Wall clock time and date at job start Wed Apr 1 2020 04:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37683 * 126.50284 * 2 1 4 4 C 1.50700 * 126.52094 * 359.96602 * 3 2 1 5 5 O 1.42894 * 109.47293 * 179.97438 * 4 3 2 6 6 C 1.34389 * 106.95922 * 179.97438 * 3 2 1 7 7 N 1.34355 * 108.34353 * 359.74704 * 6 3 2 8 8 C 1.31273 * 109.30991 * 0.43038 * 7 6 3 9 9 S 1.76195 * 125.80517 * 179.83596 * 8 7 6 10 10 C 1.80999 * 100.00185 * 359.69112 * 9 8 7 11 11 C 1.50699 * 109.47401 * 180.02562 * 10 9 8 12 12 O 1.21280 * 120.00019 * 354.84274 * 11 10 9 13 13 N 1.34778 * 120.00027 * 174.84304 * 11 10 9 14 14 C 1.37142 * 120.00088 * 5.67567 * 13 11 10 15 15 H 1.07996 * 119.99776 * 55.66431 * 14 13 11 16 16 C 1.38889 * 119.99576 * 235.66648 * 14 13 11 17 17 N 1.31415 * 120.00269 * 9.24641 * 16 14 13 18 18 Si 1.86809 * 119.99513 * 189.24548 * 16 14 13 19 19 H 1.48502 * 109.46980 * 60.00169 * 18 16 14 20 20 H 1.48496 * 109.46739 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46939 * 300.00272 * 18 16 14 22 22 C 1.39791 * 119.99821 * 185.67595 * 13 11 10 23 23 C 1.38958 * 120.07731 * 175.19364 * 22 13 11 24 24 C 1.38078 * 119.92360 * 179.97438 * 23 22 13 25 25 C 1.38313 * 120.07474 * 359.97438 * 24 23 22 26 26 C 1.38301 * 120.15868 * 0.02562 * 25 24 23 27 27 C 1.38085 * 120.07997 * 359.97438 * 26 25 24 28 28 H 1.09005 * 109.46667 * 269.99304 * 1 2 3 29 29 H 1.08999 * 109.47435 * 29.99387 * 1 2 3 30 30 H 1.09005 * 109.46941 * 149.99930 * 1 2 3 31 31 H 1.08995 * 109.47202 * 299.99845 * 4 3 2 32 32 H 1.09006 * 109.46674 * 59.99443 * 4 3 2 33 33 H 0.96702 * 114.00312 * 179.97438 * 5 4 3 34 34 H 1.08000 * 125.82751 * 179.97438 * 6 3 2 35 35 H 1.08996 * 109.47096 * 59.99608 * 10 9 8 36 36 H 1.09005 * 109.47006 * 300.00417 * 10 9 8 37 37 H 0.96999 * 119.99735 * 184.97751 * 17 16 14 38 38 H 1.07999 * 120.03902 * 359.69484 * 23 22 13 39 39 H 1.07996 * 119.96260 * 179.97438 * 24 23 22 40 40 H 1.08006 * 119.91697 * 179.97438 * 25 24 23 41 41 H 1.08005 * 119.96442 * 179.97438 * 26 25 24 42 42 H 1.07997 * 120.04507 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2840 1.1067 0.0000 4 6 1.8440 2.5481 -0.0007 5 8 2.9934 3.3970 0.0001 6 6 3.5505 0.6572 0.0006 7 7 3.5223 -0.6861 0.0066 8 6 2.2747 -1.0942 0.0004 9 16 1.7391 -2.7727 0.0006 10 6 3.3418 -3.6140 0.0014 11 6 3.1262 -5.1055 0.0010 12 8 2.0042 -5.5561 0.0947 13 7 4.1805 -5.9387 -0.1034 14 6 5.4561 -5.4353 -0.0921 15 1 5.7860 -4.8188 0.7309 16 6 6.3236 -5.7184 -1.1392 17 7 5.8746 -6.3115 -2.2225 18 14 8.1288 -5.2561 -1.0074 19 1 8.7338 -5.9505 0.1576 20 1 8.8356 -5.6626 -2.2484 21 1 8.2516 -3.7873 -0.8267 22 6 3.9736 -7.3160 -0.2233 23 6 5.0524 -8.1668 -0.4312 24 6 4.8445 -9.5268 -0.5486 25 6 3.5642 -10.0425 -0.4590 26 6 2.4882 -9.1987 -0.2521 27 6 2.6887 -7.8376 -0.1337 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3633 -0.8900 -0.5139 31 1 1.2469 2.7452 -0.8910 32 1 1.2459 2.7458 0.8889 33 1 2.7850 4.3413 -0.0007 34 1 4.4391 1.2709 0.0003 35 1 3.9020 -3.3277 0.8915 36 1 3.9026 -3.3280 -0.8885 37 1 6.4921 -6.5743 -2.9229 38 1 6.0519 -7.7643 -0.5054 39 1 5.6824 -10.1885 -0.7107 40 1 3.4045 -11.1066 -0.5516 41 1 1.4897 -9.6048 -0.1830 42 1 1.8479 -7.1792 0.0274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172829882.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:13 Heat of formation + Delta-G solvation = 17.113274 kcal Electronic energy + Delta-G solvation = -27274.348274 eV Core-core repulsion = 23347.330264 eV Total energy + Delta-G solvation = -3927.018011 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.92280 -41.55853 -38.99240 -37.74131 -36.91781 -35.11342 -33.89389 -32.03788 -31.58075 -31.32149 -29.52044 -27.91406 -27.11332 -26.80851 -23.61536 -23.02664 -22.83590 -21.56221 -21.04155 -19.69726 -18.64928 -18.28476 -18.10587 -17.47269 -17.13518 -16.90405 -16.53506 -16.38974 -16.10132 -15.46680 -15.41295 -15.17401 -15.01015 -14.76659 -14.59582 -14.39961 -14.28190 -13.89147 -13.88188 -13.59630 -13.46845 -13.24596 -13.06210 -12.83603 -12.78315 -12.50814 -12.17490 -11.78142 -11.72002 -11.38960 -11.08871 -11.08222 -10.61596 -10.58591 -10.22511 -10.09776 -9.53750 -8.75887 -8.41881 -8.18992 -6.51130 0.06471 0.62685 0.76417 0.81281 0.98998 1.41370 1.42594 1.51683 1.78719 1.85338 1.94744 2.21903 2.70431 2.87979 3.28824 3.33521 3.73886 3.84132 3.94217 4.11897 4.15606 4.26826 4.30906 4.32929 4.36275 4.48857 4.50485 4.59146 4.61207 4.68325 4.93622 4.99056 5.12888 5.21600 5.32437 5.41581 5.64747 5.78520 5.86492 5.87475 5.89272 5.99463 6.20264 6.58082 6.77588 6.91504 6.97723 7.27353 7.65514 8.59090 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013885 B = 0.003096 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.018416 B = 9041.450874 C =10864.395913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.438 5.438 3 C -0.022 4.022 4 C 0.170 3.830 5 O -0.582 6.582 6 C -0.027 4.027 7 N -0.525 5.525 8 C 0.161 3.839 9 S 0.048 5.952 10 C -0.088 4.088 11 C 0.497 3.503 12 O -0.569 6.569 13 N -0.385 5.385 14 C -0.387 4.387 15 H 0.096 0.904 16 C 0.029 3.971 17 N -0.871 5.871 18 Si 0.976 3.024 19 H -0.259 1.259 20 H -0.277 1.277 21 H -0.266 1.266 22 C 0.149 3.851 23 C -0.124 4.124 24 C -0.124 4.124 25 C -0.161 4.161 26 C -0.118 4.118 27 C -0.213 4.213 28 H 0.098 0.902 29 H 0.122 0.878 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.411 0.589 34 H 0.175 0.825 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.277 0.723 38 H 0.117 0.883 39 H 0.134 0.866 40 H 0.144 0.856 41 H 0.138 0.862 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.109 13.642 3.200 16.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.125 5.125 3 C -0.140 4.140 4 C 0.091 3.909 5 O -0.392 6.392 6 C -0.177 4.177 7 N -0.248 5.248 8 C -0.209 4.209 9 S 0.277 5.723 10 C -0.240 4.240 11 C 0.287 3.713 12 O -0.455 6.455 13 N -0.093 5.093 14 C -0.513 4.513 15 H 0.114 0.886 16 C -0.179 4.179 17 N -0.504 5.504 18 Si 0.798 3.202 19 H -0.183 1.183 20 H -0.202 1.202 21 H -0.191 1.191 22 C 0.053 3.947 23 C -0.145 4.145 24 C -0.143 4.143 25 C -0.180 4.180 26 C -0.137 4.137 27 C -0.233 4.233 28 H 0.117 0.883 29 H 0.140 0.860 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.263 0.737 34 H 0.192 0.808 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.087 0.913 38 H 0.135 0.865 39 H 0.152 0.848 40 H 0.162 0.838 41 H 0.156 0.844 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.852 11.963 3.026 15.790 hybrid contribution 1.710 1.599 -0.318 2.363 sum -8.141 13.562 2.708 16.048 Atomic orbital electron populations 1.22513 0.73439 1.06557 1.05660 1.45336 1.08609 1.03454 1.55078 1.21486 0.90656 0.90846 1.11011 1.20066 0.87146 0.81395 1.02334 1.86385 1.32539 1.22409 1.97842 1.22279 0.97804 0.89804 1.07818 1.70780 1.18535 1.13610 1.21828 1.25432 0.88892 0.95690 1.10877 1.85363 1.07657 0.85828 1.93454 1.23102 0.98664 0.94000 1.08199 1.20417 0.84146 0.88296 0.78402 1.90193 1.24537 1.76512 1.54296 1.41012 1.06260 1.02681 1.59323 1.19569 0.87954 1.36627 1.07199 0.88618 1.26283 1.04261 0.94554 0.92784 1.70119 1.37272 1.36707 1.06284 0.85263 0.77162 0.79448 0.78360 1.18319 1.20156 1.19063 1.18623 0.94361 0.83989 0.97721 1.21078 0.98765 0.93189 1.01463 1.21162 0.98090 0.94047 1.00981 1.21256 0.92297 1.00346 1.04081 1.21252 0.99675 0.92578 1.00190 1.22812 0.97719 0.97658 1.05063 0.88325 0.86008 0.89202 0.89874 0.89786 0.73711 0.80785 0.86808 0.87719 0.91349 0.86521 0.84802 0.83838 0.84412 0.82010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.88 10.84 127.77 1.38 2.26 16 2 N -0.44 -11.37 3.20 -532.68 -1.71 -13.08 16 3 C -0.02 -0.56 6.94 40.76 0.28 -0.28 16 4 C 0.17 2.30 7.19 71.24 0.51 2.82 16 5 O -0.58 -8.46 12.97 -148.98 -1.93 -10.39 16 6 C -0.03 -0.90 11.20 83.43 0.93 0.04 16 7 N -0.52 -20.46 10.60 -196.47 -2.08 -22.54 16 8 C 0.16 5.61 7.96 179.69 1.43 7.04 16 9 S 0.05 1.77 20.77 -56.49 -1.17 0.59 16 10 C -0.09 -3.87 4.50 71.24 0.32 -3.55 16 11 C 0.50 24.70 7.58 87.66 0.66 25.36 16 12 O -0.57 -28.74 12.26 -3.03 -0.04 -28.77 16 13 N -0.39 -20.24 2.62 -458.89 -1.20 -21.44 16 14 C -0.39 -19.94 7.61 84.02 0.64 -19.30 16 15 H 0.10 4.77 7.85 -2.91 -0.02 4.75 16 16 C 0.03 1.43 3.49 84.91 0.30 1.73 16 17 N -0.87 -46.56 11.39 21.65 0.25 -46.31 16 18 Si 0.98 39.78 29.57 68.60 2.03 41.81 16 19 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 20 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 21 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 22 C 0.15 7.71 6.05 38.22 0.23 7.94 16 23 C -0.12 -6.03 7.87 22.40 0.18 -5.85 16 24 C -0.12 -5.02 10.04 22.25 0.22 -4.79 16 25 C -0.16 -5.90 10.04 22.30 0.22 -5.68 16 26 C -0.12 -4.70 10.04 22.25 0.22 -4.48 16 27 C -0.21 -10.22 9.06 22.41 0.20 -10.01 16 28 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.12 0.93 7.91 -2.39 -0.02 0.91 16 30 H 0.09 1.45 7.74 -2.38 -0.02 1.43 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.41 1.22 9.12 -74.06 -0.68 0.54 16 34 H 0.17 5.35 7.85 -2.91 -0.02 5.32 16 35 H 0.11 4.90 8.14 -2.40 -0.02 4.88 16 36 H 0.10 4.95 8.04 -2.39 -0.02 4.93 16 37 H 0.28 13.98 8.32 -92.71 -0.77 13.21 16 38 H 0.12 5.93 5.15 -2.91 -0.02 5.92 16 39 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 40 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 41 H 0.14 4.49 8.06 -2.91 -0.02 4.46 16 42 H 0.16 8.13 4.50 -64.47 -0.29 7.84 16 Total: -1.00 -73.45 368.35 2.01 -71.45 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: 0.12 Total: 35.44 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 7.75 Total: -6.76 kcal Atomic # 7 Polarization: -98.62 SS G_CDS: -4.75 Total: -103.37 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -1.97 Total: -39.16 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -1.17 Total: 0.59 kcal Total: -73.45 2.01 -71.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172829882.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.562 kcal (2) G-P(sol) polarization free energy of solvation -73.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds