Wall clock time and date at job start Wed Apr 1 2020 04:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46494 * 120.00056 * 2 1 4 4 C 1.52997 * 109.47333 * 270.00045 * 3 2 1 5 5 H 1.09002 * 109.47056 * 59.99693 * 4 3 2 6 6 O 1.42902 * 109.47044 * 300.00082 * 4 3 2 7 7 C 1.53000 * 109.47541 * 179.97438 * 4 3 2 8 8 F 1.39905 * 109.46731 * 60.00038 * 7 4 3 9 9 F 1.39897 * 109.47473 * 179.97438 * 7 4 3 10 10 F 1.39902 * 109.47013 * 300.00350 * 7 4 3 11 11 C 1.34780 * 120.00026 * 179.97438 * 2 1 3 12 12 O 1.21282 * 120.00129 * 179.97438 * 11 2 1 13 13 C 1.50702 * 119.99933 * 0.02562 * 11 2 1 14 14 C 1.50701 * 109.47242 * 179.97438 * 13 11 2 15 15 C 1.38299 * 119.93217 * 269.72899 * 14 13 11 16 16 C 1.38093 * 120.06953 * 179.72477 * 15 14 13 17 17 C 1.38883 * 119.92808 * 0.56550 * 16 15 14 18 18 O 1.35754 * 120.06438 * 179.68623 * 17 16 15 19 19 C 1.34826 * 116.99724 * 174.49160 * 18 17 16 20 20 H 1.07998 * 120.00100 * 5.04739 * 19 18 17 21 21 C 1.38654 * 119.99970 * 185.05457 * 19 18 17 22 22 N 1.31557 * 120.00012 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99959 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47303 * 60.00249 * 23 21 19 25 25 H 1.48499 * 109.46956 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47359 * 299.99968 * 23 21 19 27 27 C 1.38871 * 119.86468 * 359.70509 * 17 16 15 28 28 C 1.38101 * 119.93230 * 0.02562 * 27 17 16 29 29 H 1.09004 * 109.47111 * 269.99873 * 1 2 3 30 30 H 1.08994 * 109.46958 * 29.99951 * 1 2 3 31 31 H 1.08996 * 109.47149 * 150.00111 * 1 2 3 32 32 H 1.09001 * 109.46952 * 30.00176 * 3 2 1 33 33 H 1.09002 * 109.47301 * 149.99888 * 3 2 1 34 34 H 0.96699 * 113.99654 * 299.99993 * 6 4 3 35 35 H 1.09002 * 109.47056 * 59.99417 * 13 11 2 36 36 H 1.09001 * 109.46884 * 299.99904 * 13 11 2 37 37 H 1.08005 * 119.96050 * 359.97425 * 15 14 13 38 38 H 1.07999 * 120.03730 * 180.26989 * 16 15 14 39 39 H 0.97002 * 120.00021 * 179.97438 * 22 21 19 40 40 H 1.08002 * 120.03853 * 179.97438 * 27 17 16 41 41 H 1.07997 * 119.96732 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 1 1.5001 1.8407 -1.9563 6 8 3.2248 0.7145 -2.1161 7 6 3.2169 3.0357 -1.4425 8 9 4.4394 2.8689 -0.7828 9 9 3.4506 3.4393 -2.7615 10 9 2.4604 4.0104 -0.7831 11 6 2.1389 -1.1672 0.0005 12 8 3.3517 -1.1672 0.0001 13 6 1.3854 -2.4723 0.0005 14 6 2.3646 -3.6178 0.0005 15 6 2.8088 -4.1460 -1.1980 16 6 3.7104 -5.1919 -1.2013 17 6 4.1623 -5.7211 0.0006 18 8 5.0438 -6.7535 0.0005 19 6 5.5290 -7.1441 1.1963 20 1 5.1528 -6.6961 2.1041 21 6 6.5109 -8.1209 1.2605 22 7 6.9688 -8.6669 0.1546 23 14 7.1836 -8.6616 2.9172 24 1 6.0790 -9.2085 3.7454 25 1 8.2153 -9.7102 2.7141 26 1 7.7910 -7.4964 3.6090 27 6 3.7102 -5.1922 1.2024 28 6 2.8127 -4.1426 1.1992 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6084 2.0283 0.5139 33 1 3.1499 1.1384 0.5139 34 1 4.0872 0.5460 -1.7126 35 1 0.7590 -2.5302 -0.8897 36 1 0.7584 -2.5298 0.8903 37 1 2.4530 -3.7374 -2.1323 38 1 4.0602 -5.6011 -2.1376 39 1 7.6561 -9.3500 0.1995 40 1 4.0594 -5.6018 2.1388 41 1 2.4604 -3.7311 2.1335 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181555917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:29 Heat of formation + Delta-G solvation = -234.790770 kcal Electronic energy + Delta-G solvation = -30359.717285 eV Core-core repulsion = 25404.873532 eV Total energy + Delta-G solvation = -4954.843752 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.52317 -48.04895 -47.98538 -40.26780 -38.90873 -37.71716 -36.45738 -35.48713 -32.50143 -31.78553 -30.70736 -30.11248 -27.59461 -27.02533 -25.59675 -24.81127 -22.76872 -21.93752 -20.87251 -19.58992 -18.99928 -18.76561 -18.62176 -17.94682 -17.21004 -16.98531 -16.71139 -16.14353 -15.58633 -15.20012 -14.84051 -14.65864 -14.61035 -14.51489 -14.42685 -14.21656 -14.13610 -14.10026 -13.75905 -13.63026 -13.51401 -13.34958 -13.21643 -12.81570 -12.66730 -12.48504 -12.27635 -12.02300 -11.82570 -11.50513 -11.23093 -11.00161 -10.81579 -10.71635 -10.60888 -10.41118 -9.78262 -9.29582 -8.97092 -8.78649 -8.11462 -7.13134 -6.41390 -4.00043 2.06939 2.28788 2.31000 2.65417 2.77571 3.15132 3.16997 3.19367 3.33637 3.40912 3.52877 3.98376 3.99849 4.26718 4.27948 4.53591 4.70323 4.81185 4.92889 5.02280 5.11726 5.19776 5.26989 5.32196 5.34189 5.36403 5.66860 5.75010 5.88496 6.08925 6.25327 6.45472 6.73452 6.94080 6.97503 7.07249 7.15019 7.28177 7.40095 7.48559 7.87434 8.03771 8.16715 9.04210 9.74962 10.76702 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.017736 B = 0.002198 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.341939 B =12735.538386 C =13255.896337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.620 5.620 3 C 0.082 3.918 4 C 0.057 3.943 5 H 0.139 0.861 6 O -0.521 6.521 7 C 0.420 3.580 8 F -0.179 7.179 9 F -0.176 7.176 10 F -0.182 7.182 11 C 0.518 3.482 12 O -0.513 6.513 13 C -0.076 4.076 14 C -0.172 4.172 15 C -0.057 4.057 16 C -0.191 4.191 17 C 0.157 3.843 18 O -0.178 6.178 19 C -0.391 4.391 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.864 5.864 23 Si 0.941 3.059 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.233 4.233 28 C -0.056 4.056 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.395 0.605 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.270 0.730 40 H 0.126 0.874 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.124 22.510 -0.497 27.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.355 5.355 3 C -0.043 4.043 4 C -0.007 4.007 5 H 0.156 0.844 6 O -0.328 6.328 7 C 0.365 3.635 8 F -0.161 7.161 9 F -0.157 7.157 10 F -0.163 7.163 11 C 0.307 3.693 12 O -0.386 6.386 13 C -0.115 4.115 14 C -0.173 4.173 15 C -0.076 4.076 16 C -0.211 4.211 17 C 0.103 3.897 18 O -0.081 6.081 19 C -0.468 4.468 20 H 0.108 0.892 21 C -0.165 4.165 22 N -0.499 5.499 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.252 4.252 28 C -0.075 4.075 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.246 0.754 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.126 0.874 38 H 0.134 0.866 39 H 0.080 0.920 40 H 0.144 0.856 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.666 22.144 -1.121 26.584 hybrid contribution 0.850 0.267 1.216 1.507 sum -13.816 22.411 0.095 26.327 Atomic orbital electron populations 1.21856 0.79064 1.03525 1.02166 1.47765 1.06914 1.04911 1.75959 1.22013 1.00671 0.87587 0.94028 1.23644 0.95818 0.83351 0.97865 0.84394 1.86680 1.34616 1.55985 1.55483 1.21702 0.79071 0.88781 0.73943 1.93214 1.46348 1.95486 1.81052 1.93220 1.94769 1.91905 1.35801 1.93187 1.75760 1.66213 1.81186 1.21118 0.88434 0.84902 0.74809 1.90700 1.13970 1.86796 1.47138 1.20422 0.97488 0.89941 1.03672 1.18625 1.04874 1.00101 0.93718 1.20395 0.95849 0.95016 0.96310 1.20157 1.03760 1.00938 0.96199 1.19384 0.89631 0.87382 0.93279 1.83977 1.50530 1.40701 1.32924 1.21275 1.20646 1.21720 0.83120 0.89150 1.25281 0.95863 0.96130 0.99236 1.70031 1.27335 1.25469 1.27020 0.85791 0.78809 0.78665 0.80221 1.19536 1.20295 1.19501 1.21093 1.03995 1.01738 0.98387 1.20492 0.95788 0.95079 0.96101 0.92237 0.91231 0.90282 0.88448 0.88091 0.75415 0.88884 0.89063 0.87372 0.86570 0.92000 0.85641 0.87932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.37 10.24 59.85 0.61 0.98 16 2 N -0.62 -5.38 2.83 -181.58 -0.51 -5.89 16 3 C 0.08 0.63 4.90 -4.05 -0.02 0.61 16 4 C 0.06 0.44 3.24 -26.73 -0.09 0.36 16 5 H 0.14 0.82 8.14 -51.93 -0.42 0.39 16 6 O -0.52 -5.67 12.09 -43.97 -0.53 -6.20 16 7 C 0.42 3.55 2.85 37.16 0.11 3.66 16 8 F -0.18 -1.75 16.42 2.25 0.04 -1.72 16 9 F -0.18 -1.75 17.26 2.25 0.04 -1.71 16 10 F -0.18 -1.43 16.80 2.25 0.04 -1.39 16 11 C 0.52 6.57 7.18 -10.98 -0.08 6.49 16 12 O -0.51 -8.63 14.40 -3.18 -0.05 -8.67 16 13 C -0.08 -0.90 4.38 -29.03 -0.13 -1.02 16 14 C -0.17 -2.92 4.38 -104.57 -0.46 -3.37 16 15 C -0.06 -1.05 9.69 -39.61 -0.38 -1.43 16 16 C -0.19 -4.17 9.99 -39.40 -0.39 -4.56 16 17 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 18 O -0.18 -5.19 9.76 0.05 0.00 -5.18 16 19 C -0.39 -11.13 9.49 30.89 0.29 -10.84 16 20 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16 21 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -25.70 13.67 55.48 0.76 -24.94 16 23 Si 0.94 20.81 29.55 -169.99 -5.02 15.79 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 27 C -0.23 -5.19 9.17 -39.40 -0.36 -5.55 16 28 C -0.06 -1.05 9.69 -39.61 -0.38 -1.43 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.20 8.07 -51.93 -0.42 -0.22 16 31 H 0.08 0.34 6.44 -51.93 -0.33 0.01 16 32 H 0.10 0.49 7.73 -51.93 -0.40 0.09 16 33 H 0.10 0.96 7.08 -51.93 -0.37 0.59 16 34 H 0.39 4.24 8.10 45.56 0.37 4.61 16 35 H 0.09 0.89 7.34 -51.93 -0.38 0.51 16 36 H 0.09 0.87 8.05 -51.93 -0.42 0.45 16 37 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 38 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 39 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.13 2.79 5.64 -52.49 -0.30 2.50 16 41 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 363.87 15.07 5.48 5.48 Total: -1.00 -34.72 363.87 -5.17 -39.89 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -3.77 Total: 6.02 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -1.64 Total: -11.49 kcal Atomic # 7 Polarization: -31.07 SS G_CDS: 0.25 Total: -30.83 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.58 Total: -20.05 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.11 Total: -4.81 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.72 -5.17 -39.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181555917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.902 kcal (2) G-P(sol) polarization free energy of solvation -34.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds