Wall clock time and date at job start Wed Apr 1 2020 04:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.46695 * 2 1 4 4 C 1.35493 * 117.00118 * 180.02562 * 3 2 1 5 5 C 1.39619 * 119.97933 * 180.02562 * 4 3 2 6 6 N 1.31538 * 120.04423 * 179.97438 * 5 4 3 7 7 C 1.33217 * 119.98371 * 359.97438 * 6 5 4 8 8 C 1.47869 * 120.02573 * 180.02562 * 7 6 5 9 9 O 1.21568 * 120.00200 * 179.97438 * 8 7 6 10 10 N 1.34781 * 119.99748 * 359.97438 * 8 7 6 11 11 C 1.39995 * 119.99947 * 175.61890 * 10 8 7 12 12 C 1.38736 * 120.07791 * 34.61949 * 11 10 8 13 13 C 1.38176 * 120.01907 * 179.74703 * 12 11 10 14 14 C 1.38556 * 120.17888 * 0.54510 * 13 12 11 15 15 F 1.35098 * 119.92228 * 179.72928 * 14 13 12 16 16 C 1.38344 * 120.16085 * 359.70633 * 14 13 12 17 17 C 1.38746 * 119.97852 * 0.02562 * 16 14 13 18 18 O 1.35769 * 120.08993 * 179.97438 * 17 16 14 19 19 C 1.34803 * 116.99803 * 5.43436 * 18 17 16 20 20 H 1.08001 * 120.00272 * 354.94953 * 19 18 17 21 21 C 1.38638 * 119.99755 * 174.95156 * 19 18 17 22 22 N 1.31568 * 120.00213 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99906 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47409 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47048 * 120.00014 * 23 21 19 26 26 H 1.48504 * 109.47002 * 239.99858 * 23 21 19 27 27 C 1.39407 * 119.95379 * 0.02562 * 7 6 5 28 28 N 1.32082 * 119.95490 * 359.97438 * 27 7 6 29 29 H 1.09007 * 109.47393 * 60.00618 * 1 2 3 30 30 H 1.08998 * 109.46786 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47561 * 300.00305 * 1 2 3 32 32 H 1.08994 * 109.47561 * 239.99695 * 2 1 3 33 33 H 1.09005 * 109.47087 * 119.98937 * 2 1 3 34 34 H 1.08007 * 119.97484 * 359.97438 * 5 4 3 35 35 H 0.96998 * 120.00345 * 355.63252 * 10 8 7 36 36 H 1.08006 * 119.98609 * 359.97438 * 12 11 10 37 37 H 1.07998 * 119.90870 * 180.27924 * 13 12 11 38 38 H 1.07998 * 120.01304 * 180.02562 * 16 14 13 39 39 H 0.96997 * 120.00186 * 179.97438 * 22 21 19 40 40 H 1.07992 * 120.02659 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3495 1.5250 -0.0005 5 6 3.8825 2.8154 0.0000 6 7 5.1863 2.9894 0.0000 7 6 5.9988 1.9336 0.0000 8 6 7.4647 2.1281 0.0005 9 8 8.2057 1.1644 0.0010 10 7 7.9792 3.3739 0.0005 11 6 9.3636 3.5594 0.0936 12 6 10.2283 2.6527 -0.5022 13 6 11.5945 2.8398 -0.4139 14 6 12.1055 3.9258 0.2784 15 9 13.4422 4.1008 0.3660 16 6 11.2502 4.8317 0.8798 17 6 9.8771 4.6532 0.7906 18 8 9.0356 5.5406 1.3804 19 6 9.5927 6.6329 1.9405 20 1 10.6675 6.7314 1.9792 21 6 8.7859 7.6300 2.4668 22 7 7.4765 7.5103 2.4192 23 14 9.5578 9.1433 3.2436 24 1 11.0372 9.0363 3.1724 25 1 9.1130 10.3567 2.5120 26 1 9.1368 9.2398 4.6644 27 6 5.4662 0.6454 -0.0005 28 7 4.1566 0.4732 -0.0005 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.2238 3.6714 0.0004 35 1 7.3902 4.1419 -0.0639 36 1 9.8333 1.8023 -1.0382 37 1 12.2659 2.1354 -0.8822 38 1 11.6510 5.6776 1.4185 39 1 6.9120 8.2077 2.7877 40 1 6.1237 -0.2113 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188582002.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:00 Heat of formation + Delta-G solvation = -82.848553 kcal Electronic energy + Delta-G solvation = -28970.486440 eV Core-core repulsion = 24472.920583 eV Total energy + Delta-G solvation = -4497.565857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.83765 -42.66371 -41.54793 -40.31561 -39.49712 -38.01101 -35.91954 -35.19258 -34.31229 -33.29666 -31.74712 -31.06439 -29.88233 -27.42893 -26.54469 -25.94900 -24.16377 -23.74183 -23.29920 -21.90907 -20.16496 -19.82392 -19.77327 -19.34720 -18.82061 -17.91527 -17.64899 -17.08915 -16.96520 -16.72557 -16.45813 -16.18987 -16.01634 -15.93912 -15.54810 -15.37676 -15.26200 -15.17696 -14.92476 -14.45925 -14.06753 -13.84273 -13.66145 -13.49720 -13.43497 -13.05705 -13.04204 -12.61010 -12.46835 -12.44167 -12.35782 -12.12390 -11.81956 -11.68147 -11.45734 -11.11848 -10.83521 -10.47349 -9.98976 -9.57664 -8.81656 -8.49810 -6.17197 -0.78343 -0.19318 0.18775 0.45627 1.37299 1.43350 1.48512 1.53754 1.60062 1.92174 2.14526 2.51469 2.67568 2.77868 2.86865 3.05229 3.16574 3.23228 3.44094 3.65775 3.87492 3.94469 4.05087 4.14497 4.17670 4.34223 4.40067 4.42813 4.57440 4.62923 4.91485 4.93939 4.94780 5.01191 5.21409 5.22074 5.28850 5.33984 5.45810 5.82536 5.85455 5.93190 6.00246 6.25570 6.47732 6.90871 6.94359 7.62113 8.70326 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010287 B = 0.002922 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.157540 B = 9580.393502 C =12175.003492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.293 6.293 4 C 0.305 3.695 5 C 0.051 3.949 6 N -0.393 5.393 7 C -0.035 4.035 8 C 0.579 3.421 9 O -0.540 6.540 10 N -0.633 5.633 11 C 0.050 3.950 12 C -0.045 4.045 13 C -0.204 4.204 14 C 0.129 3.871 15 F -0.143 7.143 16 C -0.265 4.265 17 C 0.134 3.866 18 O -0.201 6.201 19 C -0.418 4.418 20 H 0.101 0.899 21 C -0.009 4.009 22 N -0.902 5.902 23 Si 1.013 2.987 24 H -0.256 1.256 25 H -0.267 1.267 26 H -0.270 1.270 27 C 0.169 3.831 28 N -0.504 5.504 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.208 0.792 35 H 0.420 0.580 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.137 0.863 39 H 0.275 0.725 40 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.094 -12.611 -6.176 17.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.197 6.197 4 C 0.120 3.880 5 C -0.118 4.118 6 N -0.110 5.110 7 C -0.172 4.172 8 C 0.366 3.634 9 O -0.419 6.419 10 N -0.276 5.276 11 C -0.045 4.045 12 C -0.066 4.066 13 C -0.223 4.223 14 C 0.109 3.891 15 F -0.122 7.122 16 C -0.286 4.286 17 C 0.080 3.920 18 O -0.106 6.106 19 C -0.493 4.493 20 H 0.118 0.882 21 C -0.209 4.209 22 N -0.538 5.538 23 Si 0.833 3.167 24 H -0.179 1.179 25 H -0.192 1.192 26 H -0.195 1.195 27 C 0.010 3.990 28 N -0.234 5.234 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.225 0.775 35 H 0.258 0.742 36 H 0.176 0.824 37 H 0.180 0.820 38 H 0.154 0.846 39 H 0.084 0.916 40 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -10.216 -13.012 -6.065 17.620 hybrid contribution 0.313 1.182 0.601 1.362 sum -9.902 -11.830 -5.464 16.367 Atomic orbital electron populations 1.21853 0.90548 1.04517 1.03634 1.23056 0.96730 0.79266 1.03107 1.86280 1.14672 1.33074 1.85695 1.21400 0.85821 0.91597 0.89187 1.23406 0.90911 0.96327 1.01138 1.68388 1.04514 1.33038 1.05068 1.21604 0.93910 0.92152 1.09556 1.17761 0.86619 0.82708 0.76309 1.90724 1.59742 1.40158 1.51245 1.43001 1.05706 1.09218 1.69649 1.17195 0.83597 0.98460 1.05208 1.20903 0.91535 0.97807 0.96308 1.20898 0.95642 0.99513 1.06271 1.17479 0.76406 0.96042 0.99191 1.91435 1.30622 1.95396 1.94728 1.20924 0.92391 1.04506 1.10778 1.19214 0.89547 0.91390 0.91840 1.83936 1.33650 1.29970 1.63060 1.21813 0.93726 0.95644 1.38135 0.88169 1.26419 0.95810 1.01405 0.97285 1.70153 1.04490 1.35302 1.43862 0.84604 0.78664 0.75722 0.77752 1.17921 1.19180 1.19492 1.23678 0.90214 0.97149 0.87913 1.68345 1.04887 1.32448 1.17676 0.91256 0.88014 0.91487 0.90844 0.91192 0.77543 0.74218 0.82354 0.82002 0.84577 0.91611 0.77912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 71.98 0.74 -0.58 16 2 C 0.05 0.74 6.04 71.98 0.43 1.18 16 3 O -0.29 -5.61 10.12 -87.94 -0.89 -6.50 16 4 C 0.30 6.89 7.50 84.91 0.64 7.52 16 5 C 0.05 1.22 11.18 85.07 0.95 2.18 16 6 N -0.39 -11.98 9.70 -183.94 -1.78 -13.76 16 7 C -0.03 -1.06 6.74 41.77 0.28 -0.77 16 8 C 0.58 20.48 7.65 86.79 0.66 21.15 16 9 O -0.54 -19.61 13.75 -3.93 -0.05 -19.66 16 10 N -0.63 -25.03 5.17 -305.60 -1.58 -26.61 16 11 C 0.05 2.10 6.33 38.26 0.24 2.34 16 12 C -0.05 -1.64 8.69 22.37 0.19 -1.45 16 13 C -0.20 -6.83 10.02 22.33 0.22 -6.61 16 14 C 0.13 4.88 7.29 22.37 0.16 5.05 16 15 F -0.14 -5.12 17.26 44.97 0.78 -4.34 16 16 C -0.27 -11.63 9.14 22.42 0.20 -11.43 16 17 C 0.13 6.38 6.67 22.70 0.15 6.53 16 18 O -0.20 -11.14 9.32 -22.68 -0.21 -11.36 16 19 C -0.42 -22.94 9.49 67.92 0.64 -22.30 16 20 H 0.10 5.15 5.20 -2.91 -0.02 5.14 16 21 C -0.01 -0.49 5.49 84.83 0.47 -0.03 16 22 N -0.90 -51.55 13.67 21.61 0.30 -51.25 16 23 Si 1.01 41.13 29.55 68.60 2.03 43.16 16 24 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 25 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 26 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 27 C 0.17 4.20 10.76 84.94 0.91 5.12 16 28 N -0.50 -11.75 9.37 -307.07 -2.88 -14.63 16 29 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 1.00 8.11 -2.39 -0.02 0.98 16 33 H 0.07 1.00 8.11 -2.38 -0.02 0.98 16 34 H 0.21 3.83 8.06 -2.91 -0.02 3.80 16 35 H 0.42 17.34 7.92 -92.71 -0.73 16.61 16 36 H 0.16 5.26 6.19 -2.91 -0.02 5.24 16 37 H 0.16 4.26 8.06 -2.91 -0.02 4.23 16 38 H 0.14 6.07 5.64 -2.91 -0.02 6.05 16 39 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 40 H 0.20 4.23 7.63 -2.91 -0.02 4.21 16 Total: -1.00 -66.18 360.16 3.01 -63.17 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: 0.40 Total: 33.89 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 6.91 Total: 7.90 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -5.95 Total: -106.26 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -1.16 Total: -37.52 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.78 Total: -4.34 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -66.18 3.01 -63.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188582002.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.682 kcal (2) G-P(sol) polarization free energy of solvation -66.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds