Wall clock time and date at job start Wed Apr 1 2020 04:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35903 * 117.00217 * 2 1 4 4 C 1.38800 * 120.01868 * 0.02562 * 3 2 1 5 5 C 1.38168 * 120.07341 * 179.97438 * 4 3 2 6 6 C 1.38177 * 120.11627 * 359.72292 * 5 4 3 7 7 C 1.38839 * 120.04866 * 0.55389 * 6 5 4 8 8 N 1.40195 * 120.04035 * 179.71877 * 7 6 5 9 9 C 1.37863 * 126.53453 * 129.41015 * 8 7 6 10 10 C 1.34391 * 106.94612 * 180.26647 * 9 8 7 11 11 N 1.34375 * 108.40802 * 359.97438 * 10 9 8 12 12 C 1.31271 * 109.35688 * 0.02562 * 11 10 9 13 13 S 1.76201 * 125.81913 * 180.02562 * 12 11 10 14 14 C 1.81004 * 100.00071 * 359.97134 * 13 12 11 15 15 C 1.50700 * 109.47093 * 179.97438 * 14 13 12 16 16 O 1.21293 * 120.00200 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99692 * 179.97438 * 15 14 13 18 18 C 1.46500 * 120.00385 * 0.02562 * 17 15 14 19 19 C 1.37099 * 119.99721 * 180.02562 * 17 15 14 20 20 H 1.08001 * 120.00367 * 24.39585 * 19 17 15 21 21 C 1.38950 * 120.00193 * 204.38863 * 19 17 15 22 22 N 1.31419 * 119.99866 * 12.65844 * 21 19 17 23 23 Si 1.86797 * 120.00455 * 192.65389 * 21 19 17 24 24 H 1.48500 * 109.47189 * 60.00118 * 23 21 19 25 25 H 1.48501 * 109.47476 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46860 * 300.00499 * 23 21 19 27 27 C 1.38593 * 120.02045 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47213 * 60.00129 * 1 2 3 29 29 H 1.08995 * 109.46965 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46999 * 299.99698 * 1 2 3 31 31 H 1.08001 * 119.96768 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.93864 * 180.02562 * 5 4 3 33 33 H 1.08002 * 119.97458 * 180.30082 * 6 5 4 34 34 H 1.07998 * 126.52284 * 0.24206 * 9 8 7 35 35 H 1.08004 * 125.79209 * 180.02562 * 10 9 8 36 36 H 1.08997 * 109.46912 * 300.00390 * 14 13 12 37 37 H 1.09003 * 109.46695 * 60.00200 * 14 13 12 38 38 H 1.08998 * 109.47491 * 85.86699 * 18 17 15 39 39 H 1.09000 * 109.47417 * 205.86938 * 18 17 15 40 40 H 1.08997 * 109.46988 * 325.86568 * 18 17 15 41 41 H 0.96998 * 120.00270 * 179.97438 * 22 21 19 42 42 H 1.07993 * 120.06545 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2905 2.3752 0.0005 5 6 1.9166 3.6069 0.0011 6 6 3.2963 3.6833 0.0069 7 6 4.0569 2.5218 0.0005 8 7 5.4567 2.5995 0.0004 9 6 6.3154 1.9384 0.8525 10 6 7.5634 2.3006 0.5097 11 7 7.4879 3.1585 -0.5219 12 6 6.2283 3.3480 -0.8390 13 16 5.6354 4.3906 -2.1297 14 6 7.2062 5.0212 -2.7709 15 6 6.9394 5.9622 -3.9174 16 8 5.7993 6.1849 -4.2664 17 7 7.9675 6.5569 -4.5543 18 6 9.3445 6.2883 -4.1324 19 6 7.7247 7.4134 -5.5969 20 1 6.7736 7.9200 -5.6694 21 6 8.7022 7.6297 -6.5604 22 7 9.7520 6.8414 -6.6199 23 14 8.5242 9.0410 -7.7712 24 1 8.4620 10.3255 -7.0286 25 1 9.6912 9.0556 -8.6895 26 1 7.2776 8.8635 -8.5584 27 6 3.4300 1.2839 -0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2120 2.3185 0.0005 32 1 1.3266 4.5115 0.0019 33 1 3.7833 4.6472 0.0122 34 1 6.0380 1.2591 1.6450 35 1 8.4725 1.9594 0.9824 36 1 7.7345 5.5528 -1.9794 37 1 7.8169 4.1883 -3.1195 38 1 9.7089 5.3905 -4.6316 39 1 9.9778 7.1345 -4.3989 40 1 9.3714 6.1402 -3.0529 41 1 10.4343 6.9922 -7.2927 42 1 4.0195 0.3790 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263816321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:58 Heat of formation + Delta-G solvation = 40.750618 kcal Electronic energy + Delta-G solvation = -26720.675062 eV Core-core repulsion = 22794.682043 eV Total energy + Delta-G solvation = -3925.993019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.09041 -40.34965 -38.40687 -37.86680 -34.72972 -33.94677 -31.77053 -31.13223 -30.00941 -29.23218 -28.93327 -27.65999 -26.14160 -24.24021 -23.55234 -23.08026 -21.36101 -21.12274 -19.53985 -18.85671 -17.10536 -16.89414 -16.73421 -16.42998 -16.13865 -16.04528 -15.71417 -15.26836 -14.80227 -14.46101 -14.34723 -14.22560 -14.02627 -13.75893 -13.71949 -13.07686 -12.92311 -12.64624 -12.61478 -12.37262 -12.15185 -11.62182 -11.54601 -11.39197 -11.33561 -11.26216 -10.86604 -10.42241 -10.37139 -10.36786 -10.14188 -10.06223 -9.33763 -9.02702 -9.01900 -8.57550 -8.56280 -7.71633 -7.15828 -6.35348 -3.92328 0.65374 1.03116 1.43747 1.93575 2.46332 2.59863 3.04241 3.05763 3.18019 3.24266 3.28282 3.33147 3.79220 4.12457 4.38990 4.56864 4.65975 4.72496 4.75073 4.83735 4.85829 4.96071 5.06814 5.08663 5.09334 5.24246 5.43390 5.51200 5.65694 5.71734 5.81021 5.84993 5.98266 6.02832 6.15804 6.21230 6.37947 6.64459 6.84392 6.92077 7.04033 7.19493 7.54130 7.86658 8.06483 8.41924 9.11378 9.34811 9.88413 10.69328 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016961 B = 0.002410 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.472094 B =11615.761770 C =12768.553053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.141 3.859 4 C -0.203 4.203 5 C -0.058 4.058 6 C -0.143 4.143 7 C 0.161 3.839 8 N -0.407 5.407 9 C -0.053 4.053 10 C -0.011 4.011 11 N -0.487 5.487 12 C 0.195 3.805 13 S 0.057 5.943 14 C -0.120 4.120 15 C 0.458 3.542 16 O -0.579 6.579 17 N -0.434 5.434 18 C 0.108 3.892 19 C -0.307 4.307 20 H 0.100 0.900 21 C 0.032 3.968 22 N -0.878 5.878 23 Si 0.929 3.071 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.272 1.272 27 C -0.148 4.148 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.177 0.823 35 H 0.175 0.825 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.029 0.971 41 H 0.269 0.731 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.762 -11.913 17.089 24.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.095 3.905 4 C -0.222 4.222 5 C -0.077 4.077 6 C -0.163 4.163 7 C 0.070 3.930 8 N -0.090 5.090 9 C -0.185 4.185 10 C -0.159 4.159 11 N -0.209 5.209 12 C -0.174 4.174 13 S 0.287 5.713 14 C -0.272 4.272 15 C 0.244 3.756 16 O -0.465 6.465 17 N -0.152 5.152 18 C -0.036 4.036 19 C -0.436 4.436 20 H 0.117 0.883 21 C -0.172 4.172 22 N -0.517 5.517 23 Si 0.756 3.244 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.197 1.197 27 C -0.168 4.168 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.152 0.848 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.194 0.806 35 H 0.192 0.808 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.048 0.952 41 H 0.080 0.920 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.520 -11.405 16.022 23.866 hybrid contribution 0.787 -0.140 0.292 0.851 sum -12.733 -11.545 16.314 23.697 Atomic orbital electron populations 1.23110 0.77912 1.04210 1.01613 1.86076 1.21721 1.26470 1.88578 1.18619 0.91381 0.84536 0.95964 1.21370 1.00476 0.92158 1.08213 1.20852 0.93496 0.97589 0.95745 1.21139 0.94124 0.97870 1.03176 1.17307 0.80453 0.93725 1.01520 1.42940 1.03912 1.35783 1.26413 1.22832 0.89977 1.05106 1.00560 1.22341 0.96704 0.99614 0.97288 1.70901 1.15415 1.18831 1.15710 1.26211 0.88660 1.01967 1.00529 1.86209 1.08914 1.47758 1.28425 1.23702 0.98244 1.03345 1.01902 1.19195 0.86267 0.84121 0.86049 1.90545 1.21132 1.65817 1.68963 1.43462 1.04514 1.38342 1.28926 1.21563 0.84204 1.03004 0.94828 1.19621 1.02848 1.19419 1.01663 0.88260 1.25391 0.96036 0.98263 0.97520 1.69994 1.10939 1.35849 1.34922 0.85950 0.77887 0.80900 0.79681 1.19817 1.20905 1.19700 1.20124 0.92073 0.97102 1.07483 0.92286 0.88031 0.92459 0.84751 0.84343 0.84261 0.80556 0.80786 0.87497 0.87320 0.92673 0.90457 0.95211 0.92040 0.84458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.97 10.49 -19.44 -0.20 -3.18 16 3 C 0.14 1.46 6.68 -39.24 -0.26 1.19 16 4 C -0.20 -1.80 9.04 -39.40 -0.36 -2.15 16 5 C -0.06 -0.56 10.03 -39.63 -0.40 -0.95 16 6 C -0.14 -1.72 8.87 -39.38 -0.35 -2.07 16 7 C 0.16 2.08 5.85 -83.62 -0.49 1.60 16 8 N -0.41 -5.84 2.91 -60.76 -0.18 -6.02 16 9 C -0.05 -0.65 11.32 -16.20 -0.18 -0.83 16 10 C -0.01 -0.15 11.84 -17.80 -0.21 -0.36 16 11 N -0.49 -8.28 10.60 -13.38 -0.14 -8.42 16 12 C 0.19 3.29 7.81 -88.49 -0.69 2.60 16 13 S 0.06 1.05 19.80 -107.50 -2.13 -1.07 16 14 C -0.12 -2.41 4.29 36.01 0.15 -2.26 16 15 C 0.46 11.39 7.65 -10.99 -0.08 11.30 16 16 O -0.58 -16.08 15.57 5.55 0.09 -16.00 16 17 N -0.43 -11.29 3.01 -122.20 -0.37 -11.65 16 18 C 0.11 2.45 8.44 59.85 0.51 2.95 16 19 C -0.31 -8.59 9.24 -14.93 -0.14 -8.73 16 20 H 0.10 2.88 7.45 -52.49 -0.39 2.49 16 21 C 0.03 0.84 5.04 -17.46 -0.09 0.75 16 22 N -0.88 -23.48 10.83 55.50 0.60 -22.88 16 23 Si 0.93 20.71 29.57 -169.99 -5.03 15.68 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 C -0.15 -1.71 9.65 -39.26 -0.38 -2.09 16 28 H 0.06 0.27 7.66 -51.93 -0.40 -0.12 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 31 H 0.13 0.82 6.29 -52.49 -0.33 0.49 16 32 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.14 1.74 7.59 -52.49 -0.40 1.34 16 34 H 0.18 1.51 8.06 -52.49 -0.42 1.08 16 35 H 0.17 1.78 8.06 -52.48 -0.42 1.35 16 36 H 0.11 2.00 7.41 -51.92 -0.38 1.62 16 37 H 0.11 2.14 8.11 -51.91 -0.42 1.72 16 38 H 0.05 1.28 7.83 -51.93 -0.41 0.88 16 39 H 0.08 1.83 6.80 -51.93 -0.35 1.47 16 40 H 0.03 0.57 6.61 -51.93 -0.34 0.23 16 41 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 42 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 371.76 15.07 5.60 5.60 Total: -1.00 -33.65 371.76 -8.81 -42.46 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.07 Total: 3.38 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -1.98 Total: 2.10 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.09 Total: -48.98 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.12 Total: -19.17 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.13 Total: -1.07 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.65 -8.81 -42.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263816321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.209 kcal (2) G-P(sol) polarization free energy of solvation -33.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds