Wall clock time and date at job start Wed Apr 1 2020 04:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 117.00014 * 2 1 4 4 O 1.20821 * 120.00394 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99697 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47012 * 180.02562 * 5 3 2 7 7 C 1.36980 * 120.00098 * 267.18712 * 6 5 3 8 8 H 1.07997 * 119.99969 * 33.33115 * 7 6 5 9 9 C 1.38983 * 119.99539 * 213.33329 * 7 6 5 10 10 N 1.31410 * 120.00161 * 19.01027 * 9 7 6 11 11 Si 1.86799 * 119.99555 * 199.01427 * 9 7 6 12 12 H 1.48505 * 109.47190 * 90.00112 * 11 9 7 13 13 H 1.48504 * 109.47139 * 209.99866 * 11 9 7 14 14 H 1.48502 * 109.47524 * 330.00181 * 11 9 7 15 15 C 1.34774 * 119.99954 * 87.17963 * 6 5 3 16 16 O 1.21630 * 120.00396 * 184.87338 * 15 6 5 17 17 C 1.47335 * 120.00154 * 4.88426 * 15 6 5 18 18 C 1.41362 * 126.41502 * 340.77145 * 17 15 6 19 19 N 1.30472 * 108.06737 * 179.78230 * 18 17 15 20 20 N 1.39935 * 108.93327 * 0.38190 * 19 18 17 21 21 C 1.40214 * 125.76654 * 179.87957 * 20 19 18 22 22 C 1.38805 * 120.07873 * 179.41492 * 21 20 19 23 23 C 1.38124 * 119.95986 * 180.22360 * 22 21 20 24 24 C 1.38296 * 120.11273 * 0.07057 * 23 22 21 25 25 C 1.38247 * 120.15468 * 359.95408 * 24 23 22 26 26 C 1.38334 * 120.04581 * 359.97438 * 25 24 23 27 27 F 1.35095 * 120.06349 * 180.02562 * 26 25 24 28 28 C 1.34537 * 108.46806 * 359.60973 * 20 19 18 29 29 H 1.08995 * 109.47450 * 59.98869 * 1 2 3 30 30 H 1.08988 * 109.47466 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46576 * 299.99933 * 1 2 3 32 32 H 1.09002 * 109.47154 * 60.00615 * 5 3 2 33 33 H 1.08994 * 109.47144 * 300.00445 * 5 3 2 34 34 H 0.97000 * 119.99591 * 184.94865 * 10 9 7 35 35 H 1.08005 * 125.96179 * 0.04059 * 18 17 15 36 36 H 1.08004 * 120.01645 * 0.29603 * 22 21 20 37 37 H 1.07997 * 119.94805 * 180.02562 * 23 22 21 38 38 H 1.08002 * 119.92337 * 179.97438 * 24 23 22 39 39 H 1.08006 * 119.97491 * 180.02562 * 25 24 23 40 40 H 1.07994 * 126.31876 * 180.22541 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4035 2.2094 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 0.0002 7 6 4.2314 3.3207 -1.1844 8 1 3.6638 3.0649 -2.0669 9 6 5.2150 4.3004 -1.2505 10 7 6.1446 4.3617 -0.3237 11 14 5.2154 5.5300 -2.6567 12 1 4.4083 6.7172 -2.2764 13 1 6.6098 5.9514 -2.9454 14 1 4.6283 4.8992 -3.8661 15 6 4.1183 3.3414 1.1663 16 8 4.3765 4.5300 1.1646 17 6 3.9551 2.6250 2.4434 18 6 3.3016 1.3859 2.6329 19 7 3.3708 1.0815 3.8997 20 7 4.0537 2.0995 4.5746 21 6 4.3249 2.1323 5.9499 22 6 5.0252 3.1993 6.4956 23 6 5.2950 3.2269 7.8499 24 6 4.8700 2.1924 8.6633 25 6 4.1726 1.1271 8.1246 26 6 3.8975 1.0936 6.7694 27 9 3.2157 0.0530 6.2427 28 6 4.4113 3.0385 3.6800 29 1 -0.3634 0.5140 -0.8898 30 1 -0.3634 -1.0275 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 3.9557 0.7809 -0.8909 33 1 3.9564 0.7804 0.8891 34 1 6.7880 5.0876 -0.3295 35 1 2.8312 0.7926 1.8626 36 1 5.3578 4.0081 5.8617 37 1 5.8395 4.0574 8.2744 38 1 5.0830 2.2168 9.7218 39 1 3.8417 0.3209 8.7626 40 1 4.9548 3.9479 3.8898 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120717546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:25 Heat of formation + Delta-G solvation = -20.057072 kcal Electronic energy + Delta-G solvation = -30526.164106 eV Core-core repulsion = 26031.321092 eV Total energy + Delta-G solvation = -4494.843014 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.88981 -42.87663 -41.58629 -40.10382 -39.55620 -37.50288 -36.06237 -34.99130 -33.86777 -31.91056 -31.30465 -30.50003 -29.95826 -27.86303 -26.86692 -24.99115 -24.24665 -23.00943 -22.21194 -22.15881 -20.89976 -19.73058 -18.76741 -18.58011 -18.22660 -17.93265 -17.52878 -17.23977 -17.05889 -16.97289 -16.33014 -16.22484 -16.05155 -15.78437 -15.55397 -15.10148 -15.00481 -14.51551 -14.36466 -14.22326 -14.01196 -13.86761 -13.47743 -13.36944 -12.96954 -12.95739 -12.84230 -12.73618 -12.62931 -12.43135 -12.08488 -12.03766 -11.78177 -11.73259 -11.51102 -11.01985 -10.30479 -10.17596 -9.96643 -9.26932 -9.18020 -8.18395 -5.95701 -0.46122 0.06274 0.86074 0.98199 1.07988 1.21417 1.41508 1.50372 1.53922 1.66253 2.34416 2.53395 2.76349 2.98579 3.09550 3.28471 3.31643 3.57604 3.70957 3.81408 3.93061 4.05460 4.10034 4.17008 4.23958 4.33316 4.34215 4.35092 4.48567 4.50973 4.56467 4.71244 4.89265 4.94003 5.14384 5.22024 5.30664 5.31946 5.45077 5.59633 5.94133 6.10363 6.27476 6.73877 6.91878 7.10904 7.55201 8.25606 8.86849 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011410 B = 0.003807 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.449942 B = 7353.469955 C = 9490.868418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.438 3.562 4 O -0.522 6.522 5 C 0.094 3.906 6 N -0.442 5.442 7 C -0.356 4.356 8 H 0.086 0.914 9 C 0.014 3.986 10 N -0.845 5.845 11 Si 0.972 3.028 12 H -0.294 1.294 13 H -0.277 1.277 14 H -0.255 1.255 15 C 0.532 3.468 16 O -0.565 6.565 17 C -0.266 4.266 18 C 0.056 3.944 19 N -0.293 5.293 20 N -0.313 5.313 21 C 0.085 3.915 22 C -0.120 4.120 23 C -0.092 4.092 24 C -0.083 4.083 25 C -0.130 4.130 26 C 0.071 3.929 27 F -0.136 7.136 28 C 0.108 3.892 29 H 0.059 0.941 30 H 0.141 0.859 31 H 0.054 0.946 32 H 0.138 0.862 33 H 0.130 0.870 34 H 0.261 0.739 35 H 0.204 0.796 36 H 0.147 0.853 37 H 0.177 0.823 38 H 0.182 0.818 39 H 0.168 0.832 40 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.527 -9.163 16.995 19.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C 0.279 3.721 4 O -0.410 6.410 5 C -0.032 4.032 6 N -0.162 5.162 7 C -0.483 4.483 8 H 0.103 0.897 9 C -0.193 4.193 10 N -0.480 5.480 11 Si 0.797 3.203 12 H -0.221 1.221 13 H -0.203 1.203 14 H -0.179 1.179 15 C 0.322 3.678 16 O -0.445 6.445 17 C -0.280 4.280 18 C -0.130 4.130 19 N -0.112 5.112 20 N -0.087 5.087 21 C -0.007 4.007 22 C -0.140 4.140 23 C -0.110 4.110 24 C -0.101 4.101 25 C -0.149 4.149 26 C 0.050 3.950 27 F -0.115 7.115 28 C -0.038 4.038 29 H 0.078 0.922 30 H 0.159 0.841 31 H 0.073 0.927 32 H 0.156 0.844 33 H 0.147 0.853 34 H 0.071 0.929 35 H 0.220 0.780 36 H 0.165 0.835 37 H 0.194 0.806 38 H 0.200 0.800 39 H 0.186 0.814 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -2.755 -9.125 17.917 20.295 hybrid contribution -0.321 1.219 -1.911 2.289 sum -3.077 -7.906 16.006 18.116 Atomic orbital electron populations 1.23556 0.75080 1.05862 1.02159 1.86524 1.24862 1.32063 1.83963 1.24996 0.93382 0.81650 0.72049 1.90679 1.67380 1.37754 1.45173 1.21797 0.86238 0.87132 1.08011 1.42924 1.60203 1.07619 1.05480 1.19371 1.17336 1.23251 0.88325 0.89670 1.25854 0.93067 1.00560 0.99843 1.70049 1.13017 1.29614 1.35343 0.85275 0.77191 0.78792 0.79054 1.22090 1.20266 1.17861 1.17132 0.82194 0.86039 0.82430 1.90545 1.50559 1.16606 1.86830 1.20763 1.12344 0.99544 0.95371 1.24897 0.98579 0.95260 0.94271 1.77304 1.17009 1.10660 1.06199 1.45650 1.41724 1.15634 1.05717 1.18255 1.04734 0.99084 0.78618 1.21194 0.98460 0.96276 0.98100 1.21538 0.98523 1.00281 0.90667 1.21645 0.94648 0.91305 1.02518 1.21499 1.00508 1.02169 0.90734 1.17821 0.98760 0.85432 0.93005 1.91532 1.77242 1.55417 1.87298 1.23032 0.98039 0.95248 0.87510 0.92249 0.84146 0.92678 0.84396 0.85315 0.92916 0.77973 0.83515 0.80582 0.80049 0.81428 0.78034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.56 113.37 1.20 1.83 16 2 O -0.36 -10.92 10.44 -51.44 -0.54 -11.45 16 3 C 0.44 17.01 5.76 71.24 0.41 17.42 16 4 O -0.52 -24.64 16.14 21.98 0.35 -24.28 16 5 C 0.09 3.78 5.49 85.63 0.47 4.25 16 6 N -0.44 -23.26 2.09 -643.40 -1.34 -24.60 16 7 C -0.36 -20.17 9.37 84.07 0.79 -19.38 16 8 H 0.09 4.64 7.90 -2.91 -0.02 4.61 16 9 C 0.01 0.82 4.40 84.93 0.37 1.19 16 10 N -0.84 -50.94 10.88 21.67 0.24 -50.70 16 11 Si 0.97 46.00 29.60 68.60 2.03 48.03 16 12 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 13 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 14 H -0.25 -11.13 7.11 99.48 0.71 -10.43 16 15 C 0.53 29.45 6.79 86.64 0.59 30.04 16 16 O -0.57 -35.66 13.94 -4.13 -0.06 -35.72 16 17 C -0.27 -12.21 5.85 -20.14 -0.12 -12.32 16 18 C 0.06 2.27 9.47 85.66 0.81 3.08 16 19 N -0.29 -11.47 10.70 -56.21 -0.60 -12.07 16 20 N -0.31 -11.35 3.77 -185.98 -0.70 -12.05 16 21 C 0.09 2.44 6.69 38.13 0.26 2.70 16 22 C -0.12 -2.48 9.44 22.38 0.21 -2.27 16 23 C -0.09 -1.13 10.04 22.26 0.22 -0.91 16 24 C -0.08 -0.85 10.04 22.29 0.22 -0.63 16 25 C -0.13 -2.07 10.02 22.29 0.22 -1.85 16 26 C 0.07 1.85 7.29 22.49 0.16 2.01 16 27 F -0.14 -4.28 15.52 44.97 0.70 -3.59 16 28 C 0.11 4.27 10.66 84.26 0.90 5.17 16 29 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 30 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.05 1.37 8.13 -2.39 -0.02 1.35 16 32 H 0.14 4.83 8.02 -2.39 -0.02 4.81 16 33 H 0.13 4.69 4.59 -2.39 -0.01 4.68 16 34 H 0.26 15.16 8.32 -92.71 -0.77 14.39 16 35 H 0.20 7.44 3.54 -2.91 -0.01 7.43 16 36 H 0.15 2.84 6.72 -2.91 -0.02 2.82 16 37 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 38 H 0.18 0.36 8.06 -2.91 -0.02 0.34 16 39 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 40 H 0.20 7.09 7.01 -2.91 -0.02 7.07 16 Total: -1.00 -86.47 350.93 7.92 -78.56 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 1.12 Total: 17.55 kcal Atomic # 6 Polarization: 23.60 SS G_CDS: 6.72 Total: 30.32 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -2.41 Total: -99.42 kcal Atomic # 8 Polarization: -71.22 SS G_CDS: -0.24 Total: -71.46 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.70 Total: -3.59 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -86.47 7.92 -78.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120717546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.501 kcal (2) G-P(sol) polarization free energy of solvation -86.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds