Wall clock time and date at job start Wed Apr 1 2020 04:15:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.46494 * 120.00056 * 2 1
4 4 C 1.52997 * 109.47333 * 270.00045 * 3 2 1
5 5 H 1.09002 * 109.47056 * 59.99693 * 4 3 2
6 6 O 1.42902 * 109.47044 * 300.00082 * 4 3 2
7 7 C 1.53000 * 109.47541 * 179.97438 * 4 3 2
8 8 F 1.39905 * 109.46731 * 60.00038 * 7 4 3
9 9 F 1.39897 * 109.47473 * 179.97438 * 7 4 3
10 10 F 1.39902 * 109.47013 * 300.00350 * 7 4 3
11 11 C 1.34780 * 120.00026 * 179.97438 * 2 1 3
12 12 O 1.21282 * 120.00129 * 179.97438 * 11 2 1
13 13 C 1.50702 * 119.99933 * 0.02562 * 11 2 1
14 14 C 1.50701 * 109.47242 * 179.97438 * 13 11 2
15 15 C 1.38299 * 119.93217 * 269.72899 * 14 13 11
16 16 C 1.38093 * 120.06953 * 179.72477 * 15 14 13
17 17 C 1.38883 * 119.92808 * 0.56550 * 16 15 14
18 18 O 1.35754 * 120.06438 * 179.68623 * 17 16 15
19 19 C 1.34826 * 116.99724 * 174.49160 * 18 17 16
20 20 H 1.07998 * 120.00100 * 5.04739 * 19 18 17
21 21 C 1.38654 * 119.99970 * 185.05457 * 19 18 17
22 22 N 1.31557 * 120.00012 * 359.97438 * 21 19 18
23 23 Si 1.86803 * 119.99959 * 179.97438 * 21 19 18
24 24 H 1.48500 * 109.47303 * 60.00249 * 23 21 19
25 25 H 1.48499 * 109.46956 * 179.97438 * 23 21 19
26 26 H 1.48498 * 109.47359 * 299.99968 * 23 21 19
27 27 C 1.38871 * 119.86468 * 359.70509 * 17 16 15
28 28 C 1.38101 * 119.93230 * 0.02562 * 27 17 16
29 29 H 1.09004 * 109.47111 * 269.99873 * 1 2 3
30 30 H 1.08994 * 109.46958 * 29.99951 * 1 2 3
31 31 H 1.08996 * 109.47149 * 150.00111 * 1 2 3
32 32 H 1.09001 * 109.46952 * 30.00176 * 3 2 1
33 33 H 1.09002 * 109.47301 * 149.99888 * 3 2 1
34 34 H 0.96699 * 113.99654 * 299.99993 * 6 4 3
35 35 H 1.09002 * 109.47056 * 59.99417 * 13 11 2
36 36 H 1.09001 * 109.46884 * 299.99904 * 13 11 2
37 37 H 1.08005 * 119.96050 * 359.97425 * 15 14 13
38 38 H 1.07999 * 120.03730 * 180.26989 * 16 15 14
39 39 H 0.97002 * 120.00021 * 179.97438 * 22 21 19
40 40 H 1.08002 * 120.03853 * 179.97438 * 27 17 16
41 41 H 1.07997 * 119.96732 * 179.97438 * 28 27 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4525 1.7104 -1.4424
5 1 1.5001 1.8407 -1.9563
6 8 3.2248 0.7145 -2.1161
7 6 3.2169 3.0357 -1.4425
8 9 4.4394 2.8689 -0.7828
9 9 3.4506 3.4393 -2.7615
10 9 2.4604 4.0104 -0.7831
11 6 2.1389 -1.1672 0.0005
12 8 3.3517 -1.1672 0.0001
13 6 1.3854 -2.4723 0.0005
14 6 2.3646 -3.6178 0.0005
15 6 2.8088 -4.1460 -1.1980
16 6 3.7104 -5.1919 -1.2013
17 6 4.1623 -5.7211 0.0006
18 8 5.0438 -6.7535 0.0005
19 6 5.5290 -7.1441 1.1963
20 1 5.1528 -6.6961 2.1041
21 6 6.5109 -8.1209 1.2605
22 7 6.9688 -8.6669 0.1546
23 14 7.1836 -8.6616 2.9172
24 1 6.0790 -9.2085 3.7454
25 1 8.2153 -9.7102 2.7141
26 1 7.7910 -7.4964 3.6090
27 6 3.7102 -5.1922 1.2024
28 6 2.8127 -4.1426 1.1992
29 1 -0.3633 0.0000 1.0277
30 1 -0.3633 0.8899 -0.5138
31 1 -0.3633 -0.8900 -0.5138
32 1 1.6084 2.0283 0.5139
33 1 3.1499 1.1384 0.5139
34 1 4.0872 0.5460 -1.7126
35 1 0.7590 -2.5302 -0.8897
36 1 0.7584 -2.5298 0.8903
37 1 2.4530 -3.7374 -2.1323
38 1 4.0602 -5.6011 -2.1376
39 1 7.6561 -9.3500 0.1995
40 1 4.0594 -5.6018 2.1388
41 1 2.4604 -3.7311 2.1335
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000181555917.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:15:29
Heat of formation + Delta-G solvation = -234.790770 kcal
Electronic energy + Delta-G solvation = -30359.717285 eV
Core-core repulsion = 25404.873532 eV
Total energy + Delta-G solvation = -4954.843752 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.118 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-50.52317 -48.04895 -47.98538 -40.26780 -38.90873 -37.71716 -36.45738 -35.48713
-32.50143 -31.78553 -30.70736 -30.11248 -27.59461 -27.02533 -25.59675 -24.81127
-22.76872 -21.93752 -20.87251 -19.58992 -18.99928 -18.76561 -18.62176 -17.94682
-17.21004 -16.98531 -16.71139 -16.14353 -15.58633 -15.20012 -14.84051 -14.65864
-14.61035 -14.51489 -14.42685 -14.21656 -14.13610 -14.10026 -13.75905 -13.63026
-13.51401 -13.34958 -13.21643 -12.81570 -12.66730 -12.48504 -12.27635 -12.02300
-11.82570 -11.50513 -11.23093 -11.00161 -10.81579 -10.71635 -10.60888 -10.41118
-9.78262 -9.29582 -8.97092 -8.78649 -8.11462 -7.13134 -6.41390 -4.00043
2.06939 2.28788 2.31000 2.65417 2.77571 3.15132 3.16997 3.19367
3.33637 3.40912 3.52877 3.98376 3.99849 4.26718 4.27948 4.53591
4.70323 4.81185 4.92889 5.02280 5.11726 5.19776 5.26989 5.32196
5.34189 5.36403 5.66860 5.75010 5.88496 6.08925 6.25327 6.45472
6.73452 6.94080 6.97503 7.07249 7.15019 7.28177 7.40095 7.48559
7.87434 8.03771 8.16715 9.04210 9.74962 10.76702
Molecular weight = 347.12amu
Principal moments of inertia in cm(-1)
A = 0.017736 B = 0.002198 C = 0.002112
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1578.341939 B =12735.538386 C =13255.896337
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.077 3.923
2 N -0.620 5.620
3 C 0.082 3.918
4 C 0.057 3.943
5 H 0.139 0.861
6 O -0.521 6.521
7 C 0.420 3.580
8 F -0.179 7.179
9 F -0.176 7.176
10 F -0.182 7.182
11 C 0.518 3.482
12 O -0.513 6.513
13 C -0.076 4.076
14 C -0.172 4.172
15 C -0.057 4.057
16 C -0.191 4.191
17 C 0.157 3.843
18 O -0.178 6.178
19 C -0.391 4.391
20 H 0.091 0.909
21 C 0.039 3.961
22 N -0.864 5.864
23 Si 0.941 3.059
24 H -0.270 1.270
25 H -0.278 1.278
26 H -0.270 1.270
27 C -0.233 4.233
28 C -0.056 4.056
29 H 0.059 0.941
30 H 0.069 0.931
31 H 0.079 0.921
32 H 0.097 0.903
33 H 0.101 0.899
34 H 0.395 0.605
35 H 0.093 0.907
36 H 0.091 0.909
37 H 0.108 0.892
38 H 0.116 0.884
39 H 0.270 0.730
40 H 0.126 0.874
41 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.124 22.510 -0.497 27.124
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 N -0.355 5.355
3 C -0.043 4.043
4 C -0.007 4.007
5 H 0.156 0.844
6 O -0.328 6.328
7 C 0.365 3.635
8 F -0.161 7.161
9 F -0.157 7.157
10 F -0.163 7.163
11 C 0.307 3.693
12 O -0.386 6.386
13 C -0.115 4.115
14 C -0.173 4.173
15 C -0.076 4.076
16 C -0.211 4.211
17 C 0.103 3.897
18 O -0.081 6.081
19 C -0.468 4.468
20 H 0.108 0.892
21 C -0.165 4.165
22 N -0.499 5.499
23 Si 0.765 3.235
24 H -0.195 1.195
25 H -0.203 1.203
26 H -0.195 1.195
27 C -0.252 4.252
28 C -0.075 4.075
29 H 0.078 0.922
30 H 0.088 0.912
31 H 0.097 0.903
32 H 0.116 0.884
33 H 0.119 0.881
34 H 0.246 0.754
35 H 0.111 0.889
36 H 0.109 0.891
37 H 0.126 0.874
38 H 0.134 0.866
39 H 0.080 0.920
40 H 0.144 0.856
41 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -14.666 22.144 -1.121 26.584
hybrid contribution 0.850 0.267 1.216 1.507
sum -13.816 22.411 0.095 26.327
Atomic orbital electron populations
1.21856 0.79064 1.03525 1.02166 1.47765 1.06914 1.04911 1.75959
1.22013 1.00671 0.87587 0.94028 1.23644 0.95818 0.83351 0.97865
0.84394 1.86680 1.34616 1.55985 1.55483 1.21702 0.79071 0.88781
0.73943 1.93214 1.46348 1.95486 1.81052 1.93220 1.94769 1.91905
1.35801 1.93187 1.75760 1.66213 1.81186 1.21118 0.88434 0.84902
0.74809 1.90700 1.13970 1.86796 1.47138 1.20422 0.97488 0.89941
1.03672 1.18625 1.04874 1.00101 0.93718 1.20395 0.95849 0.95016
0.96310 1.20157 1.03760 1.00938 0.96199 1.19384 0.89631 0.87382
0.93279 1.83977 1.50530 1.40701 1.32924 1.21275 1.20646 1.21720
0.83120 0.89150 1.25281 0.95863 0.96130 0.99236 1.70031 1.27335
1.25469 1.27020 0.85791 0.78809 0.78665 0.80221 1.19536 1.20295
1.19501 1.21093 1.03995 1.01738 0.98387 1.20492 0.95788 0.95079
0.96101 0.92237 0.91231 0.90282 0.88448 0.88091 0.75415 0.88884
0.89063 0.87372 0.86570 0.92000 0.85641 0.87932
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.37 10.24 59.85 0.61 0.98 16
2 N -0.62 -5.38 2.83 -181.58 -0.51 -5.89 16
3 C 0.08 0.63 4.90 -4.05 -0.02 0.61 16
4 C 0.06 0.44 3.24 -26.73 -0.09 0.36 16
5 H 0.14 0.82 8.14 -51.93 -0.42 0.39 16
6 O -0.52 -5.67 12.09 -43.97 -0.53 -6.20 16
7 C 0.42 3.55 2.85 37.16 0.11 3.66 16
8 F -0.18 -1.75 16.42 2.25 0.04 -1.72 16
9 F -0.18 -1.75 17.26 2.25 0.04 -1.71 16
10 F -0.18 -1.43 16.80 2.25 0.04 -1.39 16
11 C 0.52 6.57 7.18 -10.98 -0.08 6.49 16
12 O -0.51 -8.63 14.40 -3.18 -0.05 -8.67 16
13 C -0.08 -0.90 4.38 -29.03 -0.13 -1.02 16
14 C -0.17 -2.92 4.38 -104.57 -0.46 -3.37 16
15 C -0.06 -1.05 9.69 -39.61 -0.38 -1.43 16
16 C -0.19 -4.17 9.99 -39.40 -0.39 -4.56 16
17 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16
18 O -0.18 -5.19 9.76 0.05 0.00 -5.18 16
19 C -0.39 -11.13 9.49 30.89 0.29 -10.84 16
20 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16
21 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16
22 N -0.86 -25.70 13.67 55.48 0.76 -24.94 16
23 Si 0.94 20.81 29.55 -169.99 -5.02 15.79 16
24 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16
25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16
26 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16
27 C -0.23 -5.19 9.17 -39.40 -0.36 -5.55 16
28 C -0.06 -1.05 9.69 -39.61 -0.38 -1.43 16
29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16
30 H 0.07 0.20 8.07 -51.93 -0.42 -0.22 16
31 H 0.08 0.34 6.44 -51.93 -0.33 0.01 16
32 H 0.10 0.49 7.73 -51.93 -0.40 0.09 16
33 H 0.10 0.96 7.08 -51.93 -0.37 0.59 16
34 H 0.39 4.24 8.10 45.56 0.37 4.61 16
35 H 0.09 0.89 7.34 -51.93 -0.38 0.51 16
36 H 0.09 0.87 8.05 -51.93 -0.42 0.45 16
37 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16
38 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16
39 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16
40 H 0.13 2.79 5.64 -52.49 -0.30 2.50 16
41 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16
LS Contribution 363.87 15.07 5.48 5.48
Total: -1.00 -34.72 363.87 -5.17 -39.89
By element:
Atomic # 1 Polarization: 9.79 SS G_CDS: -3.77 Total: 6.02 kcal
Atomic # 6 Polarization: -9.85 SS G_CDS: -1.64 Total: -11.49 kcal
Atomic # 7 Polarization: -31.07 SS G_CDS: 0.25 Total: -30.83 kcal
Atomic # 8 Polarization: -19.48 SS G_CDS: -0.58 Total: -20.05 kcal
Atomic # 9 Polarization: -4.93 SS G_CDS: 0.11 Total: -4.81 kcal
Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -34.72 -5.17 -39.89 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000181555917.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -194.902 kcal
(2) G-P(sol) polarization free energy of solvation -34.723 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.624 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.166 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.889 kcal
(6) G-S(sol) free energy of system = (1) + (5) -234.791 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds