Wall clock time and date at job start Wed Apr 1 2020 04:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00426 * 2 1 4 4 C 1.46905 * 110.99621 * 123.95244 * 2 1 3 5 5 H 1.09001 * 109.47089 * 166.25192 * 4 2 1 6 6 C 1.53000 * 109.47010 * 46.25596 * 4 2 1 7 7 N 1.46496 * 109.47253 * 54.93708 * 6 4 2 8 8 S 1.65599 * 120.00122 * 164.81323 * 7 6 4 9 9 O 1.42097 * 106.40461 * 178.53501 * 8 7 6 10 10 O 1.42107 * 106.39779 * 311.45330 * 8 7 6 11 11 N 1.65603 * 107.22193 * 64.99273 * 8 7 6 12 12 C 1.46498 * 120.00049 * 270.00316 * 11 8 7 13 13 C 1.46504 * 119.99648 * 90.00072 * 11 8 7 14 14 C 1.50702 * 109.46735 * 95.00367 * 13 11 8 15 15 H 1.08002 * 120.00147 * 359.97438 * 14 13 11 16 16 C 1.37880 * 119.99643 * 179.97438 * 14 13 11 17 17 N 1.31515 * 119.99864 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99748 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47103 * 90.00199 * 18 16 14 20 20 H 1.48502 * 109.47273 * 210.00016 * 18 16 14 21 21 H 1.48499 * 109.47551 * 330.00182 * 18 16 14 22 22 C 1.50701 * 109.47050 * 286.25442 * 4 2 1 23 23 C 1.33381 * 125.20229 * 226.43899 * 22 4 2 24 24 C 1.38434 * 114.91938 * 180.24990 * 23 22 4 25 25 C 1.33382 * 114.91655 * 359.49207 * 24 23 22 26 26 S 1.75879 * 109.59714 * 0.48118 * 25 24 23 27 27 H 1.08997 * 109.47280 * 303.43132 * 1 2 3 28 28 H 1.09009 * 109.46603 * 63.42903 * 1 2 3 29 29 H 1.08998 * 109.47175 * 183.42350 * 1 2 3 30 30 H 1.08997 * 109.46880 * 187.37336 * 3 2 1 31 31 H 1.09007 * 109.46752 * 307.37263 * 3 2 1 32 32 H 1.09001 * 109.47052 * 67.36871 * 3 2 1 33 33 H 1.09001 * 109.46709 * 174.93433 * 6 4 2 34 34 H 1.08996 * 109.46964 * 294.93013 * 6 4 2 35 35 H 0.97004 * 120.00045 * 344.80271 * 7 6 4 36 36 H 1.08997 * 109.46958 * 89.99500 * 12 11 8 37 37 H 1.08999 * 109.47213 * 210.00118 * 12 11 8 38 38 H 1.08999 * 109.47198 * 329.99680 * 12 11 8 39 39 H 1.08998 * 109.46642 * 214.99839 * 13 11 8 40 40 H 1.08999 * 109.46938 * 335.00406 * 13 11 8 41 41 H 0.96998 * 119.99522 * 179.97438 * 17 16 14 42 42 H 1.08004 * 122.54277 * 359.97438 * 23 22 4 43 43 H 1.08001 * 122.53701 * 179.73222 * 24 23 22 44 44 H 1.08007 * 125.20003 * 180.20495 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 1 3.0575 -0.9583 0.9860 6 6 1.2469 -2.0959 1.2470 7 7 1.3317 -2.8104 -0.0291 8 16 0.9488 -4.4198 -0.1040 9 8 1.0959 -4.8044 -1.4640 10 8 1.6480 -5.0486 0.9615 11 7 -0.6633 -4.5572 0.2491 12 6 -1.0961 -4.7419 1.6364 13 6 -1.6565 -4.4940 -0.8260 14 6 -2.0033 -5.8910 -1.2722 15 1 -1.5309 -6.7409 -0.8022 16 6 -2.9239 -6.0841 -2.2803 17 7 -3.4989 -5.0491 -2.8529 18 14 -3.3533 -7.8157 -2.8338 19 1 -4.4958 -8.3227 -2.0321 20 1 -3.7266 -7.7978 -4.2711 21 1 -2.1790 -8.7035 -2.6385 22 6 1.8040 0.0240 2.4067 23 6 2.7335 0.2075 3.3456 24 6 2.3260 0.9668 4.4291 25 6 1.0691 1.4085 4.3649 26 16 0.3212 0.8453 2.8760 27 1 -0.3634 0.5662 0.8576 28 1 -0.3633 0.4597 -0.9192 29 1 -0.3633 -1.0258 0.0614 30 1 3.0772 1.3452 -0.1319 31 1 1.5434 1.9342 -0.8168 32 1 1.7566 1.8523 0.9485 33 1 1.6965 -2.7022 2.0334 34 1 0.2011 -1.9055 1.4881 35 1 1.6121 -2.3408 -0.8302 36 1 -1.2647 -3.7685 2.0970 37 1 -2.0214 -5.3178 1.6547 38 1 -0.3243 -5.2769 2.1897 39 1 -2.5547 -3.9954 -0.4618 40 1 -1.2463 -3.9352 -1.6672 41 1 -4.1462 -5.1850 -3.5623 42 1 3.7272 -0.2085 3.2687 43 1 2.9778 1.1880 5.2614 44 1 0.5833 2.0152 5.1148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248024947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:59 Heat of formation + Delta-G solvation = -19.292911 kcal Electronic energy + Delta-G solvation = -27396.893309 eV Core-core repulsion = 23603.740559 eV Total energy + Delta-G solvation = -3793.152750 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.112 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.43130 -37.33791 -36.55119 -35.46339 -35.11033 -34.37193 -32.40822 -30.90832 -28.07155 -27.75052 -27.42544 -25.04347 -24.33420 -23.92694 -22.25956 -20.92212 -19.65885 -18.92147 -17.54311 -16.92548 -16.73981 -16.44707 -16.21125 -15.93462 -15.65821 -15.13336 -14.65792 -14.51930 -14.17250 -13.60238 -13.45852 -13.31905 -13.25111 -12.98145 -12.69535 -12.49385 -12.26786 -12.23774 -12.14303 -11.93282 -11.65965 -11.58883 -11.53283 -11.36764 -11.14035 -11.11183 -11.04240 -10.72735 -10.67071 -10.48846 -10.00851 -9.74432 -9.32003 -8.99404 -8.76653 -8.47802 -8.42425 -8.04408 -6.04392 -4.08011 0.71535 1.28090 1.37569 1.76808 2.49365 3.33111 3.39578 3.45371 3.51207 3.78062 4.16856 4.41237 4.47151 4.61163 4.82809 4.97649 5.04411 5.10984 5.18758 5.26519 5.31010 5.31423 5.42290 5.44652 5.51770 5.61514 5.70579 5.73637 5.85040 5.93517 5.99126 6.01650 6.06098 6.20561 6.31980 6.57703 6.73964 6.76943 7.18926 7.32995 7.46892 7.65075 7.93399 8.23033 8.94331 9.57080 11.04176 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.018004 B = 0.003108 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.853346 B = 9008.245847 C = 9215.244956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.528 5.528 3 C 0.018 3.982 4 C 0.147 3.853 5 H 0.111 0.889 6 C 0.128 3.872 7 N -1.127 6.127 8 S 2.782 3.218 9 O -0.962 6.962 10 O -1.000 7.000 11 N -0.997 5.997 12 C 0.094 3.906 13 C 0.258 3.742 14 C -0.529 4.529 15 H 0.060 0.940 16 C 0.062 3.938 17 N -0.896 5.896 18 Si 0.896 3.104 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.272 1.272 22 C -0.207 4.207 23 C -0.125 4.125 24 C -0.137 4.137 25 C -0.229 4.229 26 S 0.118 5.882 27 H 0.030 0.970 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.036 0.964 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.421 0.579 36 H 0.037 0.963 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.039 0.961 41 H 0.263 0.737 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.706 16.589 13.066 23.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 N -0.250 5.250 3 C -0.130 4.130 4 C 0.034 3.966 5 H 0.128 0.872 6 C 0.000 4.000 7 N -0.887 5.887 8 S 2.789 3.211 9 O -0.946 6.946 10 O -0.983 6.983 11 N -0.839 5.839 12 C -0.053 4.053 13 C 0.136 3.864 14 C -0.568 4.568 15 H 0.078 0.922 16 C -0.140 4.140 17 N -0.535 5.535 18 Si 0.724 3.276 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.327 4.327 23 C -0.156 4.156 24 C -0.167 4.167 25 C -0.364 4.364 26 S 0.382 5.618 27 H 0.048 0.952 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.256 0.744 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.158 0.842 43 H 0.154 0.846 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 8.827 15.774 11.808 21.591 hybrid contribution 0.557 0.007 0.937 1.091 sum 9.384 15.781 12.746 22.351 Atomic orbital electron populations 1.22854 0.86922 1.03716 1.00813 1.62257 1.08549 1.14393 1.39801 1.22504 1.00895 0.88483 1.01128 1.20676 1.01307 0.91315 0.83258 0.87156 1.21309 1.00118 0.92075 0.86497 1.56150 1.85098 1.31468 1.15987 1.01930 0.73174 0.72807 0.73189 1.93647 1.85917 1.80274 1.34749 1.93517 1.72459 1.74135 1.58230 1.57610 1.25227 1.87095 1.14007 1.21362 1.02091 1.00044 0.81756 1.19038 0.86617 0.97614 0.83103 1.21505 1.23594 0.92748 1.18964 0.92198 1.24926 0.95885 0.97279 0.95930 1.69917 1.28444 1.29575 1.25540 0.86519 0.78661 0.84551 0.77862 1.20664 1.21077 1.19701 1.25372 0.97426 1.07424 1.02485 1.20160 1.00669 1.01032 0.93782 1.20149 0.96082 1.00488 0.99997 1.26012 0.99548 1.07990 1.02833 1.84653 1.14430 1.48851 1.13905 0.95193 0.90245 0.89315 0.91296 0.91113 0.94555 0.89766 0.91609 0.74378 0.94493 0.90379 0.91598 0.94800 0.94344 0.92731 0.84184 0.84561 0.82289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 8.58 60.06 0.52 0.57 16 2 N -0.53 -5.51 4.38 -244.58 -1.07 -6.58 16 3 C 0.02 0.16 9.22 60.07 0.55 0.71 16 4 C 0.15 1.51 2.69 -68.86 -0.19 1.33 16 5 H 0.11 1.07 8.10 -51.93 -0.42 0.64 16 6 C 0.13 1.57 4.92 -4.04 -0.02 1.55 16 7 N -1.13 -16.57 5.43 -10.62 -0.06 -16.63 16 8 S 2.78 54.64 6.10 -107.50 -0.66 53.98 16 9 O -0.96 -23.05 17.11 -57.17 -0.98 -24.03 16 10 O -1.00 -20.64 16.21 -57.17 -0.93 -21.57 16 11 N -1.00 -20.34 3.23 -123.05 -0.40 -20.73 16 12 C 0.09 1.59 10.68 59.85 0.64 2.23 16 13 C 0.26 6.39 5.08 -5.19 -0.03 6.37 16 14 C -0.53 -14.85 9.38 -34.44 -0.32 -15.17 16 15 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.90 -26.05 13.29 55.43 0.74 -25.31 16 18 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 22 C -0.21 -2.00 3.76 -36.00 -0.14 -2.14 16 23 C -0.13 -1.11 10.03 -41.21 -0.41 -1.52 16 24 C -0.14 -1.13 10.18 -41.21 -0.42 -1.55 16 25 C -0.23 -1.91 11.23 29.04 0.33 -1.59 16 26 S 0.12 1.10 18.66 -107.50 -2.01 -0.90 16 27 H 0.03 0.31 4.55 -32.69 -0.15 0.16 16 28 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 29 H 0.09 1.10 5.46 -51.93 -0.28 0.82 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 32 H 0.04 0.32 5.75 -51.93 -0.30 0.03 16 33 H 0.08 1.03 7.75 -51.93 -0.40 0.63 16 34 H 0.07 0.79 6.51 -51.93 -0.34 0.46 16 35 H 0.42 5.85 8.09 -34.47 -0.28 5.57 16 36 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 38 H 0.07 1.06 7.02 -51.93 -0.36 0.70 16 39 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 40 H 0.04 1.01 7.61 -51.93 -0.40 0.62 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 43 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.16 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 376.32 15.07 5.67 5.67 Total: -1.00 -33.57 376.32 -10.57 -44.14 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.27 Total: 2.60 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 0.41 Total: -7.54 kcal Atomic # 7 Polarization: -68.46 SS G_CDS: -0.79 Total: -69.25 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -1.90 Total: -45.60 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 55.74 SS G_CDS: -2.66 Total: 53.08 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.57 -10.57 -44.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248024947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.844 kcal (2) G-P(sol) polarization free energy of solvation -33.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds