Wall clock time and date at job start Wed Apr 1 2020 04:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00426 * 2 1 4 4 C 1.46905 * 110.99621 * 123.95244 * 2 1 3 5 5 H 1.09001 * 109.47089 * 166.25192 * 4 2 1 6 6 C 1.53000 * 109.47010 * 46.25596 * 4 2 1 7 7 N 1.46496 * 109.47253 * 54.93708 * 6 4 2 8 8 S 1.65599 * 120.00122 * 164.81323 * 7 6 4 9 9 O 1.42097 * 106.40461 * 178.53501 * 8 7 6 10 10 O 1.42107 * 106.39779 * 311.45330 * 8 7 6 11 11 N 1.65603 * 107.22193 * 64.99273 * 8 7 6 12 12 C 1.46498 * 120.00049 * 270.00316 * 11 8 7 13 13 C 1.46504 * 119.99648 * 90.00072 * 11 8 7 14 14 C 1.50702 * 109.46735 * 95.00367 * 13 11 8 15 15 H 1.08002 * 120.00147 * 359.97438 * 14 13 11 16 16 C 1.37880 * 119.99643 * 179.97438 * 14 13 11 17 17 N 1.31515 * 119.99864 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99748 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47103 * 90.00199 * 18 16 14 20 20 H 1.48502 * 109.47273 * 210.00016 * 18 16 14 21 21 H 1.48499 * 109.47551 * 330.00182 * 18 16 14 22 22 C 1.50701 * 109.47050 * 286.25442 * 4 2 1 23 23 C 1.33381 * 125.20229 * 226.43899 * 22 4 2 24 24 C 1.38434 * 114.91938 * 180.24990 * 23 22 4 25 25 C 1.33382 * 114.91655 * 359.49207 * 24 23 22 26 26 S 1.75879 * 109.59714 * 0.48118 * 25 24 23 27 27 H 1.08997 * 109.47280 * 303.43132 * 1 2 3 28 28 H 1.09009 * 109.46603 * 63.42903 * 1 2 3 29 29 H 1.08998 * 109.47175 * 183.42350 * 1 2 3 30 30 H 1.08997 * 109.46880 * 187.37336 * 3 2 1 31 31 H 1.09007 * 109.46752 * 307.37263 * 3 2 1 32 32 H 1.09001 * 109.47052 * 67.36871 * 3 2 1 33 33 H 1.09001 * 109.46709 * 174.93433 * 6 4 2 34 34 H 1.08996 * 109.46964 * 294.93013 * 6 4 2 35 35 H 0.97004 * 120.00045 * 344.80271 * 7 6 4 36 36 H 1.08997 * 109.46958 * 89.99500 * 12 11 8 37 37 H 1.08999 * 109.47213 * 210.00118 * 12 11 8 38 38 H 1.08999 * 109.47198 * 329.99680 * 12 11 8 39 39 H 1.08998 * 109.46642 * 214.99839 * 13 11 8 40 40 H 1.08999 * 109.46938 * 335.00406 * 13 11 8 41 41 H 0.96998 * 119.99522 * 179.97438 * 17 16 14 42 42 H 1.08004 * 122.54277 * 359.97438 * 23 22 4 43 43 H 1.08001 * 122.53701 * 179.73222 * 24 23 22 44 44 H 1.08007 * 125.20003 * 180.20495 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 1 3.0575 -0.9583 0.9860 6 6 1.2469 -2.0959 1.2470 7 7 1.3317 -2.8104 -0.0291 8 16 0.9488 -4.4198 -0.1040 9 8 1.0959 -4.8044 -1.4640 10 8 1.6480 -5.0486 0.9615 11 7 -0.6633 -4.5572 0.2491 12 6 -1.0961 -4.7419 1.6364 13 6 -1.6565 -4.4940 -0.8260 14 6 -2.0033 -5.8910 -1.2722 15 1 -1.5309 -6.7409 -0.8022 16 6 -2.9239 -6.0841 -2.2803 17 7 -3.4989 -5.0491 -2.8529 18 14 -3.3533 -7.8157 -2.8338 19 1 -4.4958 -8.3227 -2.0321 20 1 -3.7266 -7.7978 -4.2711 21 1 -2.1790 -8.7035 -2.6385 22 6 1.8040 0.0240 2.4067 23 6 2.7335 0.2075 3.3456 24 6 2.3260 0.9668 4.4291 25 6 1.0691 1.4085 4.3649 26 16 0.3212 0.8453 2.8760 27 1 -0.3634 0.5662 0.8576 28 1 -0.3633 0.4597 -0.9192 29 1 -0.3633 -1.0258 0.0614 30 1 3.0772 1.3452 -0.1319 31 1 1.5434 1.9342 -0.8168 32 1 1.7566 1.8523 0.9485 33 1 1.6965 -2.7022 2.0334 34 1 0.2011 -1.9055 1.4881 35 1 1.6121 -2.3408 -0.8302 36 1 -1.2647 -3.7685 2.0970 37 1 -2.0214 -5.3178 1.6547 38 1 -0.3243 -5.2769 2.1897 39 1 -2.5547 -3.9954 -0.4618 40 1 -1.2463 -3.9352 -1.6672 41 1 -4.1462 -5.1850 -3.5623 42 1 3.7272 -0.2085 3.2687 43 1 2.9778 1.1880 5.2614 44 1 0.5833 2.0152 5.1148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000248024947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:58 Heat of formation + Delta-G solvation = -44.528854 kcal Electronic energy + Delta-G solvation = -27397.987622 eV Core-core repulsion = 23603.740559 eV Total energy + Delta-G solvation = -3794.247063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.112 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.23503 -38.26241 -38.01897 -37.19369 -36.82291 -35.47934 -34.48230 -31.70402 -29.64791 -28.90580 -28.21706 -26.76260 -25.24366 -24.61272 -24.18501 -21.73605 -20.51498 -20.17719 -19.02452 -18.45236 -18.30146 -17.72617 -17.42998 -17.01398 -16.75181 -16.44621 -16.12507 -15.50400 -15.24531 -15.03243 -14.92120 -14.50290 -14.08623 -14.04070 -13.89886 -13.64676 -13.61626 -13.32074 -13.19832 -13.13715 -13.10908 -13.03155 -12.90284 -12.79960 -12.54035 -12.46801 -12.39983 -12.32392 -12.19715 -11.94562 -11.73700 -11.41528 -10.59287 -10.50065 -9.79801 -9.70524 -9.47066 -9.21305 -8.18821 -6.30246 -0.30701 0.07276 0.69073 1.11075 1.39539 1.42066 1.52556 1.84314 2.07448 2.41717 2.65796 2.96355 3.12154 3.44078 3.69426 3.72500 4.08286 4.13227 4.23752 4.27421 4.42265 4.43963 4.62139 4.63413 4.68111 4.72506 4.76996 4.77779 4.85619 4.92733 5.06071 5.08356 5.09039 5.20308 5.22614 5.38389 5.48933 5.58092 5.71505 5.88512 5.93244 5.99484 6.12033 6.22465 6.77897 7.38391 8.88564 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.018004 B = 0.003108 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.853346 B = 9008.245847 C = 9215.244956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 N -0.537 5.537 3 C 0.021 3.979 4 C 0.153 3.847 5 H 0.119 0.881 6 C 0.122 3.878 7 N -1.110 6.110 8 S 2.799 3.201 9 O -1.010 7.010 10 O -1.009 7.009 11 N -1.002 6.002 12 C 0.088 3.912 13 C 0.275 3.725 14 C -0.550 4.550 15 H 0.051 0.949 16 C 0.013 3.987 17 N -0.922 5.922 18 Si 0.955 3.045 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.275 1.275 22 C -0.219 4.219 23 C -0.122 4.122 24 C -0.143 4.143 25 C -0.226 4.226 26 S 0.093 5.907 27 H 0.039 0.961 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.036 0.964 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.427 0.573 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.029 0.971 40 H 0.017 0.983 41 H 0.267 0.733 42 H 0.155 0.845 43 H 0.158 0.842 44 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.330 17.320 14.540 24.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 N -0.259 5.259 3 C -0.127 4.127 4 C 0.041 3.959 5 H 0.137 0.863 6 C -0.005 4.005 7 N -0.874 5.874 8 S 2.807 3.193 9 O -0.994 6.994 10 O -0.993 6.993 11 N -0.844 5.844 12 C -0.058 4.058 13 C 0.151 3.849 14 C -0.590 4.590 15 H 0.069 0.931 16 C -0.187 4.187 17 N -0.562 5.562 18 Si 0.780 3.220 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.200 1.200 22 C -0.339 4.339 23 C -0.154 4.154 24 C -0.173 4.173 25 C -0.361 4.361 26 S 0.357 5.643 27 H 0.056 0.944 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.263 0.737 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.047 0.953 40 H 0.035 0.965 41 H 0.076 0.924 42 H 0.172 0.828 43 H 0.175 0.825 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 9.451 16.505 13.308 23.213 hybrid contribution 0.423 -0.123 0.586 0.733 sum 9.875 16.382 13.894 23.642 Atomic orbital electron populations 1.22801 0.87509 1.02708 1.01289 1.62276 1.08152 1.15421 1.40042 1.22513 1.01321 0.87566 1.01310 1.20566 1.01284 0.90211 0.83844 0.86283 1.21539 1.00925 0.93037 0.84973 1.55664 1.84402 1.29864 1.17454 1.01177 0.72754 0.73608 0.71800 1.93577 1.86493 1.81922 1.37402 1.93498 1.72454 1.75170 1.58154 1.57480 1.24659 1.87762 1.14528 1.21584 1.02008 1.02115 0.80081 1.18580 0.87037 0.95671 0.83615 1.21855 1.23783 0.93952 1.19389 0.93107 1.25719 0.95854 1.01071 0.96028 1.70003 1.28889 1.31354 1.25962 0.85606 0.78590 0.80000 0.77825 1.19060 1.20390 1.20015 1.25236 0.97785 1.08305 1.02561 1.20436 1.01118 1.00387 0.93448 1.20421 0.96345 1.00117 1.00422 1.26270 0.99604 1.07841 1.02407 1.84700 1.15006 1.49428 1.15164 0.94365 0.90262 0.91061 0.90482 0.90709 0.94512 0.89358 0.91291 0.73660 0.91112 0.91062 0.90702 0.95303 0.96465 0.92402 0.82751 0.82480 0.80487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 8.58 127.69 1.10 1.22 16 2 N -0.54 -10.64 4.38 -927.70 -4.07 -14.71 16 3 C 0.02 0.34 9.22 127.69 1.18 1.52 16 4 C 0.15 2.93 2.69 44.17 0.12 3.05 16 5 H 0.12 2.07 8.10 -2.39 -0.02 2.05 16 6 C 0.12 2.86 4.92 86.38 0.43 3.29 16 7 N -1.11 -32.23 5.43 -187.50 -1.02 -33.24 16 8 S 2.80 110.38 6.10 -56.49 -0.34 110.04 16 9 O -1.01 -49.54 17.11 -128.00 -2.19 -51.73 16 10 O -1.01 -41.06 16.21 -128.00 -2.07 -43.14 16 11 N -1.00 -41.08 3.23 -543.23 -1.75 -42.83 16 12 C 0.09 2.89 10.68 127.77 1.36 4.25 16 13 C 0.27 13.88 5.08 85.63 0.43 14.31 16 14 C -0.55 -31.39 9.38 25.60 0.24 -31.14 16 15 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 16 C 0.01 0.73 5.46 84.66 0.46 1.19 16 17 N -0.92 -54.11 13.29 21.45 0.28 -53.83 16 18 Si 0.95 44.95 29.54 68.60 2.03 46.97 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 C -0.22 -3.83 3.76 24.59 0.09 -3.74 16 23 C -0.12 -1.86 10.03 21.22 0.21 -1.64 16 24 C -0.14 -1.96 10.18 21.22 0.22 -1.75 16 25 C -0.23 -3.25 11.23 66.72 0.75 -2.50 16 26 S 0.09 1.61 18.66 -56.49 -1.05 0.56 16 27 H 0.04 0.76 4.55 -14.62 -0.07 0.69 16 28 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.07 1.77 5.46 -2.39 -0.01 1.75 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.14 8.11 -2.38 -0.02 1.12 16 32 H 0.04 0.60 5.75 -2.39 -0.01 0.59 16 33 H 0.09 2.02 7.75 -2.39 -0.02 2.00 16 34 H 0.07 1.59 6.51 -2.39 -0.02 1.58 16 35 H 0.43 11.78 8.09 -96.74 -0.78 11.00 16 36 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 38 H 0.07 2.33 7.02 -2.39 -0.02 2.31 16 39 H 0.03 1.47 8.11 -2.39 -0.02 1.45 16 40 H 0.02 0.94 7.61 -2.39 -0.02 0.92 16 41 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 42 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 43 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 44 H 0.18 1.80 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -71.51 376.32 -3.42 -74.93 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.18 Total: 18.93 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 6.59 Total: -11.95 kcal Atomic # 7 Polarization: -138.06 SS G_CDS: -6.55 Total: -144.61 kcal Atomic # 8 Polarization: -90.60 SS G_CDS: -4.26 Total: -94.87 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: 111.99 SS G_CDS: -1.40 Total: 110.59 kcal Total: -71.51 -3.42 -74.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248024947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.403 kcal (2) G-P(sol) polarization free energy of solvation -71.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds