 33 H 0.11 1.98 4.59 -51.93 -0.24 1.74 16 34 H 0.27 7.38 8.32 -40.82 -0.34 7.04 16 35 H 0.20 3.49 3.54 -52.48 -0.19 3.30 16 36 H 0.14 1.47 6.72 -52.48 -0.35 1.12 16 37 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 39 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 40 H 0.19 3.17 7.01 -52.49 -0.37 2.80 16 LS Contribution 350.93 15.07 5.29 5.29 Total: -1.00 -36.92 350.93 -5.76 -42.68 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -3.65 Total: 3.13 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -2.41 Total: 11.70 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.65 Total: -45.00 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.64 Total: -32.80 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.03 Total: -1.78 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.92 -5.76 -42.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120717546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.198 kcal (2) G-P(sol) polarization free energy of solvation -36.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds