Wall clock time and date at job start Wed Apr 1 2020 04:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00063 * 2 1 4 4 C 1.52994 * 109.47413 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47203 * 64.99360 * 4 3 2 6 6 C 1.46492 * 120.00087 * 269.99882 * 5 4 3 7 7 C 1.53000 * 109.47735 * 274.34166 * 6 5 4 8 8 F 1.39899 * 109.46986 * 59.99897 * 7 6 5 9 9 F 1.39895 * 109.47390 * 180.02562 * 7 6 5 10 10 F 1.39899 * 109.46642 * 300.00227 * 7 6 5 11 11 C 1.34777 * 119.99836 * 90.00416 * 5 4 3 12 12 O 1.21594 * 119.99985 * 175.73453 * 11 5 4 13 13 C 1.47534 * 119.99977 * 355.73363 * 11 5 4 14 14 C 1.39662 * 120.20081 * 58.48327 * 13 11 5 15 15 C 1.37824 * 119.92379 * 180.02562 * 14 13 11 16 16 C 1.38573 * 120.32148 * 0.02562 * 15 14 13 17 17 C 1.38026 * 120.40456 * 0.02562 * 16 15 14 18 18 C 1.38840 * 120.06733 * 359.95488 * 17 16 15 19 19 O 1.35516 * 120.15583 * 180.02562 * 18 17 16 20 20 C 1.34809 * 117.00624 * 354.19454 * 19 18 17 21 21 H 1.08005 * 119.99893 * 5.13755 * 20 19 18 22 22 C 1.38705 * 120.00608 * 185.13926 * 20 19 18 23 23 N 1.31513 * 119.99432 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00349 * 179.97438 * 22 20 19 25 25 H 1.48510 * 109.46908 * 89.99632 * 24 22 20 26 26 H 1.48495 * 109.47422 * 209.99741 * 24 22 20 27 27 H 1.48503 * 109.47077 * 330.00070 * 24 22 20 28 28 H 1.09000 * 109.47036 * 60.00781 * 1 2 3 29 29 H 1.09004 * 109.46837 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47333 * 300.00296 * 1 2 3 31 31 H 1.09001 * 109.47387 * 59.98898 * 3 2 1 32 32 H 1.09006 * 109.46954 * 299.99704 * 3 2 1 33 33 H 1.09000 * 109.47115 * 304.99665 * 4 3 2 34 34 H 1.09001 * 109.47433 * 184.99777 * 4 3 2 35 35 H 1.08999 * 109.47333 * 34.34294 * 6 5 4 36 36 H 1.09001 * 109.47384 * 154.34026 * 6 5 4 37 37 H 1.08005 * 120.03884 * 0.27812 * 14 13 11 38 38 H 1.07997 * 119.84267 * 180.02562 * 15 14 13 39 39 H 1.08002 * 119.79913 * 179.97438 * 16 15 14 40 40 H 1.07998 * 119.96553 * 179.97438 * 17 16 15 41 41 H 0.96999 * 120.00057 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1053 -0.8921 -1.3426 7 6 5.4861 -1.3136 -0.8360 8 9 5.6362 -0.9134 0.4961 9 9 5.6100 -2.7044 -0.9224 10 9 6.4747 -0.7082 -1.6191 11 6 4.2615 1.3336 -2.3218 12 8 4.7007 0.8263 -3.3358 13 6 4.0415 2.7912 -2.2618 14 6 4.6866 3.5597 -1.2903 15 6 4.4765 4.9208 -1.2391 16 6 3.6269 5.5322 -2.1472 17 6 2.9817 4.7855 -3.1122 18 6 3.1817 3.4132 -3.1790 19 8 2.5495 2.6784 -4.1261 20 6 1.6475 3.3187 -4.8967 21 1 1.5167 4.3865 -4.8011 22 6 0.8874 2.6063 -5.8125 23 7 1.0470 1.3061 -5.9293 24 14 -0.3628 3.4935 -6.8797 25 1 0.2874 3.9368 -8.1392 26 1 -1.4834 2.5728 -7.1987 27 1 -0.8861 4.6761 -6.1499 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8514 0.5683 0.8410 34 1 3.9785 2.1765 0.0889 35 1 3.3350 -1.3638 -0.7325 36 1 3.9883 -1.2040 -2.3804 37 1 5.3526 3.0884 -0.5825 38 1 4.9763 5.5139 -0.4876 39 1 3.4681 6.5994 -2.0992 40 1 2.3208 5.2693 -3.8162 41 1 0.5158 0.8079 -6.5699 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194458070.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:46 Heat of formation + Delta-G solvation = -243.880374 kcal Electronic energy + Delta-G solvation = -32462.225122 eV Core-core repulsion = 27506.987215 eV Total energy + Delta-G solvation = -4955.237907 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.12571 -48.64755 -48.60537 -41.61885 -40.15451 -38.82435 -38.09460 -36.72525 -34.34913 -32.87677 -31.42274 -30.67692 -29.54237 -27.41544 -27.18190 -25.35398 -24.38154 -23.52221 -23.15108 -20.96709 -19.94571 -19.63743 -19.57586 -18.88572 -18.55692 -18.07025 -17.59890 -17.08071 -16.69225 -16.48280 -16.35871 -15.92348 -15.70846 -15.60251 -15.49766 -15.44207 -15.29090 -15.06621 -14.99273 -14.78498 -14.76350 -14.51869 -14.30161 -13.78710 -13.63825 -13.58079 -13.24956 -13.01701 -12.96253 -12.88175 -12.65263 -12.52455 -12.33576 -12.14710 -12.07725 -11.51047 -10.88467 -10.84984 -10.64715 -10.06918 -9.74883 -9.06822 -8.48608 -6.18472 0.22488 0.69101 1.32435 1.42427 1.48108 1.50249 1.54700 1.96123 2.13942 2.72158 2.76547 2.89528 3.01275 3.13199 3.23180 3.37942 3.56434 4.00916 4.06430 4.09565 4.15697 4.27592 4.31493 4.34715 4.50192 4.52990 4.53982 4.56320 4.63259 4.80624 4.83993 4.93042 5.06978 5.11372 5.27712 5.49687 5.57167 5.69909 5.92885 6.07814 6.14445 6.23392 6.93451 7.06639 7.73804 8.72874 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010344 B = 0.004290 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.201098 B = 6524.613519 C = 7005.158316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.405 6.405 3 C 0.046 3.954 4 C 0.100 3.900 5 N -0.600 5.600 6 C 0.081 3.919 7 C 0.443 3.557 8 F -0.174 7.174 9 F -0.181 7.181 10 F -0.192 7.192 11 C 0.576 3.424 12 O -0.564 6.564 13 C -0.225 4.225 14 C -0.044 4.044 15 C -0.185 4.185 16 C -0.045 4.045 17 C -0.246 4.246 18 C 0.149 3.851 19 O -0.214 6.214 20 C -0.417 4.417 21 H 0.108 0.892 22 C -0.021 4.021 23 N -0.912 5.912 24 Si 1.018 2.982 25 H -0.266 1.266 26 H -0.273 1.273 27 H -0.246 1.246 28 H 0.018 0.982 29 H 0.098 0.902 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.021 0.979 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.151 0.849 36 H 0.101 0.899 37 H 0.154 0.846 38 H 0.166 0.834 39 H 0.154 0.846 40 H 0.124 0.876 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.757 2.652 17.676 17.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.325 6.325 3 C -0.032 4.032 4 C -0.020 4.020 5 N -0.333 5.333 6 C -0.045 4.045 7 C 0.387 3.613 8 F -0.156 7.156 9 F -0.162 7.162 10 F -0.173 7.173 11 C 0.367 3.633 12 O -0.441 6.441 13 C -0.230 4.230 14 C -0.063 4.063 15 C -0.203 4.203 16 C -0.063 4.063 17 C -0.265 4.265 18 C 0.096 3.904 19 O -0.119 6.119 20 C -0.493 4.493 21 H 0.125 0.875 22 C -0.219 4.219 23 N -0.549 5.549 24 Si 0.837 3.163 25 H -0.191 1.191 26 H -0.198 1.198 27 H -0.169 1.169 28 H 0.037 0.963 29 H 0.117 0.883 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.039 0.961 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.169 0.831 36 H 0.119 0.881 37 H 0.172 0.828 38 H 0.183 0.817 39 H 0.172 0.828 40 H 0.142 0.858 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.054 1.800 16.961 17.180 hybrid contribution -0.622 -0.009 -1.209 1.360 sum 1.432 1.791 15.752 15.918 Atomic orbital electron populations 1.22827 0.80033 1.03608 1.00050 1.87746 1.20963 1.28254 1.95525 1.23036 0.94186 0.85030 1.00943 1.22349 0.92710 1.02052 0.84936 1.47643 1.67397 1.04535 1.13679 1.22566 0.92185 0.83606 1.06119 1.21234 0.89714 0.74702 0.75663 1.93148 1.96532 1.90398 1.35505 1.93172 1.96643 1.30348 1.96044 1.93203 1.65742 1.83453 1.74949 1.18657 0.75223 0.87639 0.81827 1.90767 1.45304 1.75593 1.32422 1.18925 1.09113 0.91975 1.02953 1.21142 0.96218 0.94584 0.94317 1.21148 1.02783 0.93758 1.02596 1.21404 0.92699 1.00543 0.91675 1.21288 1.07866 0.92451 1.04894 1.19807 0.91496 0.91601 0.87508 1.83981 1.49278 1.38060 1.40538 1.21899 1.15732 0.94110 1.17553 0.87527 1.26645 1.00056 0.96431 0.98779 1.70235 1.40690 1.08390 1.35582 0.84603 0.76150 0.77943 0.77612 1.19130 1.19776 1.16925 0.96279 0.88327 0.91744 0.88827 0.96060 0.86379 0.85824 0.83090 0.88105 0.82846 0.81692 0.82789 0.85810 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 16 2 O -0.41 -11.22 9.46 -148.98 -1.41 -12.63 16 3 C 0.05 1.20 6.28 71.98 0.45 1.65 16 4 C 0.10 2.45 5.36 86.38 0.46 2.91 16 5 N -0.60 -20.35 2.35 -825.59 -1.94 -22.29 16 6 C 0.08 2.54 5.31 86.38 0.46 3.00 16 7 C 0.44 12.85 3.29 71.98 0.24 13.09 16 8 F -0.17 -4.33 15.82 44.97 0.71 -3.61 16 9 F -0.18 -5.03 17.32 44.97 0.78 -4.25 16 10 F -0.19 -6.76 16.60 44.97 0.75 -6.02 16 11 C 0.58 25.49 6.47 86.70 0.56 26.05 16 12 O -0.56 -30.91 16.12 -3.98 -0.06 -30.98 16 13 C -0.23 -9.28 4.94 -19.99 -0.10 -9.38 16 14 C -0.04 -1.29 7.65 22.52 0.17 -1.12 16 15 C -0.18 -4.51 10.02 22.25 0.22 -4.28 16 16 C -0.05 -1.28 10.03 22.30 0.22 -1.06 16 17 C -0.25 -9.78 9.16 22.36 0.20 -9.58 16 18 C 0.15 7.21 6.66 22.91 0.15 7.36 16 19 O -0.21 -12.91 9.09 -19.94 -0.18 -13.09 16 20 C -0.42 -24.01 9.49 67.93 0.64 -23.36 16 21 H 0.11 5.50 5.21 -2.91 -0.02 5.48 16 22 C -0.02 -1.17 5.49 84.85 0.47 -0.70 16 23 N -0.91 -57.13 13.67 21.62 0.30 -56.84 16 24 Si 1.02 42.58 29.55 68.60 2.03 44.61 16 25 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 26 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 27 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 28 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.02 0.74 8.07 -2.38 -0.02 0.72 16 33 H 0.12 2.23 6.86 -2.39 -0.02 2.21 16 34 H 0.12 2.62 4.24 -2.39 -0.01 2.61 16 35 H 0.15 3.92 7.05 -2.39 -0.02 3.90 16 36 H 0.10 3.76 7.35 -2.39 -0.02 3.74 16 37 H 0.15 3.38 7.13 -2.91 -0.02 3.36 16 38 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 39 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 40 H 0.12 5.03 5.64 -2.91 -0.02 5.01 16 41 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -82.09 361.01 7.46 -74.63 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 1.09 Total: 23.92 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 5.41 Total: 6.56 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -1.65 Total: -79.13 kcal Atomic # 8 Polarization: -55.04 SS G_CDS: -1.66 Total: -56.70 kcal Atomic # 9 Polarization: -16.12 SS G_CDS: 2.24 Total: -13.88 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -82.09 7.46 -74.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194458070.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.255 kcal (2) G-P(sol) polarization free energy of solvation -82.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds