Wall clock time and date at job start Wed Apr 1 2020 04:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37683 * 126.50284 * 2 1 4 4 C 1.50700 * 126.52094 * 359.96602 * 3 2 1 5 5 O 1.42894 * 109.47293 * 179.97438 * 4 3 2 6 6 C 1.34389 * 106.95922 * 179.97438 * 3 2 1 7 7 N 1.34355 * 108.34353 * 359.74704 * 6 3 2 8 8 C 1.31273 * 109.30991 * 0.43038 * 7 6 3 9 9 S 1.76195 * 125.80517 * 179.83596 * 8 7 6 10 10 C 1.80999 * 100.00185 * 359.69112 * 9 8 7 11 11 C 1.50699 * 109.47401 * 180.02562 * 10 9 8 12 12 O 1.21280 * 120.00019 * 354.84274 * 11 10 9 13 13 N 1.34778 * 120.00027 * 174.84304 * 11 10 9 14 14 C 1.37142 * 120.00088 * 5.67567 * 13 11 10 15 15 H 1.07996 * 119.99776 * 55.66431 * 14 13 11 16 16 C 1.38889 * 119.99576 * 235.66648 * 14 13 11 17 17 N 1.31415 * 120.00269 * 9.24641 * 16 14 13 18 18 Si 1.86809 * 119.99513 * 189.24548 * 16 14 13 19 19 H 1.48502 * 109.46980 * 60.00169 * 18 16 14 20 20 H 1.48496 * 109.46739 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46939 * 300.00272 * 18 16 14 22 22 C 1.39791 * 119.99821 * 185.67595 * 13 11 10 23 23 C 1.38958 * 120.07731 * 175.19364 * 22 13 11 24 24 C 1.38078 * 119.92360 * 179.97438 * 23 22 13 25 25 C 1.38313 * 120.07474 * 359.97438 * 24 23 22 26 26 C 1.38301 * 120.15868 * 0.02562 * 25 24 23 27 27 C 1.38085 * 120.07997 * 359.97438 * 26 25 24 28 28 H 1.09005 * 109.46667 * 269.99304 * 1 2 3 29 29 H 1.08999 * 109.47435 * 29.99387 * 1 2 3 30 30 H 1.09005 * 109.46941 * 149.99930 * 1 2 3 31 31 H 1.08995 * 109.47202 * 299.99845 * 4 3 2 32 32 H 1.09006 * 109.46674 * 59.99443 * 4 3 2 33 33 H 0.96702 * 114.00312 * 179.97438 * 5 4 3 34 34 H 1.08000 * 125.82751 * 179.97438 * 6 3 2 35 35 H 1.08996 * 109.47096 * 59.99608 * 10 9 8 36 36 H 1.09005 * 109.47006 * 300.00417 * 10 9 8 37 37 H 0.96999 * 119.99735 * 184.97751 * 17 16 14 38 38 H 1.07999 * 120.03902 * 359.69484 * 23 22 13 39 39 H 1.07996 * 119.96260 * 179.97438 * 24 23 22 40 40 H 1.08006 * 119.91697 * 179.97438 * 25 24 23 41 41 H 1.08005 * 119.96442 * 179.97438 * 26 25 24 42 42 H 1.07997 * 120.04507 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2840 1.1067 0.0000 4 6 1.8440 2.5481 -0.0007 5 8 2.9934 3.3970 0.0001 6 6 3.5505 0.6572 0.0006 7 7 3.5223 -0.6861 0.0066 8 6 2.2747 -1.0942 0.0004 9 16 1.7391 -2.7727 0.0006 10 6 3.3418 -3.6140 0.0014 11 6 3.1262 -5.1055 0.0010 12 8 2.0042 -5.5561 0.0947 13 7 4.1805 -5.9387 -0.1034 14 6 5.4561 -5.4353 -0.0921 15 1 5.7860 -4.8188 0.7309 16 6 6.3236 -5.7184 -1.1392 17 7 5.8746 -6.3115 -2.2225 18 14 8.1288 -5.2561 -1.0074 19 1 8.7338 -5.9505 0.1576 20 1 8.8356 -5.6626 -2.2484 21 1 8.2516 -3.7873 -0.8267 22 6 3.9736 -7.3160 -0.2233 23 6 5.0524 -8.1668 -0.4312 24 6 4.8445 -9.5268 -0.5486 25 6 3.5642 -10.0425 -0.4590 26 6 2.4882 -9.1987 -0.2521 27 6 2.6887 -7.8376 -0.1337 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3633 -0.8900 -0.5139 31 1 1.2469 2.7452 -0.8910 32 1 1.2459 2.7458 0.8889 33 1 2.7850 4.3413 -0.0007 34 1 4.4391 1.2709 0.0003 35 1 3.9020 -3.3277 0.8915 36 1 3.9026 -3.3280 -0.8885 37 1 6.4921 -6.5743 -2.9229 38 1 6.0519 -7.7643 -0.5054 39 1 5.6824 -10.1885 -0.7107 40 1 3.4045 -11.1066 -0.5516 41 1 1.4897 -9.6048 -0.1830 42 1 1.8479 -7.1792 0.0274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172829882.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:14 Heat of formation + Delta-G solvation = 37.518304 kcal Electronic energy + Delta-G solvation = -27273.463446 eV Core-core repulsion = 23347.330264 eV Total energy + Delta-G solvation = -3926.133182 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.79210 -39.75565 -37.25658 -37.11047 -35.09961 -34.06139 -32.01472 -30.72259 -30.20304 -29.61766 -27.82678 -27.02907 -25.92093 -25.20149 -21.91114 -21.72209 -21.22800 -20.26176 -19.48987 -18.05447 -17.63782 -17.34638 -16.34998 -16.18084 -15.62210 -15.42887 -15.15293 -14.80671 -14.57967 -14.49091 -14.35440 -13.85804 -13.46854 -13.40373 -13.10984 -12.90008 -12.76976 -12.67545 -12.54155 -12.25194 -12.02793 -11.70309 -11.48496 -11.27865 -11.10438 -10.86341 -10.73174 -10.51309 -10.25387 -10.07125 -9.88253 -9.55537 -9.27971 -9.04006 -8.76758 -8.29082 -7.81836 -7.11723 -6.91054 -6.35617 -4.58559 1.42481 1.87942 2.35818 2.46732 2.54452 2.76704 3.08586 3.15186 3.16359 3.17521 3.63300 3.91698 3.96242 4.44779 4.53622 4.68039 4.73242 4.85922 4.91540 5.06054 5.09241 5.20736 5.25891 5.61524 5.75009 5.82117 5.85914 6.00837 6.13791 6.22549 6.25233 6.68100 6.70557 6.79588 6.87241 6.92085 7.10922 7.22856 7.24085 7.48207 7.57998 7.65130 7.72205 8.02265 8.04829 8.37529 8.79892 9.11153 9.51012 10.45000 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013885 B = 0.003096 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.018416 B = 9041.450874 C =10864.395913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.446 5.446 3 C -0.048 4.048 4 C 0.167 3.833 5 O -0.560 6.560 6 C 0.017 3.983 7 N -0.487 5.487 8 C 0.193 3.807 9 S 0.031 5.969 10 C -0.098 4.098 11 C 0.508 3.492 12 O -0.558 6.558 13 N -0.372 5.372 14 C -0.374 4.374 15 H 0.096 0.904 16 C 0.060 3.940 17 N -0.839 5.839 18 Si 0.914 3.086 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.265 1.265 22 C 0.183 3.817 23 C -0.102 4.102 24 C -0.124 4.124 25 C -0.171 4.171 26 C -0.121 4.121 27 C -0.190 4.190 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.387 0.613 34 H 0.174 0.826 35 H 0.116 0.884 36 H 0.125 0.875 37 H 0.276 0.724 38 H 0.132 0.868 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.922 12.960 3.052 15.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.134 5.134 3 C -0.164 4.164 4 C 0.088 3.912 5 O -0.365 6.365 6 C -0.134 4.134 7 N -0.209 5.209 8 C -0.177 4.177 9 S 0.260 5.740 10 C -0.249 4.249 11 C 0.298 3.702 12 O -0.443 6.443 13 N -0.079 5.079 14 C -0.502 4.502 15 H 0.114 0.886 16 C -0.151 4.151 17 N -0.471 5.471 18 Si 0.739 3.261 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.189 1.189 22 C 0.086 3.914 23 C -0.123 4.123 24 C -0.143 4.143 25 C -0.190 4.190 26 C -0.139 4.139 27 C -0.210 4.210 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.235 0.765 34 H 0.191 0.809 35 H 0.134 0.866 36 H 0.143 0.857 37 H 0.087 0.913 38 H 0.150 0.850 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -8.631 11.266 2.865 14.479 hybrid contribution 1.441 1.741 -0.286 2.278 sum -7.190 13.008 2.579 15.085 Atomic orbital electron populations 1.22081 0.76434 1.04812 1.03833 1.45066 1.06910 1.04525 1.56913 1.20683 0.91607 0.88702 1.15397 1.19862 0.86988 0.84597 0.99746 1.86434 1.31947 1.20410 1.97708 1.22063 0.96028 0.90476 1.04791 1.70930 1.16990 1.11803 1.21176 1.25714 0.88392 0.95409 1.08159 1.85700 1.10301 0.85186 1.92827 1.23388 0.96665 0.95415 1.09438 1.19989 0.84344 0.87207 0.78660 1.90217 1.24326 1.75974 1.53765 1.40798 1.05933 1.02111 1.59065 1.19354 0.87552 1.36373 1.06880 0.88622 1.25603 1.00838 0.95126 0.93497 1.70019 1.36058 1.35439 1.05557 0.86189 0.81755 0.80006 0.78177 1.19240 1.20511 1.18928 1.18252 0.93263 0.83735 0.96143 1.21038 0.99692 0.91738 0.99837 1.20776 0.96233 0.94934 1.02344 1.20810 0.93419 0.98331 1.06467 1.20864 0.97568 0.93758 1.01759 1.22775 0.98563 0.96091 1.03526 0.90232 0.89766 0.88841 0.92699 0.92663 0.76539 0.80914 0.86567 0.85663 0.91312 0.84988 0.87693 0.88118 0.87647 0.80824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 10.84 59.85 0.65 1.28 16 2 N -0.45 -6.09 3.20 -119.72 -0.38 -6.47 16 3 C -0.05 -0.65 6.94 -81.32 -0.56 -1.21 16 4 C 0.17 1.44 7.19 36.01 0.26 1.70 16 5 O -0.56 -4.82 12.97 -35.23 -0.46 -5.27 16 6 C 0.02 0.27 11.20 -17.81 -0.20 0.07 16 7 N -0.49 -9.12 10.60 -13.45 -0.14 -9.26 16 8 C 0.19 3.30 7.96 -88.74 -0.71 2.59 16 9 S 0.03 0.54 20.77 -107.50 -2.23 -1.69 16 10 C -0.10 -2.01 4.50 36.01 0.16 -1.85 16 11 C 0.51 11.94 7.58 -10.99 -0.08 11.86 16 12 O -0.56 -13.44 12.26 5.56 0.07 -13.37 16 13 N -0.37 -9.29 2.62 -58.98 -0.15 -9.45 16 14 C -0.37 -9.21 7.61 -14.93 -0.11 -9.32 16 15 H 0.10 2.26 7.85 -52.49 -0.41 1.84 16 16 C 0.06 1.45 3.49 -17.49 -0.06 1.39 16 17 N -0.84 -21.69 11.39 55.49 0.63 -21.06 16 18 Si 0.91 18.92 29.57 -169.99 -5.03 13.89 16 19 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 20 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 22 C 0.18 4.57 6.05 -83.69 -0.51 4.06 16 23 C -0.10 -2.44 7.87 -39.37 -0.31 -2.75 16 24 C -0.12 -2.60 10.04 -39.61 -0.40 -2.99 16 25 C -0.17 -3.38 10.04 -39.53 -0.40 -3.77 16 26 C -0.12 -2.49 10.04 -39.61 -0.40 -2.89 16 27 C -0.19 -4.48 9.06 -39.37 -0.36 -4.84 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.51 7.91 -51.93 -0.41 0.10 16 30 H 0.09 0.84 7.74 -51.93 -0.40 0.43 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.39 1.19 9.12 45.56 0.42 1.60 16 34 H 0.17 2.56 7.85 -52.49 -0.41 2.14 16 35 H 0.12 2.31 8.14 -51.92 -0.42 1.89 16 36 H 0.13 2.73 8.04 -51.91 -0.42 2.31 16 37 H 0.28 6.79 8.32 -40.82 -0.34 6.45 16 38 H 0.13 3.26 5.15 -52.49 -0.27 2.98 16 39 H 0.10 1.91 8.06 -52.49 -0.42 1.48 16 40 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 41 H 0.11 1.87 8.06 -52.48 -0.42 1.44 16 42 H 0.18 4.21 4.50 -56.38 -0.25 3.96 16 LS Contribution 368.35 15.07 5.55 5.55 Total: -1.00 -31.93 368.35 -9.43 -41.35 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -4.26 Total: 12.46 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -3.02 Total: -6.67 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: -0.05 Total: -46.24 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.39 Total: -18.64 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Atomic # 16 Polarization: 0.54 SS G_CDS: -2.23 Total: -1.69 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.93 -9.43 -41.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172829882.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.871 kcal (2) G-P(sol) polarization free energy of solvation -31.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds