Wall clock time and date at job start Wed Apr 1 2020 04:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00063 * 2 1 4 4 C 1.52994 * 109.47413 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47203 * 64.99360 * 4 3 2 6 6 C 1.46492 * 120.00087 * 269.99882 * 5 4 3 7 7 C 1.53000 * 109.47735 * 274.34166 * 6 5 4 8 8 F 1.39899 * 109.46986 * 59.99897 * 7 6 5 9 9 F 1.39895 * 109.47390 * 180.02562 * 7 6 5 10 10 F 1.39899 * 109.46642 * 300.00227 * 7 6 5 11 11 C 1.34777 * 119.99836 * 90.00416 * 5 4 3 12 12 O 1.21594 * 119.99985 * 175.73453 * 11 5 4 13 13 C 1.47534 * 119.99977 * 355.73363 * 11 5 4 14 14 C 1.39662 * 120.20081 * 58.48327 * 13 11 5 15 15 C 1.37824 * 119.92379 * 180.02562 * 14 13 11 16 16 C 1.38573 * 120.32148 * 0.02562 * 15 14 13 17 17 C 1.38026 * 120.40456 * 0.02562 * 16 15 14 18 18 C 1.38840 * 120.06733 * 359.95488 * 17 16 15 19 19 O 1.35516 * 120.15583 * 180.02562 * 18 17 16 20 20 C 1.34809 * 117.00624 * 354.19454 * 19 18 17 21 21 H 1.08005 * 119.99893 * 5.13755 * 20 19 18 22 22 C 1.38705 * 120.00608 * 185.13926 * 20 19 18 23 23 N 1.31513 * 119.99432 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00349 * 179.97438 * 22 20 19 25 25 H 1.48510 * 109.46908 * 89.99632 * 24 22 20 26 26 H 1.48495 * 109.47422 * 209.99741 * 24 22 20 27 27 H 1.48503 * 109.47077 * 330.00070 * 24 22 20 28 28 H 1.09000 * 109.47036 * 60.00781 * 1 2 3 29 29 H 1.09004 * 109.46837 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47333 * 300.00296 * 1 2 3 31 31 H 1.09001 * 109.47387 * 59.98898 * 3 2 1 32 32 H 1.09006 * 109.46954 * 299.99704 * 3 2 1 33 33 H 1.09000 * 109.47115 * 304.99665 * 4 3 2 34 34 H 1.09001 * 109.47433 * 184.99777 * 4 3 2 35 35 H 1.08999 * 109.47333 * 34.34294 * 6 5 4 36 36 H 1.09001 * 109.47384 * 154.34026 * 6 5 4 37 37 H 1.08005 * 120.03884 * 0.27812 * 14 13 11 38 38 H 1.07997 * 119.84267 * 180.02562 * 15 14 13 39 39 H 1.08002 * 119.79913 * 179.97438 * 16 15 14 40 40 H 1.07998 * 119.96553 * 179.97438 * 17 16 15 41 41 H 0.96999 * 120.00057 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1053 -0.8921 -1.3426 7 6 5.4861 -1.3136 -0.8360 8 9 5.6362 -0.9134 0.4961 9 9 5.6100 -2.7044 -0.9224 10 9 6.4747 -0.7082 -1.6191 11 6 4.2615 1.3336 -2.3218 12 8 4.7007 0.8263 -3.3358 13 6 4.0415 2.7912 -2.2618 14 6 4.6866 3.5597 -1.2903 15 6 4.4765 4.9208 -1.2391 16 6 3.6269 5.5322 -2.1472 17 6 2.9817 4.7855 -3.1122 18 6 3.1817 3.4132 -3.1790 19 8 2.5495 2.6784 -4.1261 20 6 1.6475 3.3187 -4.8967 21 1 1.5167 4.3865 -4.8011 22 6 0.8874 2.6063 -5.8125 23 7 1.0470 1.3061 -5.9293 24 14 -0.3628 3.4935 -6.8797 25 1 0.2874 3.9368 -8.1392 26 1 -1.4834 2.5728 -7.1987 27 1 -0.8861 4.6761 -6.1499 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8514 0.5683 0.8410 34 1 3.9785 2.1765 0.0889 35 1 3.3350 -1.3638 -0.7325 36 1 3.9883 -1.2040 -2.3804 37 1 5.3526 3.0884 -0.5825 38 1 4.9763 5.5139 -0.4876 39 1 3.4681 6.5994 -2.0992 40 1 2.3208 5.2693 -3.8162 41 1 0.5158 0.8079 -6.5699 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194458070.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:47 Heat of formation + Delta-G solvation = -221.803385 kcal Electronic energy + Delta-G solvation = -32461.267792 eV Core-core repulsion = 27506.987215 eV Total energy + Delta-G solvation = -4954.280577 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.88257 -47.45105 -47.31365 -40.07379 -38.56263 -37.60176 -36.49353 -35.26237 -32.45028 -31.50674 -30.11184 -29.13704 -28.21877 -26.12537 -25.52279 -23.95291 -23.14899 -22.14082 -21.61309 -19.52433 -18.37706 -18.32165 -18.16364 -17.39697 -17.20364 -16.61927 -16.27684 -15.85242 -15.26303 -15.05402 -14.80335 -14.65414 -14.33252 -14.31169 -14.12155 -13.91617 -13.83044 -13.69816 -13.55085 -13.51085 -13.45514 -13.04036 -12.73541 -12.56663 -12.28015 -12.00323 -11.84258 -11.75609 -11.73826 -11.40644 -11.21475 -11.06788 -10.95145 -10.83030 -10.53735 -9.76033 -9.56512 -9.20396 -8.97512 -8.64206 -8.31647 -7.44335 -6.56173 -4.16586 1.70329 2.18099 2.84023 2.99158 3.05462 3.05961 3.10963 3.36297 3.84737 3.84922 4.07388 4.25679 4.36516 4.48608 4.89302 4.96157 5.02694 5.12626 5.23564 5.33024 5.39082 5.42825 5.50428 5.53523 5.61245 5.65453 5.70069 5.80387 5.91005 5.96421 6.04957 6.44530 6.49141 6.61238 6.84164 6.93609 7.13109 7.18513 7.22006 7.56537 7.60256 7.84639 8.64992 8.86121 9.52720 10.59238 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010344 B = 0.004290 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.201098 B = 6524.613519 C = 7005.158316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.043 3.957 4 C 0.104 3.896 5 N -0.607 5.607 6 C 0.082 3.918 7 C 0.432 3.568 8 F -0.188 7.188 9 F -0.186 7.186 10 F -0.175 7.175 11 C 0.583 3.417 12 O -0.504 6.504 13 C -0.215 4.215 14 C -0.048 4.048 15 C -0.219 4.219 16 C -0.055 4.055 17 C -0.232 4.232 18 C 0.187 3.813 19 O -0.151 6.151 20 C -0.400 4.400 21 H 0.095 0.905 22 C 0.044 3.956 23 N -0.844 5.844 24 Si 0.942 3.058 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.266 1.266 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.133 0.867 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.169 0.020 13.854 13.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.035 4.035 4 C -0.019 4.019 5 N -0.341 5.341 6 C -0.044 4.044 7 C 0.376 3.624 8 F -0.170 7.170 9 F -0.168 7.168 10 F -0.157 7.157 11 C 0.373 3.627 12 O -0.376 6.376 13 C -0.220 4.220 14 C -0.066 4.066 15 C -0.238 4.238 16 C -0.073 4.073 17 C -0.251 4.251 18 C 0.129 3.871 19 O -0.051 6.051 20 C -0.475 4.475 21 H 0.112 0.888 22 C -0.162 4.162 23 N -0.476 5.476 24 Si 0.766 3.234 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.191 1.191 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.135 0.865 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.150 0.850 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.449 -0.876 13.035 13.145 hybrid contribution -0.654 0.679 -0.402 1.025 sum 0.795 -0.197 12.633 12.660 Atomic orbital electron populations 1.22704 0.81041 1.02459 1.00080 1.87783 1.19793 1.27932 1.95486 1.23053 0.93982 0.85164 1.01308 1.22010 0.92887 1.00906 0.86054 1.47629 1.68826 1.04171 1.13482 1.22513 0.90799 0.84135 1.06945 1.21562 0.90825 0.74611 0.75449 1.93128 1.96653 1.90501 1.36694 1.93158 1.96743 1.30850 1.96029 1.93229 1.65123 1.83069 1.74272 1.18318 0.75930 0.86762 0.81722 1.90806 1.42254 1.74534 1.30034 1.18580 1.09235 0.91836 1.02300 1.20674 0.96886 0.93907 0.95175 1.20484 1.05578 0.94248 1.03511 1.20902 0.94264 0.98660 0.93493 1.21143 1.06981 0.93442 1.03508 1.19145 0.90704 0.90064 0.87148 1.83994 1.46955 1.36327 1.37864 1.21400 1.15479 0.93378 1.17284 0.88786 1.25355 0.97876 0.95690 0.97327 1.70058 1.38060 1.06173 1.33332 0.85708 0.79166 0.78798 0.79757 1.19658 1.20134 1.19067 0.93613 0.89920 0.94451 0.92478 0.91834 0.89372 0.87250 0.85558 0.85433 0.86452 0.86976 0.87043 0.84979 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.39 -5.59 9.46 -35.23 -0.33 -5.93 16 3 C 0.04 0.59 6.28 37.15 0.23 0.82 16 4 C 0.10 1.40 5.36 -4.04 -0.02 1.37 16 5 N -0.61 -10.28 2.35 -174.92 -0.41 -10.69 16 6 C 0.08 1.27 5.31 -4.05 -0.02 1.25 16 7 C 0.43 6.42 3.29 37.16 0.12 6.54 16 8 F -0.19 -2.58 15.82 2.25 0.04 -2.55 16 9 F -0.19 -2.66 17.32 2.25 0.04 -2.62 16 10 F -0.18 -3.08 16.60 2.25 0.04 -3.04 16 11 C 0.58 12.43 6.47 -12.47 -0.08 12.35 16 12 O -0.50 -12.87 16.12 5.25 0.08 -12.78 16 13 C -0.21 -4.41 4.94 -104.81 -0.52 -4.93 16 14 C -0.05 -0.78 7.65 -39.20 -0.30 -1.08 16 15 C -0.22 -3.32 10.02 -39.61 -0.40 -3.72 16 16 C -0.05 -0.89 10.03 -39.54 -0.40 -1.29 16 17 C -0.23 -4.65 9.16 -39.44 -0.36 -5.01 16 18 C 0.19 4.35 6.66 -38.60 -0.26 4.09 16 19 O -0.15 -4.21 9.09 0.79 0.01 -4.21 16 20 C -0.40 -10.76 9.49 30.90 0.29 -10.46 16 21 H 0.09 2.30 5.21 -52.48 -0.27 2.03 16 22 C 0.04 1.18 5.49 -17.52 -0.10 1.09 16 23 N -0.84 -24.33 13.67 55.48 0.76 -23.57 16 24 Si 0.94 19.79 29.55 -169.99 -5.02 14.76 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 27 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 33 H 0.09 1.01 6.86 -51.93 -0.36 0.65 16 34 H 0.11 1.37 4.24 -51.93 -0.22 1.15 16 35 H 0.13 1.67 7.05 -51.93 -0.37 1.31 16 36 H 0.13 2.19 7.35 -51.93 -0.38 1.81 16 37 H 0.12 1.60 7.13 -52.48 -0.37 1.23 16 38 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 40 H 0.13 2.64 5.64 -52.49 -0.30 2.34 16 41 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 361.01 15.07 5.44 5.44 Total: -1.00 -32.81 361.01 -4.41 -37.22 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -4.36 Total: 5.43 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -0.69 Total: 2.53 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.35 Total: -34.26 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.24 Total: -22.92 kcal Atomic # 9 Polarization: -8.32 SS G_CDS: 0.11 Total: -8.21 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.81 -4.41 -37.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194458070.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.582 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds