Wall clock time and date at job start Wed Apr 1 2020 04:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37690 * 126.49933 * 2 1 4 4 C 1.50694 * 126.51891 * 359.96545 * 3 2 1 5 5 O 1.42901 * 109.46772 * 179.97438 * 4 3 2 6 6 C 1.34386 * 106.95723 * 179.97438 * 3 2 1 7 7 N 1.34366 * 108.34411 * 359.75052 * 6 3 2 8 8 C 1.31273 * 109.30535 * 0.42681 * 7 6 3 9 9 S 1.76199 * 125.80037 * 179.83475 * 8 7 6 10 10 C 1.80994 * 100.00103 * 359.69370 * 9 8 7 11 11 C 1.50704 * 109.47345 * 180.02562 * 10 9 8 12 12 O 1.21280 * 119.99747 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00410 * 180.02562 * 11 10 9 14 14 C 1.39236 * 120.00133 * 185.17093 * 13 11 10 15 15 C 1.39485 * 119.83251 * 144.29578 * 14 13 11 16 16 C 1.36377 * 120.16457 * 180.21127 * 15 14 13 17 17 C 1.40869 * 119.82692 * 359.51681 * 16 15 14 18 18 C 1.41155 * 120.16095 * 180.27569 * 17 16 15 19 19 H 1.08006 * 120.00183 * 335.07728 * 18 17 16 20 20 C 1.39897 * 120.00032 * 155.07636 * 18 17 16 21 21 N 1.30868 * 120.00067 * 341.96772 * 20 18 17 22 22 Si 1.86805 * 119.99985 * 161.96669 * 20 18 17 23 23 H 1.48504 * 109.47173 * 94.98317 * 22 20 18 24 24 H 1.48498 * 109.47115 * 214.98027 * 22 20 18 25 25 H 1.48492 * 109.47183 * 334.98303 * 22 20 18 26 26 C 1.40863 * 119.67492 * 0.25720 * 17 16 15 27 27 C 1.36371 * 119.83051 * 359.97438 * 26 17 16 28 28 H 1.08991 * 109.47384 * 269.99110 * 1 2 3 29 29 H 1.09000 * 109.47592 * 29.99836 * 1 2 3 30 30 H 1.09007 * 109.46847 * 149.99734 * 1 2 3 31 31 H 1.08998 * 109.46979 * 299.99188 * 4 3 2 32 32 H 1.09003 * 109.47370 * 59.99497 * 4 3 2 33 33 H 0.96705 * 113.99720 * 179.97438 * 5 4 3 34 34 H 1.07993 * 125.82889 * 179.97438 * 6 3 2 35 35 H 1.09003 * 109.47296 * 59.99965 * 10 9 8 36 36 H 1.09007 * 109.47339 * 299.99761 * 10 9 8 37 37 H 0.97001 * 119.99463 * 5.16372 * 13 11 10 38 38 H 1.08001 * 119.91840 * 0.02562 * 15 14 13 39 39 H 1.08000 * 120.07917 * 179.79780 * 16 15 14 40 40 H 0.97001 * 120.00312 * 179.97438 * 21 20 18 41 41 H 1.08001 * 120.08274 * 180.02562 * 26 17 16 42 42 H 1.08000 * 119.92245 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2840 1.1068 0.0000 4 6 1.8439 2.5481 -0.0007 5 8 2.9933 3.3971 0.0001 6 6 3.5504 0.6573 0.0006 7 7 3.5223 -0.6860 0.0065 8 6 2.2747 -1.0941 0.0004 9 16 1.7392 -2.7727 0.0005 10 6 3.3418 -3.6139 0.0012 11 6 3.1264 -5.1054 0.0007 12 8 2.0001 -5.5554 0.0004 13 7 4.1852 -5.9393 0.0016 14 6 3.9892 -7.3135 -0.1075 15 6 4.9028 -8.0903 -0.8199 16 6 4.7152 -9.4362 -0.9347 17 6 3.6007 -10.0430 -0.3229 18 6 3.4028 -11.4363 -0.4324 19 1 3.8234 -11.9776 -1.2669 20 6 2.6617 -12.1160 0.5402 21 7 2.4532 -11.5641 1.7083 22 14 1.9697 -13.8115 0.1714 23 1 2.9087 -14.8485 0.6697 24 1 0.6563 -13.9677 0.8465 25 1 1.7941 -13.9663 -1.2949 26 6 2.6850 -9.2525 0.3988 27 6 2.8833 -7.9071 0.5009 28 1 -0.3634 -0.0002 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 1.2469 2.7452 -0.8911 32 1 1.2458 2.7458 0.8889 33 1 2.7848 4.3414 -0.0007 34 1 4.4391 1.2710 0.0003 35 1 3.9020 -3.3276 0.8913 36 1 3.9027 -3.3279 -0.8887 37 1 5.0837 -5.5821 0.0782 38 1 5.7593 -7.6243 -1.2842 39 1 5.4217 -10.0359 -1.4893 40 1 1.9390 -12.0352 2.3826 41 1 1.8285 -9.7109 0.8708 42 1 2.1824 -7.2997 1.0543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172830358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:11 Heat of formation + Delta-G solvation = 6.622566 kcal Electronic energy + Delta-G solvation = -25870.393257 eV Core-core repulsion = 21942.920335 eV Total energy + Delta-G solvation = -3927.472922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.11181 -39.65897 -37.31657 -37.26171 -34.51627 -34.36179 -33.02892 -31.01429 -30.40979 -29.44695 -28.53316 -27.30650 -26.23662 -24.80581 -22.06385 -21.61407 -21.14263 -20.48645 -19.60443 -18.08952 -17.84768 -17.33679 -16.75381 -16.49499 -16.46294 -15.65642 -15.44740 -15.10654 -14.93936 -14.74968 -14.14569 -13.99108 -13.75774 -13.57773 -13.40534 -13.21860 -13.04376 -12.68926 -12.51976 -12.29976 -12.04172 -11.84512 -11.35900 -11.13609 -11.07860 -10.95017 -10.73735 -10.68210 -10.28619 -10.01315 -9.86527 -9.71048 -9.47066 -9.38663 -9.06216 -8.92566 -7.53058 -7.49465 -7.03918 -6.75704 -4.31209 0.97901 1.57109 1.95814 2.45310 2.51625 2.82556 2.94585 3.07387 3.10467 3.13057 3.29485 3.67802 3.68680 3.92746 4.29028 4.44647 4.60915 4.65125 4.69780 4.84904 4.90194 4.98405 5.01872 5.04966 5.35012 5.45892 5.70246 5.93601 6.14825 6.39628 6.48016 6.60871 6.76034 6.96408 7.02338 7.03553 7.13288 7.27186 7.58021 7.64001 7.65921 7.92561 8.04756 8.15820 8.28486 8.60527 8.66979 8.87190 8.98402 10.16389 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.033088 B = 0.001743 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.018045 B =16060.688971 C =16671.865767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.443 5.443 3 C -0.040 4.040 4 C 0.165 3.835 5 O -0.561 6.561 6 C 0.016 3.984 7 N -0.493 5.493 8 C 0.183 3.817 9 S 0.061 5.939 10 C -0.134 4.134 11 C 0.515 3.485 12 O -0.519 6.519 13 N -0.640 5.640 14 C -0.013 4.013 15 C -0.100 4.100 16 C -0.216 4.216 17 C 0.107 3.893 18 C -0.457 4.457 19 H 0.079 0.921 20 C 0.075 3.925 21 N -0.788 5.788 22 Si 0.908 3.092 23 H -0.270 1.270 24 H -0.275 1.275 25 H -0.260 1.260 26 C -0.158 4.158 27 C -0.083 4.083 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.389 0.611 34 H 0.176 0.824 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.398 0.602 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.281 0.719 41 H 0.120 0.880 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.202 25.623 -1.414 25.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.130 5.130 3 C -0.156 4.156 4 C 0.085 3.915 5 O -0.366 6.366 6 C -0.135 4.135 7 N -0.216 5.216 8 C -0.186 4.186 9 S 0.290 5.710 10 C -0.286 4.286 11 C 0.299 3.701 12 O -0.396 6.396 13 N -0.283 5.283 14 C -0.106 4.106 15 C -0.120 4.120 16 C -0.236 4.236 17 C 0.104 3.896 18 C -0.486 4.486 19 H 0.097 0.903 20 C -0.143 4.143 21 N -0.413 5.413 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.200 1.200 25 H -0.184 1.184 26 C -0.178 4.178 27 C -0.103 4.103 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.237 0.763 34 H 0.193 0.807 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.231 0.769 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.092 0.908 41 H 0.137 0.863 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.368 23.715 -1.184 24.143 hybrid contribution 0.497 1.155 -0.002 1.257 sum -3.872 24.870 -1.186 25.197 Atomic orbital electron populations 1.22141 0.76065 1.05058 1.04145 1.45054 1.07109 1.04481 1.56386 1.20758 0.91522 0.88850 1.14503 1.19895 0.87104 0.84432 1.00021 1.86416 1.31880 1.20586 1.97720 1.22050 0.96152 0.90287 1.04968 1.70837 1.16954 1.12117 1.21647 1.25695 0.88587 0.95534 1.08834 1.86088 1.07240 0.84724 1.92991 1.23630 0.99970 0.95974 1.09048 1.19566 0.85784 0.86438 0.78278 1.90733 1.22753 1.77046 1.49051 1.42766 1.08372 1.05858 1.71302 1.17148 1.02806 0.80277 1.10336 1.20047 0.98309 0.94457 0.99175 1.20534 0.99903 0.93551 1.09642 1.17685 0.89156 0.93334 0.89387 1.19564 1.28543 0.92958 1.07580 0.90322 1.25936 0.94139 1.00284 0.93976 1.69847 1.29775 1.38558 1.03137 0.86310 0.78910 0.81518 0.80083 1.19572 1.19989 1.18377 1.20976 1.00717 0.91582 1.04530 1.20538 0.96480 0.94996 0.98308 0.89952 0.89471 0.88744 0.92485 0.92435 0.76303 0.80725 0.86106 0.86048 0.76860 0.89086 0.88569 0.90770 0.86269 0.87526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.44 10.84 59.85 0.65 1.09 16 2 N -0.44 -4.69 3.20 -119.73 -0.38 -5.07 16 3 C -0.04 -0.42 6.94 -81.32 -0.56 -0.99 16 4 C 0.16 1.02 7.19 36.00 0.26 1.28 16 5 O -0.56 -3.51 12.97 -35.23 -0.46 -3.96 16 6 C 0.02 0.19 11.20 -17.80 -0.20 -0.01 16 7 N -0.49 -6.99 10.60 -13.45 -0.14 -7.14 16 8 C 0.18 2.41 7.96 -88.75 -0.71 1.70 16 9 S 0.06 0.82 20.77 -107.50 -2.23 -1.41 16 10 C -0.13 -1.80 5.68 36.01 0.20 -1.60 16 11 C 0.52 8.99 7.68 -10.98 -0.08 8.91 16 12 O -0.52 -11.07 13.30 5.56 0.07 -11.00 16 13 N -0.64 -11.23 5.30 -9.74 -0.05 -11.29 16 14 C -0.01 -0.30 6.30 -83.57 -0.53 -0.83 16 15 C -0.10 -2.18 9.90 -39.79 -0.39 -2.58 16 16 C -0.22 -5.23 9.74 -39.26 -0.38 -5.62 16 17 C 0.11 2.87 5.57 -106.80 -0.59 2.27 16 18 C -0.46 -12.11 9.03 -37.85 -0.34 -12.45 16 19 H 0.08 1.99 7.91 -52.48 -0.42 1.57 16 20 C 0.08 1.89 5.13 -17.34 -0.09 1.80 16 21 N -0.79 -20.47 10.99 55.54 0.61 -19.86 16 22 Si 0.91 18.65 29.60 -169.99 -5.03 13.62 16 23 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 25 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 26 C -0.16 -4.24 8.64 -39.26 -0.34 -4.58 16 27 C -0.08 -2.08 8.61 -39.79 -0.34 -2.42 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.33 7.91 -51.93 -0.41 -0.08 16 30 H 0.09 0.62 7.74 -51.93 -0.40 0.21 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.39 0.39 9.12 45.56 0.42 0.80 16 34 H 0.18 1.96 7.85 -52.49 -0.41 1.54 16 35 H 0.12 1.46 8.14 -51.91 -0.42 1.04 16 36 H 0.12 1.48 8.14 -51.91 -0.42 1.06 16 37 H 0.40 5.44 8.82 -40.82 -0.36 5.08 16 38 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 40 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 41 H 0.12 3.31 6.19 -52.49 -0.32 2.99 16 42 H 0.11 2.66 6.24 -52.49 -0.33 2.33 16 LS Contribution 375.35 15.07 5.66 5.66 Total: -1.00 -34.27 375.35 -9.74 -44.01 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -4.33 Total: 10.45 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -3.45 Total: -14.01 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.03 Total: -43.36 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.38 Total: -14.96 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.23 Total: -1.41 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.27 -9.74 -44.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172830358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.635 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds