Wall clock time and date at job start Wed Apr 1 2020 04:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47255 * 2 1 4 4 C 1.37102 * 120.00233 * 264.74666 * 3 2 1 5 5 H 1.08001 * 120.00225 * 146.16496 * 4 3 2 6 6 C 1.38954 * 119.99764 * 326.16530 * 4 3 2 7 7 N 1.31407 * 120.00011 * 337.68839 * 6 4 3 8 8 Si 1.86799 * 119.99655 * 157.68525 * 6 4 3 9 9 H 1.48501 * 109.47109 * 90.00066 * 8 6 4 10 10 H 1.48500 * 109.47263 * 210.00033 * 8 6 4 11 11 H 1.48504 * 109.47255 * 330.00298 * 8 6 4 12 12 C 1.34783 * 120.00064 * 84.74848 * 3 2 1 13 13 O 1.21289 * 120.00225 * 179.97438 * 12 3 2 14 14 C 1.50699 * 119.99492 * 359.97438 * 12 3 2 15 15 C 1.53008 * 109.46778 * 179.97438 * 14 12 3 16 16 N 1.46499 * 109.46798 * 180.02562 * 15 14 12 17 17 C 1.36570 * 119.77502 * 90.00591 * 16 15 14 18 18 S 1.76202 * 118.46770 * 0.03560 * 17 16 15 19 19 N 1.31022 * 123.06785 * 180.02562 * 17 16 15 20 20 C 1.34813 * 121.61126 * 359.97438 * 19 17 16 21 21 C 1.39822 * 121.62214 * 180.02562 * 20 19 17 22 22 C 1.36631 * 119.66242 * 179.97438 * 21 20 19 23 23 C 1.38902 * 120.97641 * 0.02562 * 22 21 20 24 24 C 1.36752 * 120.73024 * 359.97438 * 23 22 21 25 25 C 1.39417 * 119.51645 * 0.02562 * 24 23 22 26 26 C 1.35342 * 119.76959 * 270.01993 * 16 15 14 27 27 O 1.21724 * 121.25287 * 0.02562 * 26 16 15 28 28 H 1.08998 * 109.46986 * 300.00248 * 1 2 3 29 29 H 1.08997 * 109.47005 * 59.99870 * 1 2 3 30 30 H 1.08999 * 109.47066 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46983 * 240.00068 * 2 1 3 32 32 H 1.08997 * 109.47005 * 120.00130 * 2 1 3 33 33 H 0.97002 * 119.99804 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.47331 * 60.00279 * 14 12 3 35 35 H 1.08998 * 109.47536 * 299.99657 * 14 12 3 36 36 H 1.08994 * 109.47040 * 59.99909 * 15 14 12 37 37 H 1.08998 * 109.46900 * 300.00161 * 15 14 12 38 38 H 1.41001 * 100.00121 * 179.97438 * 18 17 16 39 39 H 1.07999 * 120.16731 * 359.97438 * 21 20 19 40 40 H 1.07995 * 119.50669 * 180.27771 * 22 21 20 41 41 H 1.08003 * 119.63324 * 179.97438 * 23 22 21 42 42 H 1.08003 * 120.24281 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3494 1.9913 -1.1823 5 1 2.1816 3.0506 -1.3089 6 6 2.9008 1.2466 -2.2178 7 7 3.5051 0.1087 -1.9594 8 14 2.7828 1.8631 -3.9772 9 1 3.9651 2.7067 -4.2865 10 1 2.7445 0.7050 -4.9060 11 1 1.5449 2.6676 -4.1379 12 6 2.1423 2.0522 1.1623 13 8 2.5471 3.1955 1.1624 14 6 1.7779 1.3817 2.4618 15 6 2.0097 2.3543 3.6200 16 7 1.6561 1.7023 4.8834 17 6 2.6052 1.0066 5.5764 18 16 4.2357 0.9223 4.9140 19 7 2.3599 0.3990 6.7111 20 6 1.1358 0.4231 7.2754 21 6 0.8740 -0.2248 8.4865 22 6 -0.3816 -0.1741 9.0228 23 6 -1.4054 0.5122 8.3823 24 6 -1.1805 1.1557 7.1968 25 6 0.0913 1.1204 6.6266 26 6 0.3909 1.7934 5.3555 27 8 -0.4665 2.4091 4.7494 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8897 -0.4113 -2.6823 34 1 2.3992 0.4970 2.6010 35 1 0.7284 1.0885 2.4377 36 1 1.3888 3.2392 3.4811 37 1 3.0594 2.6471 3.6440 38 1 4.8635 0.1424 5.9069 39 1 1.6603 -0.7625 8.9954 40 1 -0.5799 -0.6715 9.9606 41 1 -2.3900 0.5380 8.8255 42 1 -1.9822 1.6873 6.7057 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124160555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:21 Heat of formation + Delta-G solvation = -23.945581 kcal Electronic energy + Delta-G solvation = -27953.930454 eV Core-core repulsion = 24025.131997 eV Total energy + Delta-G solvation = -3928.798456 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.79021 -40.57648 -39.68471 -38.70314 -37.02702 -35.93707 -34.07031 -32.78839 -31.81125 -31.20857 -31.14864 -27.61495 -26.25288 -26.02475 -24.30231 -23.71035 -23.09020 -20.71718 -20.67963 -20.02368 -19.07395 -18.64184 -17.87862 -17.46312 -17.40594 -16.89378 -16.45342 -16.19114 -16.02701 -15.96675 -15.77218 -15.26889 -14.97173 -14.76392 -14.70589 -14.57587 -14.39377 -13.98212 -13.61021 -13.40115 -13.19607 -13.03214 -12.84393 -12.80933 -12.67105 -12.56674 -12.27431 -12.15705 -12.08504 -11.80126 -11.46709 -11.25372 -11.21098 -10.89037 -10.40377 -10.29564 -10.05901 -9.47111 -8.83951 -8.33324 -6.01931 -0.73897 -0.29824 -0.27952 0.95418 1.02535 1.33514 1.38229 1.43946 1.56013 1.61269 2.00617 2.31147 2.85120 2.92024 3.01383 3.07379 3.17759 3.65747 3.73459 3.74233 3.96341 4.01505 4.20812 4.24704 4.30450 4.34064 4.44021 4.49921 4.62874 4.68089 4.82315 4.86174 4.93321 5.00099 5.09294 5.13034 5.27673 5.39651 5.46178 5.46900 5.56417 5.78079 6.20955 6.40151 6.42459 6.52075 7.17471 7.46295 8.04521 8.69003 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.018590 B = 0.002855 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.843187 B = 9805.890424 C =10409.947672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.094 3.906 3 N -0.448 5.448 4 C -0.342 4.342 5 H 0.065 0.935 6 C 0.007 3.993 7 N -0.883 5.883 8 Si 0.978 3.022 9 H -0.277 1.277 10 H -0.267 1.267 11 H -0.271 1.271 12 C 0.453 3.547 13 O -0.623 6.623 14 C -0.130 4.130 15 C 0.119 3.881 16 N -0.524 5.524 17 C 0.387 3.613 18 S -0.006 6.006 19 N -0.540 5.540 20 C 0.147 3.853 21 C -0.117 4.117 22 C -0.056 4.056 23 C -0.129 4.129 24 C -0.055 4.055 25 C -0.224 4.224 26 C 0.542 3.458 27 O -0.537 6.537 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.275 0.725 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.175 0.825 41 H 0.166 0.834 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.633 -7.294 21.603 23.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.029 4.029 3 N -0.166 5.166 4 C -0.470 4.470 5 H 0.083 0.917 6 C -0.196 4.196 7 N -0.520 5.520 8 Si 0.802 3.198 9 H -0.203 1.203 10 H -0.191 1.191 11 H -0.195 1.195 12 C 0.242 3.758 13 O -0.510 6.510 14 C -0.171 4.171 15 C -0.003 4.003 16 N -0.247 5.247 17 C 0.013 3.987 18 S 0.152 5.848 19 N -0.267 5.267 20 C 0.033 3.967 21 C -0.137 4.137 22 C -0.075 4.075 23 C -0.148 4.148 24 C -0.074 4.074 25 C -0.231 4.231 26 C 0.336 3.664 27 O -0.414 6.414 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.125 0.875 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.132 0.868 38 H 0.121 0.879 39 H 0.173 0.827 40 H 0.193 0.807 41 H 0.183 0.817 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.555 -6.881 21.022 22.404 hybrid contribution -0.956 0.464 -0.639 1.240 sum -4.511 -6.417 20.383 21.840 Atomic orbital electron populations 1.22110 0.95895 1.02361 1.00963 1.21703 0.93599 0.83634 1.04003 1.43751 1.55284 1.13006 1.04583 1.19384 1.41985 0.94935 0.90720 0.91711 1.26008 0.93493 0.96566 1.03556 1.69970 1.32088 1.15730 1.34229 0.85186 0.78723 0.78248 0.77689 1.20264 1.19111 1.19548 1.20606 0.81934 0.87555 0.85673 1.90489 1.52545 1.20361 1.87608 1.21737 1.03693 0.99799 0.91828 1.21605 1.03786 0.95662 0.79232 1.46478 1.09980 1.45887 1.22310 1.24530 0.94920 0.89071 0.90182 1.87973 0.96886 1.67490 1.32420 1.69071 1.22657 1.25729 1.09226 1.19007 0.87066 0.95066 0.95586 1.20937 0.99296 1.00432 0.93068 1.21523 0.91011 0.94840 1.00135 1.21354 1.01697 0.97458 0.94310 1.20958 0.94024 0.96717 0.95706 1.20638 0.98510 1.07382 0.96533 1.18876 0.80817 0.80552 0.86191 1.90855 1.45964 1.43334 1.61246 0.93713 0.93785 0.89719 0.88686 0.91628 0.91550 0.87517 0.89464 0.89175 0.86849 0.87897 0.82652 0.80741 0.81660 0.84917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.67 10.15 71.98 0.73 -4.94 16 2 C 0.09 4.06 5.43 86.38 0.47 4.53 16 3 N -0.45 -23.00 2.56 -635.53 -1.63 -24.63 16 4 C -0.34 -19.38 8.98 84.04 0.75 -18.62 16 5 H 0.07 3.94 7.70 -2.91 -0.02 3.92 16 6 C 0.01 0.35 4.92 84.93 0.42 0.77 16 7 N -0.88 -46.45 11.33 21.66 0.25 -46.20 16 8 Si 0.98 41.98 29.61 68.60 2.03 44.01 16 9 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 12 C 0.45 22.40 7.59 87.66 0.67 23.06 16 13 O -0.62 -35.08 15.81 -3.06 -0.05 -35.13 16 14 C -0.13 -4.91 4.63 29.85 0.14 -4.78 16 15 C 0.12 4.21 4.17 86.38 0.36 4.57 16 16 N -0.52 -16.49 2.62 -643.26 -1.69 -18.18 16 17 C 0.39 10.47 7.82 179.62 1.40 11.88 16 18 S -0.01 -0.13 23.73 -56.49 -1.34 -1.47 16 19 N -0.54 -13.82 10.24 -188.41 -1.93 -15.75 16 20 C 0.15 3.61 6.62 39.84 0.26 3.88 16 21 C -0.12 -1.96 9.99 22.28 0.22 -1.74 16 22 C -0.06 -0.65 9.95 22.05 0.22 -0.43 16 23 C -0.13 -1.78 9.97 22.08 0.22 -1.56 16 24 C -0.05 -1.20 9.63 22.21 0.21 -0.98 16 25 C -0.22 -6.19 5.90 -19.95 -0.12 -6.31 16 26 C 0.54 18.24 7.66 86.43 0.66 18.90 16 27 O -0.54 -21.12 16.31 -4.42 -0.07 -21.20 16 28 H 0.04 1.60 6.59 -2.39 -0.02 1.58 16 29 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.10 4.52 5.34 -2.38 -0.01 4.51 16 32 H 0.07 2.54 6.66 -2.39 -0.02 2.52 16 33 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 34 H 0.11 3.65 7.34 -2.39 -0.02 3.63 16 35 H 0.09 3.27 6.53 -2.39 -0.02 3.25 16 36 H 0.09 3.56 7.42 -2.39 -0.02 3.55 16 37 H 0.11 3.85 6.43 -2.39 -0.02 3.83 16 38 H 0.16 2.41 9.50 73.80 0.70 3.11 16 39 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 40 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 41 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 42 H 0.13 2.94 7.82 -2.91 -0.02 2.92 16 Total: -1.00 -73.08 367.05 3.98 -69.09 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 1.79 Total: 21.22 kcal Atomic # 6 Polarization: 21.61 SS G_CDS: 6.62 Total: 28.23 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -5.00 Total: -104.76 kcal Atomic # 8 Polarization: -56.21 SS G_CDS: -0.12 Total: -56.33 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -1.34 Total: -1.47 kcal Total: -73.08 3.98 -69.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124160555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.146 kcal (2) G-P(sol) polarization free energy of solvation -73.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds