Wall clock time and date at job start Wed Apr 1 2020 04:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47255 * 2 1 4 4 C 1.37102 * 120.00233 * 264.74666 * 3 2 1 5 5 H 1.08001 * 120.00225 * 146.16496 * 4 3 2 6 6 C 1.38954 * 119.99764 * 326.16530 * 4 3 2 7 7 N 1.31407 * 120.00011 * 337.68839 * 6 4 3 8 8 Si 1.86799 * 119.99655 * 157.68525 * 6 4 3 9 9 H 1.48501 * 109.47109 * 90.00066 * 8 6 4 10 10 H 1.48500 * 109.47263 * 210.00033 * 8 6 4 11 11 H 1.48504 * 109.47255 * 330.00298 * 8 6 4 12 12 C 1.34783 * 120.00064 * 84.74848 * 3 2 1 13 13 O 1.21289 * 120.00225 * 179.97438 * 12 3 2 14 14 C 1.50699 * 119.99492 * 359.97438 * 12 3 2 15 15 C 1.53008 * 109.46778 * 179.97438 * 14 12 3 16 16 N 1.46499 * 109.46798 * 180.02562 * 15 14 12 17 17 C 1.36570 * 119.77502 * 90.00591 * 16 15 14 18 18 S 1.76202 * 118.46770 * 0.03560 * 17 16 15 19 19 N 1.31022 * 123.06785 * 180.02562 * 17 16 15 20 20 C 1.34813 * 121.61126 * 359.97438 * 19 17 16 21 21 C 1.39822 * 121.62214 * 180.02562 * 20 19 17 22 22 C 1.36631 * 119.66242 * 179.97438 * 21 20 19 23 23 C 1.38902 * 120.97641 * 0.02562 * 22 21 20 24 24 C 1.36752 * 120.73024 * 359.97438 * 23 22 21 25 25 C 1.39417 * 119.51645 * 0.02562 * 24 23 22 26 26 C 1.35342 * 119.76959 * 270.01993 * 16 15 14 27 27 O 1.21724 * 121.25287 * 0.02562 * 26 16 15 28 28 H 1.08998 * 109.46986 * 300.00248 * 1 2 3 29 29 H 1.08997 * 109.47005 * 59.99870 * 1 2 3 30 30 H 1.08999 * 109.47066 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46983 * 240.00068 * 2 1 3 32 32 H 1.08997 * 109.47005 * 120.00130 * 2 1 3 33 33 H 0.97002 * 119.99804 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.47331 * 60.00279 * 14 12 3 35 35 H 1.08998 * 109.47536 * 299.99657 * 14 12 3 36 36 H 1.08994 * 109.47040 * 59.99909 * 15 14 12 37 37 H 1.08998 * 109.46900 * 300.00161 * 15 14 12 38 38 H 1.41001 * 100.00121 * 179.97438 * 18 17 16 39 39 H 1.07999 * 120.16731 * 359.97438 * 21 20 19 40 40 H 1.07995 * 119.50669 * 180.27771 * 22 21 20 41 41 H 1.08003 * 119.63324 * 179.97438 * 23 22 21 42 42 H 1.08003 * 120.24281 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3494 1.9913 -1.1823 5 1 2.1816 3.0506 -1.3089 6 6 2.9008 1.2466 -2.2178 7 7 3.5051 0.1087 -1.9594 8 14 2.7828 1.8631 -3.9772 9 1 3.9651 2.7067 -4.2865 10 1 2.7445 0.7050 -4.9060 11 1 1.5449 2.6676 -4.1379 12 6 2.1423 2.0522 1.1623 13 8 2.5471 3.1955 1.1624 14 6 1.7779 1.3817 2.4618 15 6 2.0097 2.3543 3.6200 16 7 1.6561 1.7023 4.8834 17 6 2.6052 1.0066 5.5764 18 16 4.2357 0.9223 4.9140 19 7 2.3599 0.3990 6.7111 20 6 1.1358 0.4231 7.2754 21 6 0.8740 -0.2248 8.4865 22 6 -0.3816 -0.1741 9.0228 23 6 -1.4054 0.5122 8.3823 24 6 -1.1805 1.1557 7.1968 25 6 0.0913 1.1204 6.6266 26 6 0.3909 1.7934 5.3555 27 8 -0.4665 2.4091 4.7494 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8897 -0.4113 -2.6823 34 1 2.3992 0.4970 2.6010 35 1 0.7284 1.0885 2.4377 36 1 1.3888 3.2392 3.4811 37 1 3.0594 2.6471 3.6440 38 1 4.8635 0.1424 5.9069 39 1 1.6603 -0.7625 8.9954 40 1 -0.5799 -0.6715 9.9606 41 1 -2.3900 0.5380 8.8255 42 1 -1.9822 1.6873 6.7057 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124160555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:22 Heat of formation + Delta-G solvation = -5.301508 kcal Electronic energy + Delta-G solvation = -27953.121986 eV Core-core repulsion = 24025.131997 eV Total energy + Delta-G solvation = -3927.989989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.71067 -39.03255 -38.42241 -37.58270 -35.26012 -34.66466 -32.18754 -31.73052 -30.55896 -30.19900 -29.45360 -26.00826 -25.27184 -24.54385 -22.92384 -22.20001 -22.08488 -19.77919 -19.03184 -18.86088 -17.84979 -16.87752 -16.69048 -16.23164 -15.94059 -15.34024 -15.20377 -15.12354 -14.78385 -14.43981 -14.26415 -14.19984 -14.07823 -13.60287 -13.24313 -13.00445 -12.83997 -12.48990 -12.31397 -12.06959 -11.95967 -11.71998 -11.67757 -11.34089 -11.07879 -10.95620 -10.93666 -10.37934 -10.33954 -10.32076 -10.18842 -10.14752 -10.06135 -9.42411 -9.12466 -8.94973 -8.46525 -7.91723 -7.51238 -6.34838 -3.95174 0.20040 0.62204 0.65405 1.90512 1.92171 2.39942 2.57865 3.16509 3.25908 3.31892 3.75599 3.86057 3.98320 4.07092 4.15068 4.53542 4.66698 4.79437 4.99294 5.00747 5.05727 5.14011 5.22762 5.29112 5.57676 5.66341 5.71505 5.80207 5.85826 5.94842 6.01311 6.05613 6.15541 6.24213 6.24835 6.36678 6.43904 6.53940 6.57453 6.88965 7.26106 7.42841 7.58006 7.58865 8.21833 8.48203 9.15897 9.39491 9.97576 10.68776 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.018590 B = 0.002855 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.843187 B = 9805.890424 C =10409.947672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.095 3.905 3 N -0.435 5.435 4 C -0.307 4.307 5 H 0.093 0.907 6 C 0.036 3.964 7 N -0.868 5.868 8 Si 0.916 3.084 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.464 3.536 13 O -0.583 6.583 14 C -0.149 4.149 15 C 0.107 3.893 16 N -0.523 5.523 17 C 0.402 3.598 18 S 0.006 5.994 19 N -0.548 5.548 20 C 0.174 3.826 21 C -0.118 4.118 22 C -0.071 4.071 23 C -0.147 4.147 24 C -0.035 4.035 25 C -0.203 4.203 26 C 0.552 3.448 27 O -0.497 6.497 28 H 0.041 0.959 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.115 0.885 32 H 0.047 0.953 33 H 0.268 0.732 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.125 0.875 39 H 0.136 0.864 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.032 -4.925 19.281 20.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.030 4.030 3 N -0.154 5.154 4 C -0.434 4.434 5 H 0.111 0.889 6 C -0.168 4.168 7 N -0.506 5.506 8 Si 0.743 3.257 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.194 1.194 12 C 0.251 3.749 13 O -0.468 6.468 14 C -0.191 4.191 15 C -0.014 4.014 16 N -0.246 5.246 17 C 0.027 3.973 18 S 0.164 5.836 19 N -0.276 5.276 20 C 0.060 3.940 21 C -0.138 4.138 22 C -0.091 4.091 23 C -0.167 4.167 24 C -0.055 4.055 25 C -0.210 4.210 26 C 0.344 3.656 27 O -0.370 6.370 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.132 0.868 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.089 0.911 39 H 0.154 0.846 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.967 -4.454 18.661 19.413 hybrid contribution -1.140 -0.182 -0.115 1.160 sum -4.106 -4.636 18.546 19.552 Atomic orbital electron populations 1.22213 0.98201 1.00367 1.01583 1.21616 0.91728 0.85456 1.04166 1.43489 1.55217 1.11843 1.04811 1.19456 1.39766 0.95518 0.88690 0.88922 1.25321 0.94501 0.96473 1.00506 1.69918 1.32497 1.15234 1.32934 0.86099 0.79095 0.78372 0.82146 1.20258 1.20827 1.19402 1.19836 0.82820 0.87902 0.84301 1.90530 1.50915 1.18571 1.86778 1.21941 1.03489 0.99503 0.94135 1.21937 1.03992 0.96767 0.78729 1.46639 1.09615 1.45470 1.22856 1.24310 0.94581 0.88555 0.89853 1.87943 0.97711 1.66790 1.31130 1.69059 1.22291 1.26543 1.09752 1.18631 0.87440 0.93760 0.94174 1.20571 0.97725 1.01215 0.94329 1.21008 0.92378 0.96441 0.99257 1.20901 0.99888 0.99837 0.96041 1.20788 0.94921 0.95494 0.94273 1.20568 0.96970 1.06327 0.97152 1.18364 0.81018 0.80812 0.85446 1.90897 1.44860 1.41322 1.59920 0.93951 0.92334 0.93101 0.86758 0.93443 0.92214 0.89234 0.89714 0.86945 0.87314 0.91071 0.84621 0.85093 0.85136 0.84477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 10.15 37.16 0.38 -2.68 16 2 C 0.09 2.03 5.43 -4.04 -0.02 2.01 16 3 N -0.44 -10.83 2.56 -114.81 -0.29 -11.12 16 4 C -0.31 -8.36 8.98 -14.93 -0.13 -8.49 16 5 H 0.09 2.65 7.70 -52.49 -0.40 2.25 16 6 C 0.04 0.93 4.92 -17.47 -0.09 0.85 16 7 N -0.87 -22.78 11.33 55.50 0.63 -22.15 16 8 Si 0.92 20.30 29.61 -169.99 -5.03 15.27 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 12 C 0.46 11.01 7.59 -10.98 -0.08 10.93 16 13 O -0.58 -15.58 15.81 5.55 0.09 -15.49 16 14 C -0.15 -2.76 4.63 -27.88 -0.13 -2.88 16 15 C 0.11 1.79 4.17 -4.04 -0.02 1.78 16 16 N -0.52 -7.98 2.62 -117.41 -0.31 -8.29 16 17 C 0.40 5.47 7.82 -88.53 -0.69 4.78 16 18 S 0.01 0.07 23.73 -107.50 -2.55 -2.48 16 19 N -0.55 -7.33 10.24 -10.90 -0.11 -7.44 16 20 C 0.17 2.27 6.62 -84.78 -0.56 1.71 16 21 C -0.12 -1.19 9.99 -39.57 -0.40 -1.58 16 22 C -0.07 -0.58 9.95 -39.92 -0.40 -0.98 16 23 C -0.15 -1.29 9.97 -39.87 -0.40 -1.69 16 24 C -0.04 -0.41 9.63 -39.68 -0.38 -0.79 16 25 C -0.20 -2.83 5.90 -104.76 -0.62 -3.45 16 26 C 0.55 8.93 7.66 -12.49 -0.10 8.84 16 27 O -0.50 -9.21 16.31 5.17 0.08 -9.12 16 28 H 0.04 0.76 6.59 -51.93 -0.34 0.42 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.11 2.71 5.34 -51.93 -0.28 2.43 16 32 H 0.05 0.93 6.66 -51.93 -0.35 0.58 16 33 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 34 H 0.09 1.53 7.34 -51.93 -0.38 1.15 16 35 H 0.08 1.55 6.53 -51.93 -0.34 1.21 16 36 H 0.11 2.05 7.42 -51.93 -0.39 1.67 16 37 H 0.11 1.75 6.43 -51.93 -0.33 1.42 16 38 H 0.13 1.08 9.50 96.90 0.92 2.00 16 39 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 42 H 0.14 1.51 7.82 -52.48 -0.41 1.10 16 LS Contribution 367.05 15.07 5.53 5.53 Total: -1.00 -31.93 367.05 -9.15 -41.07 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -3.55 Total: 5.89 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: -3.63 Total: 8.34 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -0.08 Total: -49.00 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: 0.17 Total: -24.61 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Atomic # 16 Polarization: 0.07 SS G_CDS: -2.55 Total: -2.48 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.93 -9.15 -41.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124160555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.771 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds