Wall clock time and date at job start Wed Apr 1 2020 04:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46494 * 120.00056 * 2 1 4 4 C 1.52997 * 109.47333 * 270.00045 * 3 2 1 5 5 H 1.09002 * 109.47056 * 59.99693 * 4 3 2 6 6 O 1.42902 * 109.47044 * 300.00082 * 4 3 2 7 7 C 1.53000 * 109.47541 * 179.97438 * 4 3 2 8 8 F 1.39905 * 109.46731 * 60.00038 * 7 4 3 9 9 F 1.39897 * 109.47473 * 179.97438 * 7 4 3 10 10 F 1.39902 * 109.47013 * 300.00350 * 7 4 3 11 11 C 1.34780 * 120.00026 * 179.97438 * 2 1 3 12 12 O 1.21282 * 120.00129 * 179.97438 * 11 2 1 13 13 C 1.50702 * 119.99933 * 0.02562 * 11 2 1 14 14 C 1.50701 * 109.47242 * 179.97438 * 13 11 2 15 15 C 1.38299 * 119.93217 * 269.72899 * 14 13 11 16 16 C 1.38093 * 120.06953 * 179.72477 * 15 14 13 17 17 C 1.38883 * 119.92808 * 0.56550 * 16 15 14 18 18 O 1.35754 * 120.06438 * 179.68623 * 17 16 15 19 19 C 1.34826 * 116.99724 * 174.49160 * 18 17 16 20 20 H 1.07998 * 120.00100 * 5.04739 * 19 18 17 21 21 C 1.38654 * 119.99970 * 185.05457 * 19 18 17 22 22 N 1.31557 * 120.00012 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99959 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47303 * 60.00249 * 23 21 19 25 25 H 1.48499 * 109.46956 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47359 * 299.99968 * 23 21 19 27 27 C 1.38871 * 119.86468 * 359.70509 * 17 16 15 28 28 C 1.38101 * 119.93230 * 0.02562 * 27 17 16 29 29 H 1.09004 * 109.47111 * 269.99873 * 1 2 3 30 30 H 1.08994 * 109.46958 * 29.99951 * 1 2 3 31 31 H 1.08996 * 109.47149 * 150.00111 * 1 2 3 32 32 H 1.09001 * 109.46952 * 30.00176 * 3 2 1 33 33 H 1.09002 * 109.47301 * 149.99888 * 3 2 1 34 34 H 0.96699 * 113.99654 * 299.99993 * 6 4 3 35 35 H 1.09002 * 109.47056 * 59.99417 * 13 11 2 36 36 H 1.09001 * 109.46884 * 299.99904 * 13 11 2 37 37 H 1.08005 * 119.96050 * 359.97425 * 15 14 13 38 38 H 1.07999 * 120.03730 * 180.26989 * 16 15 14 39 39 H 0.97002 * 120.00021 * 179.97438 * 22 21 19 40 40 H 1.08002 * 120.03853 * 179.97438 * 27 17 16 41 41 H 1.07997 * 119.96732 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 1 1.5001 1.8407 -1.9563 6 8 3.2248 0.7145 -2.1161 7 6 3.2169 3.0357 -1.4425 8 9 4.4394 2.8689 -0.7828 9 9 3.4506 3.4393 -2.7615 10 9 2.4604 4.0104 -0.7831 11 6 2.1389 -1.1672 0.0005 12 8 3.3517 -1.1672 0.0001 13 6 1.3854 -2.4723 0.0005 14 6 2.3646 -3.6178 0.0005 15 6 2.8088 -4.1460 -1.1980 16 6 3.7104 -5.1919 -1.2013 17 6 4.1623 -5.7211 0.0006 18 8 5.0438 -6.7535 0.0005 19 6 5.5290 -7.1441 1.1963 20 1 5.1528 -6.6961 2.1041 21 6 6.5109 -8.1209 1.2605 22 7 6.9688 -8.6669 0.1546 23 14 7.1836 -8.6616 2.9172 24 1 6.0790 -9.2085 3.7454 25 1 8.2153 -9.7102 2.7141 26 1 7.7910 -7.4964 3.6090 27 6 3.7102 -5.1922 1.2024 28 6 2.8127 -4.1426 1.1992 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6084 2.0283 0.5139 33 1 3.1499 1.1384 0.5139 34 1 4.0872 0.5460 -1.7126 35 1 0.7590 -2.5302 -0.8897 36 1 0.7584 -2.5298 0.8903 37 1 2.4530 -3.7374 -2.1323 38 1 4.0602 -5.6011 -2.1376 39 1 7.6561 -9.3500 0.1995 40 1 4.0594 -5.6018 2.1388 41 1 2.4604 -3.7311 2.1335 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181555917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:28 Heat of formation + Delta-G solvation = -259.425585 kcal Electronic energy + Delta-G solvation = -30360.785530 eV Core-core repulsion = 25404.873532 eV Total energy + Delta-G solvation = -4955.911998 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.21816 -48.74000 -48.70075 -41.24289 -40.52898 -38.69472 -37.99455 -36.28415 -34.38897 -33.03824 -31.77580 -31.60882 -28.53929 -27.91325 -27.21504 -25.95939 -23.61243 -23.51458 -22.30627 -20.48695 -19.82234 -19.68495 -19.50912 -19.32753 -18.80923 -18.01666 -17.48474 -17.02929 -16.48654 -16.31019 -16.25058 -15.88350 -15.62970 -15.53921 -15.48067 -15.33808 -15.13159 -15.06952 -14.84812 -14.83668 -14.48179 -14.40037 -14.29922 -14.08375 -13.81110 -13.57028 -13.22900 -12.93262 -12.89713 -12.78573 -12.62107 -12.42986 -12.27728 -12.17606 -12.12092 -11.71743 -11.16309 -10.86475 -10.69578 -9.73958 -9.65478 -8.87505 -8.46360 -6.14544 0.64065 0.69568 1.34048 1.42526 1.46086 1.50819 1.77914 2.05186 2.18413 2.67050 2.71679 2.86083 2.87640 3.17988 3.34797 3.54632 3.63458 3.70867 3.90725 4.06805 4.09242 4.21391 4.37904 4.39144 4.50519 4.59271 4.63153 4.71204 4.81077 4.87165 5.06506 5.12655 5.15861 5.32980 5.47945 5.59690 5.73797 5.80706 6.04048 6.19401 6.24111 6.41517 6.98157 7.29389 7.80191 8.77042 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.017736 B = 0.002198 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.341939 B =12735.538386 C =13255.896337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.610 5.610 3 C 0.081 3.919 4 C 0.062 3.938 5 H 0.164 0.836 6 O -0.539 6.539 7 C 0.423 3.577 8 F -0.190 7.190 9 F -0.186 7.186 10 F -0.176 7.176 11 C 0.514 3.486 12 O -0.568 6.568 13 C -0.075 4.075 14 C -0.143 4.143 15 C -0.055 4.055 16 C -0.207 4.207 17 C 0.112 3.888 18 O -0.234 6.234 19 C -0.414 4.414 20 H 0.100 0.900 21 C -0.024 4.024 22 N -0.923 5.923 23 Si 1.019 2.981 24 H -0.255 1.255 25 H -0.271 1.271 26 H -0.260 1.260 27 C -0.244 4.244 28 C -0.059 4.059 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.130 0.870 33 H 0.078 0.922 34 H 0.391 0.609 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.144 0.856 38 H 0.109 0.891 39 H 0.273 0.727 40 H 0.117 0.883 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.626 25.353 0.754 31.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.343 5.343 3 C -0.044 4.044 4 C -0.001 4.001 5 H 0.182 0.818 6 O -0.346 6.346 7 C 0.368 3.632 8 F -0.172 7.172 9 F -0.167 7.167 10 F -0.157 7.157 11 C 0.304 3.696 12 O -0.445 6.445 13 C -0.115 4.115 14 C -0.144 4.144 15 C -0.073 4.073 16 C -0.226 4.226 17 C 0.062 3.938 18 O -0.141 6.141 19 C -0.490 4.490 20 H 0.117 0.883 21 C -0.221 4.221 22 N -0.561 5.561 23 Si 0.838 3.162 24 H -0.179 1.179 25 H -0.195 1.195 26 H -0.184 1.184 27 C -0.263 4.263 28 C -0.077 4.077 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.148 0.852 33 H 0.097 0.903 34 H 0.242 0.758 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.161 0.839 38 H 0.128 0.872 39 H 0.081 0.919 40 H 0.134 0.866 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.270 25.065 0.127 31.017 hybrid contribution 1.624 -0.242 0.730 1.797 sum -16.646 24.824 0.857 29.900 Atomic orbital electron populations 1.22231 0.76157 1.05423 1.03853 1.47733 1.08587 1.03956 1.74018 1.22100 1.00385 0.87937 0.93934 1.23817 0.96055 0.82110 0.98130 0.81843 1.86645 1.34719 1.56937 1.56311 1.21807 0.78782 0.89234 0.73413 1.93197 1.47224 1.95560 1.81225 1.93201 1.94847 1.92052 1.36595 1.93198 1.75446 1.66076 1.80983 1.21146 0.87774 0.86156 0.74520 1.90710 1.16171 1.87644 1.50019 1.20552 0.96484 0.87244 1.07172 1.19254 1.03074 0.99772 0.92318 1.20837 0.94391 0.93427 0.98683 1.20429 1.04837 1.02143 0.95180 1.19934 0.90422 0.88087 0.95396 1.83938 1.53214 1.43497 1.33488 1.21781 1.21301 1.22308 0.83645 0.88251 1.26610 0.95842 0.95874 1.03819 1.70185 1.28923 1.27073 1.29910 0.84651 0.78381 0.78465 0.74719 1.17883 1.19517 1.18403 1.21220 1.05034 1.02933 0.97134 1.20917 0.94551 0.93694 0.98557 0.90617 0.88773 0.89172 0.85171 0.90307 0.75807 0.85461 0.85538 0.83862 0.87244 0.91851 0.86571 0.84414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.24 10.24 127.77 1.31 1.54 16 2 N -0.61 -7.85 2.83 -846.77 -2.39 -10.24 16 3 C 0.08 0.98 4.90 86.38 0.42 1.40 16 4 C 0.06 0.79 3.24 30.59 0.10 0.89 16 5 H 0.16 1.24 8.14 -2.39 -0.02 1.22 16 6 O -0.54 -10.91 12.09 -140.63 -1.70 -12.61 16 7 C 0.42 6.37 2.85 71.98 0.21 6.57 16 8 F -0.19 -3.59 16.42 44.97 0.74 -2.85 16 9 F -0.19 -3.43 17.26 44.97 0.78 -2.65 16 10 F -0.18 -2.29 16.80 44.97 0.76 -1.53 16 11 C 0.51 11.11 7.18 87.66 0.63 11.74 16 12 O -0.57 -18.14 14.40 5.32 0.08 -18.06 16 13 C -0.08 -1.39 4.38 29.10 0.13 -1.27 16 14 C -0.14 -4.42 4.38 -19.83 -0.09 -4.51 16 15 C -0.06 -1.93 9.69 22.25 0.22 -1.72 16 16 C -0.21 -9.31 9.99 22.39 0.22 -9.08 16 17 C 0.11 5.84 6.65 22.58 0.15 5.99 16 18 O -0.23 -14.72 9.76 -22.74 -0.22 -14.94 16 19 C -0.41 -25.02 9.49 67.92 0.64 -24.38 16 20 H 0.10 5.52 5.20 -2.91 -0.02 5.50 16 21 C -0.02 -1.43 5.49 84.83 0.47 -0.96 16 22 N -0.92 -58.27 13.67 21.61 0.30 -57.97 16 23 Si 1.02 44.08 29.55 68.60 2.03 46.11 16 24 H -0.25 -10.23 7.11 99.48 0.71 -9.53 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 27 C -0.24 -11.12 9.17 22.39 0.21 -10.91 16 28 C -0.06 -2.09 9.69 22.25 0.22 -1.88 16 29 H 0.08 0.12 8.14 -2.38 -0.02 0.10 16 30 H 0.09 -0.05 8.07 -2.39 -0.02 -0.07 16 31 H 0.09 0.18 6.44 -2.39 -0.02 0.17 16 32 H 0.13 0.73 7.73 -2.39 -0.02 0.71 16 33 H 0.08 1.37 7.08 -2.39 -0.02 1.36 16 34 H 0.39 8.39 8.10 -74.06 -0.60 7.79 16 35 H 0.13 1.59 7.34 -2.39 -0.02 1.58 16 36 H 0.13 1.56 8.05 -2.39 -0.02 1.54 16 37 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 38 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 39 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 40 H 0.12 5.38 5.64 -2.91 -0.02 5.36 16 41 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -84.03 363.87 5.68 -78.35 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.50 Total: 22.96 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: 4.83 Total: -26.56 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: -2.10 Total: -68.21 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -1.85 Total: -45.61 kcal Atomic # 9 Polarization: -9.31 SS G_CDS: 2.27 Total: -7.04 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -84.03 5.68 -78.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181555917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.080 kcal (2) G-P(sol) polarization free energy of solvation -84.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -259.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds