Wall clock time and date at job start Wed Apr 1 2020 04:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.46695 * 2 1 4 4 C 1.35493 * 117.00118 * 180.02562 * 3 2 1 5 5 C 1.39619 * 119.97933 * 180.02562 * 4 3 2 6 6 N 1.31538 * 120.04423 * 179.97438 * 5 4 3 7 7 C 1.33217 * 119.98371 * 359.97438 * 6 5 4 8 8 C 1.47869 * 120.02573 * 180.02562 * 7 6 5 9 9 O 1.21568 * 120.00200 * 179.97438 * 8 7 6 10 10 N 1.34781 * 119.99748 * 359.97438 * 8 7 6 11 11 C 1.39995 * 119.99947 * 175.61890 * 10 8 7 12 12 C 1.38736 * 120.07791 * 34.61949 * 11 10 8 13 13 C 1.38176 * 120.01907 * 179.74703 * 12 11 10 14 14 C 1.38556 * 120.17888 * 0.54510 * 13 12 11 15 15 F 1.35098 * 119.92228 * 179.72928 * 14 13 12 16 16 C 1.38344 * 120.16085 * 359.70633 * 14 13 12 17 17 C 1.38746 * 119.97852 * 0.02562 * 16 14 13 18 18 O 1.35769 * 120.08993 * 179.97438 * 17 16 14 19 19 C 1.34803 * 116.99803 * 5.43436 * 18 17 16 20 20 H 1.08001 * 120.00272 * 354.94953 * 19 18 17 21 21 C 1.38638 * 119.99755 * 174.95156 * 19 18 17 22 22 N 1.31568 * 120.00213 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99906 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47409 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47048 * 120.00014 * 23 21 19 26 26 H 1.48504 * 109.47002 * 239.99858 * 23 21 19 27 27 C 1.39407 * 119.95379 * 0.02562 * 7 6 5 28 28 N 1.32082 * 119.95490 * 359.97438 * 27 7 6 29 29 H 1.09007 * 109.47393 * 60.00618 * 1 2 3 30 30 H 1.08998 * 109.46786 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47561 * 300.00305 * 1 2 3 32 32 H 1.08994 * 109.47561 * 239.99695 * 2 1 3 33 33 H 1.09005 * 109.47087 * 119.98937 * 2 1 3 34 34 H 1.08007 * 119.97484 * 359.97438 * 5 4 3 35 35 H 0.96998 * 120.00345 * 355.63252 * 10 8 7 36 36 H 1.08006 * 119.98609 * 359.97438 * 12 11 10 37 37 H 1.07998 * 119.90870 * 180.27924 * 13 12 11 38 38 H 1.07998 * 120.01304 * 180.02562 * 16 14 13 39 39 H 0.96997 * 120.00186 * 179.97438 * 22 21 19 40 40 H 1.07992 * 120.02659 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3495 1.5250 -0.0005 5 6 3.8825 2.8154 0.0000 6 7 5.1863 2.9894 0.0000 7 6 5.9988 1.9336 0.0000 8 6 7.4647 2.1281 0.0005 9 8 8.2057 1.1644 0.0010 10 7 7.9792 3.3739 0.0005 11 6 9.3636 3.5594 0.0936 12 6 10.2283 2.6527 -0.5022 13 6 11.5945 2.8398 -0.4139 14 6 12.1055 3.9258 0.2784 15 9 13.4422 4.1008 0.3660 16 6 11.2502 4.8317 0.8798 17 6 9.8771 4.6532 0.7906 18 8 9.0356 5.5406 1.3804 19 6 9.5927 6.6329 1.9405 20 1 10.6675 6.7314 1.9792 21 6 8.7859 7.6300 2.4668 22 7 7.4765 7.5103 2.4192 23 14 9.5578 9.1433 3.2436 24 1 11.0372 9.0363 3.1724 25 1 9.1130 10.3567 2.5120 26 1 9.1368 9.2398 4.6644 27 6 5.4662 0.6454 -0.0005 28 7 4.1566 0.4732 -0.0005 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.2238 3.6714 0.0004 35 1 7.3902 4.1419 -0.0639 36 1 9.8333 1.8023 -1.0382 37 1 12.2659 2.1354 -0.8822 38 1 11.6510 5.6776 1.4185 39 1 6.9120 8.2077 2.7877 40 1 6.1237 -0.2113 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188582002.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:00 Heat of formation + Delta-G solvation = -61.990240 kcal Electronic energy + Delta-G solvation = -28969.581955 eV Core-core repulsion = 24472.920583 eV Total energy + Delta-G solvation = -4496.661373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.27810 -41.60016 -40.07655 -38.98238 -38.28188 -36.33944 -34.66264 -33.90194 -32.53266 -32.42123 -30.76813 -29.44180 -28.33799 -25.63588 -25.47517 -24.82535 -23.06502 -22.55677 -21.75220 -20.49475 -18.90797 -18.40924 -18.33225 -18.11789 -17.29867 -16.80971 -16.45791 -15.55157 -15.41552 -15.25617 -15.08289 -14.98925 -14.90937 -14.39409 -14.30432 -14.11285 -13.68298 -13.61116 -13.46574 -13.19832 -13.00564 -12.93049 -12.37914 -12.23764 -12.14702 -11.70390 -11.67311 -11.51016 -11.38036 -11.10827 -10.99533 -10.77120 -10.52714 -10.11744 -9.78865 -9.61766 -9.32488 -8.98343 -8.97318 -7.92015 -7.16379 -6.59986 -4.18500 0.30860 0.82799 1.78645 2.09723 2.47755 2.78687 3.05841 3.08004 3.13488 3.26175 3.68060 3.75546 3.84219 3.97020 4.23950 4.31943 4.61692 4.63638 4.81673 4.84873 4.95249 4.96301 5.01981 5.09313 5.24593 5.35071 5.43491 5.56014 5.62466 5.72223 5.81318 6.00462 6.17555 6.50157 6.69006 6.73018 6.86091 6.89341 6.90483 6.98972 7.16848 7.39556 7.59987 7.81164 7.86592 8.38672 8.84666 9.45181 10.56168 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010287 B = 0.002922 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.157540 B = 9580.393502 C =12175.003492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.294 6.294 4 C 0.293 3.707 5 C 0.051 3.949 6 N -0.368 5.368 7 C -0.011 4.011 8 C 0.575 3.425 9 O -0.530 6.530 10 N -0.624 5.624 11 C 0.051 3.949 12 C -0.046 4.046 13 C -0.232 4.232 14 C 0.134 3.866 15 F -0.151 7.151 16 C -0.260 4.260 17 C 0.162 3.838 18 O -0.163 6.163 19 C -0.394 4.394 20 H 0.096 0.904 21 C 0.044 3.956 22 N -0.853 5.853 23 Si 0.942 3.058 24 H -0.265 1.265 25 H -0.274 1.274 26 H -0.275 1.275 27 C 0.156 3.844 28 N -0.503 5.503 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.185 0.815 35 H 0.425 0.575 36 H 0.142 0.858 37 H 0.124 0.876 38 H 0.144 0.856 39 H 0.272 0.728 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.008 -11.097 -5.532 15.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 O -0.199 6.199 4 C 0.110 3.890 5 C -0.116 4.116 6 N -0.085 5.085 7 C -0.150 4.150 8 C 0.360 3.640 9 O -0.407 6.407 10 N -0.267 5.267 11 C -0.044 4.044 12 C -0.066 4.066 13 C -0.252 4.252 14 C 0.114 3.886 15 F -0.129 7.129 16 C -0.280 4.280 17 C 0.105 3.895 18 O -0.065 6.065 19 C -0.470 4.470 20 H 0.113 0.887 21 C -0.162 4.162 22 N -0.486 5.486 23 Si 0.767 3.233 24 H -0.189 1.189 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.003 4.003 28 N -0.233 5.233 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.202 0.798 35 H 0.263 0.737 36 H 0.160 0.840 37 H 0.142 0.858 38 H 0.161 0.839 39 H 0.082 0.918 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -10.154 -11.440 -5.398 16.220 hybrid contribution 0.340 0.994 0.544 1.183 sum -9.814 -10.446 -4.854 15.132 Atomic orbital electron populations 1.21829 0.92568 1.03110 1.03570 1.22760 0.95161 0.80567 1.02931 1.86251 1.15807 1.31323 1.86498 1.21292 0.85140 0.91788 0.90814 1.23034 0.91560 0.95150 1.01890 1.68472 1.03273 1.32415 1.04318 1.21921 0.95314 0.91130 1.06621 1.17448 0.85446 0.83605 0.77493 1.90760 1.58989 1.40186 1.50794 1.42911 1.06288 1.08601 1.68885 1.16871 0.82370 0.99001 1.06128 1.20649 0.91404 0.97921 0.96673 1.20467 0.95474 1.00393 1.08873 1.17477 0.76257 0.95889 0.98937 1.91415 1.31354 1.95404 1.94768 1.20855 0.92441 1.04112 1.10642 1.18816 0.88971 0.90828 0.90881 1.83951 1.32626 1.29039 1.60905 1.21418 0.93183 0.94952 1.37446 0.88686 1.25306 0.95352 0.98569 0.96966 1.70036 1.03002 1.33875 1.41695 0.85620 0.79201 0.79787 0.78727 1.18940 1.19972 1.20042 1.23500 0.89814 0.97668 0.89342 1.68249 1.05253 1.32475 1.17278 0.91468 0.90100 0.91417 0.91217 0.91188 0.79799 0.73689 0.84007 0.85826 0.83863 0.91805 0.79563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.16 0.38 -0.48 16 2 C 0.06 0.49 6.04 37.16 0.22 0.71 16 3 O -0.29 -3.07 10.12 -18.17 -0.18 -3.25 16 4 C 0.29 3.51 7.50 -16.71 -0.13 3.39 16 5 C 0.05 0.63 11.18 -17.16 -0.19 0.44 16 6 N -0.37 -5.55 9.70 -9.49 -0.09 -5.64 16 7 C -0.01 -0.17 6.74 -82.89 -0.56 -0.73 16 8 C 0.57 10.13 7.65 -12.32 -0.09 10.03 16 9 O -0.53 -9.83 13.75 5.31 0.07 -9.76 16 10 N -0.62 -12.01 5.17 -10.56 -0.05 -12.07 16 11 C 0.05 1.05 6.33 -83.48 -0.53 0.52 16 12 C -0.05 -0.87 8.69 -39.42 -0.34 -1.22 16 13 C -0.23 -4.22 10.02 -39.49 -0.40 -4.61 16 14 C 0.13 2.65 7.29 -39.43 -0.29 2.36 16 15 F -0.15 -2.84 17.26 2.25 0.04 -2.81 16 16 C -0.26 -5.63 9.14 -39.35 -0.36 -5.99 16 17 C 0.16 3.73 6.67 -38.92 -0.26 3.47 16 18 O -0.16 -4.29 9.32 0.07 0.00 -4.28 16 19 C -0.39 -10.39 9.49 30.88 0.29 -10.09 16 20 H 0.10 2.35 5.20 -52.49 -0.27 2.08 16 21 C 0.04 1.14 5.49 -17.52 -0.10 1.04 16 22 N -0.85 -23.35 13.67 55.48 0.76 -22.59 16 23 Si 0.94 19.66 29.55 -169.99 -5.02 14.64 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 27 C 0.16 2.02 10.76 -17.01 -0.18 1.83 16 28 N -0.50 -6.23 9.37 -12.76 -0.12 -6.35 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 33 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 34 H 0.19 1.79 8.06 -52.48 -0.42 1.37 16 35 H 0.42 8.31 7.92 -40.82 -0.32 7.98 16 36 H 0.14 2.52 6.19 -52.48 -0.32 2.20 16 37 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.14 3.10 5.64 -52.49 -0.30 2.81 16 39 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16 40 H 0.19 2.09 7.63 -52.49 -0.40 1.69 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -29.83 360.16 -5.41 -35.23 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -3.71 Total: 10.76 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -2.52 Total: 0.69 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: 0.49 Total: -46.65 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.11 Total: -17.30 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.04 Total: -2.81 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.83 -5.41 -35.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188582002.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.758 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds