Wall clock time and date at job start Wed Apr 1 2020 04:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37690 * 126.49933 * 2 1 4 4 C 1.50694 * 126.51891 * 359.96545 * 3 2 1 5 5 O 1.42901 * 109.46772 * 179.97438 * 4 3 2 6 6 C 1.34386 * 106.95723 * 179.97438 * 3 2 1 7 7 N 1.34366 * 108.34411 * 359.75052 * 6 3 2 8 8 C 1.31273 * 109.30535 * 0.42681 * 7 6 3 9 9 S 1.76199 * 125.80037 * 179.83475 * 8 7 6 10 10 C 1.80994 * 100.00103 * 359.69370 * 9 8 7 11 11 C 1.50704 * 109.47345 * 180.02562 * 10 9 8 12 12 O 1.21280 * 119.99747 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00410 * 180.02562 * 11 10 9 14 14 C 1.39236 * 120.00133 * 185.17093 * 13 11 10 15 15 C 1.39485 * 119.83251 * 144.29578 * 14 13 11 16 16 C 1.36377 * 120.16457 * 180.21127 * 15 14 13 17 17 C 1.40869 * 119.82692 * 359.51681 * 16 15 14 18 18 C 1.41155 * 120.16095 * 180.27569 * 17 16 15 19 19 H 1.08006 * 120.00183 * 335.07728 * 18 17 16 20 20 C 1.39897 * 120.00032 * 155.07636 * 18 17 16 21 21 N 1.30868 * 120.00067 * 341.96772 * 20 18 17 22 22 Si 1.86805 * 119.99985 * 161.96669 * 20 18 17 23 23 H 1.48504 * 109.47173 * 94.98317 * 22 20 18 24 24 H 1.48498 * 109.47115 * 214.98027 * 22 20 18 25 25 H 1.48492 * 109.47183 * 334.98303 * 22 20 18 26 26 C 1.40863 * 119.67492 * 0.25720 * 17 16 15 27 27 C 1.36371 * 119.83051 * 359.97438 * 26 17 16 28 28 H 1.08991 * 109.47384 * 269.99110 * 1 2 3 29 29 H 1.09000 * 109.47592 * 29.99836 * 1 2 3 30 30 H 1.09007 * 109.46847 * 149.99734 * 1 2 3 31 31 H 1.08998 * 109.46979 * 299.99188 * 4 3 2 32 32 H 1.09003 * 109.47370 * 59.99497 * 4 3 2 33 33 H 0.96705 * 113.99720 * 179.97438 * 5 4 3 34 34 H 1.07993 * 125.82889 * 179.97438 * 6 3 2 35 35 H 1.09003 * 109.47296 * 59.99965 * 10 9 8 36 36 H 1.09007 * 109.47339 * 299.99761 * 10 9 8 37 37 H 0.97001 * 119.99463 * 5.16372 * 13 11 10 38 38 H 1.08001 * 119.91840 * 0.02562 * 15 14 13 39 39 H 1.08000 * 120.07917 * 179.79780 * 16 15 14 40 40 H 0.97001 * 120.00312 * 179.97438 * 21 20 18 41 41 H 1.08001 * 120.08274 * 180.02562 * 26 17 16 42 42 H 1.08000 * 119.92245 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2840 1.1068 0.0000 4 6 1.8439 2.5481 -0.0007 5 8 2.9933 3.3971 0.0001 6 6 3.5504 0.6573 0.0006 7 7 3.5223 -0.6860 0.0065 8 6 2.2747 -1.0941 0.0004 9 16 1.7392 -2.7727 0.0005 10 6 3.3418 -3.6139 0.0012 11 6 3.1264 -5.1054 0.0007 12 8 2.0001 -5.5554 0.0004 13 7 4.1852 -5.9393 0.0016 14 6 3.9892 -7.3135 -0.1075 15 6 4.9028 -8.0903 -0.8199 16 6 4.7152 -9.4362 -0.9347 17 6 3.6007 -10.0430 -0.3229 18 6 3.4028 -11.4363 -0.4324 19 1 3.8234 -11.9776 -1.2669 20 6 2.6617 -12.1160 0.5402 21 7 2.4532 -11.5641 1.7083 22 14 1.9697 -13.8115 0.1714 23 1 2.9087 -14.8485 0.6697 24 1 0.6563 -13.9677 0.8465 25 1 1.7941 -13.9663 -1.2949 26 6 2.6850 -9.2525 0.3988 27 6 2.8833 -7.9071 0.5009 28 1 -0.3634 -0.0002 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 1.2469 2.7452 -0.8911 32 1 1.2458 2.7458 0.8889 33 1 2.7848 4.3414 -0.0007 34 1 4.4391 1.2710 0.0003 35 1 3.9020 -3.3276 0.8913 36 1 3.9027 -3.3279 -0.8887 37 1 5.0837 -5.5821 0.0782 38 1 5.7593 -7.6243 -1.2842 39 1 5.4217 -10.0359 -1.4893 40 1 1.9390 -12.0352 2.3826 41 1 1.8285 -9.7109 0.8708 42 1 2.1824 -7.2997 1.0543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172830358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:10 Heat of formation + Delta-G solvation = -17.163766 kcal Electronic energy + Delta-G solvation = -25871.424709 eV Core-core repulsion = 21942.920335 eV Total energy + Delta-G solvation = -3928.504375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.93684 -41.23714 -39.07275 -37.74185 -36.25064 -35.12742 -34.79344 -32.04456 -31.60323 -31.31211 -30.18224 -27.94103 -26.97229 -26.55027 -23.37334 -23.02160 -22.82916 -21.50103 -21.01023 -19.27731 -19.08270 -18.29614 -18.19428 -17.92957 -17.20504 -17.05828 -16.61337 -16.53127 -15.77829 -15.47516 -15.43413 -15.23761 -15.04293 -14.87580 -14.62794 -14.33632 -14.13806 -13.93386 -13.76173 -13.63572 -13.62046 -13.21217 -12.89464 -12.80075 -12.77158 -12.40533 -11.81346 -11.73911 -11.53663 -11.40157 -11.21485 -11.14677 -10.87194 -10.66479 -10.63232 -10.24959 -9.45537 -8.90660 -8.62059 -8.44529 -6.28010 -0.02022 0.75158 0.78160 0.93439 1.14831 1.37572 1.41351 1.53765 1.67876 1.75732 1.91979 2.20868 2.27085 2.73697 3.26565 3.60292 3.73633 3.77151 3.92845 3.98972 4.13727 4.25216 4.28405 4.29934 4.44069 4.47363 4.49147 4.57999 4.68948 4.97089 5.09687 5.16974 5.19896 5.28888 5.41315 5.63938 5.67830 5.84424 5.85618 6.05914 6.09767 6.32656 6.59419 6.67956 6.72031 6.92073 6.94452 6.98893 7.27182 8.32167 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.033088 B = 0.001743 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.018045 B =16060.688971 C =16671.865767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.439 5.439 3 C -0.026 4.026 4 C 0.166 3.834 5 O -0.581 6.581 6 C -0.021 4.021 7 N -0.516 5.516 8 C 0.160 3.840 9 S 0.044 5.956 10 C -0.119 4.119 11 C 0.517 3.483 12 O -0.559 6.559 13 N -0.632 5.632 14 C 0.000 4.000 15 C -0.094 4.094 16 C -0.225 4.225 17 C 0.074 3.926 18 C -0.494 4.494 19 H 0.081 0.919 20 C 0.032 3.968 21 N -0.824 5.824 22 Si 0.983 3.017 23 H -0.259 1.259 24 H -0.269 1.269 25 H -0.258 1.258 26 C -0.183 4.183 27 C -0.097 4.097 28 H 0.095 0.905 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.411 0.589 34 H 0.178 0.822 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.420 0.580 38 H 0.135 0.865 39 H 0.111 0.889 40 H 0.288 0.712 41 H 0.096 0.904 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.036 27.882 -2.115 28.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.126 5.126 3 C -0.143 4.143 4 C 0.087 3.913 5 O -0.391 6.391 6 C -0.171 4.171 7 N -0.239 5.239 8 C -0.209 4.209 9 S 0.273 5.727 10 C -0.270 4.270 11 C 0.304 3.696 12 O -0.438 6.438 13 N -0.278 5.278 14 C -0.093 4.093 15 C -0.114 4.114 16 C -0.245 4.245 17 C 0.072 3.928 18 C -0.523 4.523 19 H 0.099 0.901 20 C -0.183 4.183 21 N -0.450 5.450 22 Si 0.803 3.197 23 H -0.184 1.184 24 H -0.193 1.193 25 H -0.181 1.181 26 C -0.203 4.203 27 C -0.117 4.117 28 H 0.114 0.886 29 H 0.138 0.862 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.263 0.737 34 H 0.195 0.805 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.258 0.742 38 H 0.153 0.847 39 H 0.129 0.871 40 H 0.099 0.901 41 H 0.114 0.886 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.183 26.032 -1.883 26.433 hybrid contribution 0.464 0.742 0.219 0.902 sum -3.718 26.774 -1.664 27.082 Atomic orbital electron populations 1.22483 0.73731 1.06515 1.05508 1.45308 1.08527 1.03782 1.55011 1.21465 0.90922 0.90689 1.11265 1.20059 0.87217 0.81840 1.02148 1.86366 1.32459 1.22443 1.97832 1.22272 0.97535 0.89977 1.07313 1.70712 1.17854 1.13259 1.22049 1.25462 0.88994 0.95624 1.10868 1.86105 1.07282 0.85743 1.93574 1.23455 1.00471 0.92499 1.10618 1.20160 0.84889 0.88014 0.76558 1.90727 1.24470 1.78170 1.50449 1.42651 1.09874 1.04055 1.71172 1.17207 1.01310 0.82466 1.08323 1.20410 0.99196 0.93646 0.98177 1.20811 0.99364 0.94912 1.09395 1.18029 0.90259 0.94024 0.90509 1.19834 1.30593 0.93367 1.08490 0.90080 1.26823 0.93792 1.04358 0.93308 1.69911 1.30512 1.40466 1.04093 0.85186 0.78295 0.76385 0.79823 1.18399 1.19345 1.18126 1.20869 1.00819 0.92537 1.06069 1.20583 0.97705 0.94385 0.99041 0.88619 0.86238 0.89147 0.90070 0.90180 0.73712 0.80467 0.84453 0.84361 0.74190 0.84708 0.87135 0.90148 0.88564 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.61 10.84 127.77 1.38 1.99 16 2 N -0.44 -8.49 3.20 -532.70 -1.71 -10.20 16 3 C -0.03 -0.49 6.94 40.76 0.28 -0.20 16 4 C 0.17 1.50 7.19 71.23 0.51 2.01 16 5 O -0.58 -5.72 12.97 -148.98 -1.93 -7.65 16 6 C -0.02 -0.51 11.20 83.42 0.93 0.42 16 7 N -0.52 -14.22 10.60 -196.47 -2.08 -16.31 16 8 C 0.16 4.06 7.96 179.69 1.43 5.49 16 9 S 0.04 1.18 20.77 -56.49 -1.17 0.00 16 10 C -0.12 -3.04 5.68 71.24 0.40 -2.64 16 11 C 0.52 17.66 7.68 87.66 0.67 18.33 16 12 O -0.56 -24.12 13.30 -3.03 -0.04 -24.16 16 13 N -0.63 -21.18 5.30 -303.11 -1.61 -22.79 16 14 C 0.00 0.02 6.30 38.57 0.24 0.26 16 15 C -0.09 -3.98 9.90 22.14 0.22 -3.76 16 16 C -0.22 -10.85 9.74 22.48 0.22 -10.63 16 17 C 0.07 4.11 5.57 -21.28 -0.12 3.99 16 18 C -0.49 -27.00 9.03 23.39 0.21 -26.79 16 19 H 0.08 4.21 7.91 -2.91 -0.02 4.19 16 20 C 0.03 1.66 5.13 85.24 0.44 2.10 16 21 N -0.82 -44.51 10.99 21.82 0.24 -44.27 16 22 Si 0.98 38.91 29.60 68.60 2.03 40.94 16 23 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 24 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 25 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 26 C -0.18 -10.28 8.64 22.48 0.19 -10.08 16 27 C -0.10 -4.98 8.61 22.13 0.19 -4.79 16 28 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.12 0.46 7.91 -2.39 -0.02 0.44 16 30 H 0.09 1.05 7.74 -2.38 -0.02 1.03 16 31 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.41 -0.39 9.12 -74.05 -0.68 -1.07 16 34 H 0.18 3.91 7.85 -2.91 -0.02 3.88 16 35 H 0.14 3.10 8.14 -2.39 -0.02 3.08 16 36 H 0.14 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.42 10.34 8.82 -92.71 -0.82 9.52 16 38 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 39 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 40 H 0.29 14.07 8.30 -92.71 -0.77 13.30 16 41 H 0.10 5.73 6.19 -2.91 -0.02 5.71 16 42 H 0.10 5.13 6.24 -2.91 -0.02 5.11 16 Total: -1.00 -78.02 375.35 0.54 -77.48 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: -0.41 Total: 31.26 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 7.22 Total: -24.30 kcal Atomic # 7 Polarization: -88.41 SS G_CDS: -5.16 Total: -93.57 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -1.97 Total: -31.81 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -1.17 Total: 0.00 kcal Total: -78.02 0.54 -77.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172830358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.318 kcal (2) G-P(sol) polarization free energy of solvation -78.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds