Wall clock time and date at job start Wed Apr 1 2020 04:19:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.35903 * 117.00217 * 2 1
4 4 C 1.38800 * 120.01868 * 0.02562 * 3 2 1
5 5 C 1.38168 * 120.07341 * 179.97438 * 4 3 2
6 6 C 1.38177 * 120.11627 * 359.72292 * 5 4 3
7 7 C 1.38839 * 120.04866 * 0.55389 * 6 5 4
8 8 N 1.40195 * 120.04035 * 179.71877 * 7 6 5
9 9 C 1.37863 * 126.53453 * 129.41015 * 8 7 6
10 10 C 1.34391 * 106.94612 * 180.26647 * 9 8 7
11 11 N 1.34375 * 108.40802 * 359.97438 * 10 9 8
12 12 C 1.31271 * 109.35688 * 0.02562 * 11 10 9
13 13 S 1.76201 * 125.81913 * 180.02562 * 12 11 10
14 14 C 1.81004 * 100.00071 * 359.97134 * 13 12 11
15 15 C 1.50700 * 109.47093 * 179.97438 * 14 13 12
16 16 O 1.21293 * 120.00200 * 0.02562 * 15 14 13
17 17 N 1.34773 * 119.99692 * 179.97438 * 15 14 13
18 18 C 1.46500 * 120.00385 * 0.02562 * 17 15 14
19 19 C 1.37099 * 119.99721 * 180.02562 * 17 15 14
20 20 H 1.08001 * 120.00367 * 24.39585 * 19 17 15
21 21 C 1.38950 * 120.00193 * 204.38863 * 19 17 15
22 22 N 1.31419 * 119.99866 * 12.65844 * 21 19 17
23 23 Si 1.86797 * 120.00455 * 192.65389 * 21 19 17
24 24 H 1.48500 * 109.47189 * 60.00118 * 23 21 19
25 25 H 1.48501 * 109.47476 * 180.02562 * 23 21 19
26 26 H 1.48503 * 109.46860 * 300.00499 * 23 21 19
27 27 C 1.38593 * 120.02045 * 180.02562 * 3 2 1
28 28 H 1.09003 * 109.47213 * 60.00129 * 1 2 3
29 29 H 1.08995 * 109.46965 * 179.97438 * 1 2 3
30 30 H 1.08996 * 109.46999 * 299.99698 * 1 2 3
31 31 H 1.08001 * 119.96768 * 359.97438 * 4 3 2
32 32 H 1.07998 * 119.93864 * 180.02562 * 5 4 3
33 33 H 1.08002 * 119.97458 * 180.30082 * 6 5 4
34 34 H 1.07998 * 126.52284 * 0.24206 * 9 8 7
35 35 H 1.08004 * 125.79209 * 180.02562 * 10 9 8
36 36 H 1.08997 * 109.46912 * 300.00390 * 14 13 12
37 37 H 1.09003 * 109.46695 * 60.00200 * 14 13 12
38 38 H 1.08998 * 109.47491 * 85.86699 * 18 17 15
39 39 H 1.09000 * 109.47417 * 205.86938 * 18 17 15
40 40 H 1.08997 * 109.46988 * 325.86568 * 18 17 15
41 41 H 0.96998 * 120.00270 * 179.97438 * 22 21 19
42 42 H 1.07993 * 120.06545 * 359.97438 * 27 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0460 1.2109 0.0000
4 6 1.2905 2.3752 0.0005
5 6 1.9166 3.6069 0.0011
6 6 3.2963 3.6833 0.0069
7 6 4.0569 2.5218 0.0005
8 7 5.4567 2.5995 0.0004
9 6 6.3154 1.9384 0.8525
10 6 7.5634 2.3006 0.5097
11 7 7.4879 3.1585 -0.5219
12 6 6.2283 3.3480 -0.8390
13 16 5.6354 4.3906 -2.1297
14 6 7.2062 5.0212 -2.7709
15 6 6.9394 5.9622 -3.9174
16 8 5.7993 6.1849 -4.2664
17 7 7.9675 6.5569 -4.5543
18 6 9.3445 6.2883 -4.1324
19 6 7.7247 7.4134 -5.5969
20 1 6.7736 7.9200 -5.6694
21 6 8.7022 7.6297 -6.5604
22 7 9.7520 6.8414 -6.6199
23 14 8.5242 9.0410 -7.7712
24 1 8.4620 10.3255 -7.0286
25 1 9.6912 9.0556 -8.6895
26 1 7.2776 8.8635 -8.5584
27 6 3.4300 1.2839 -0.0005
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3633 -1.0276 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 0.2120 2.3185 0.0005
32 1 1.3266 4.5115 0.0019
33 1 3.7833 4.6472 0.0122
34 1 6.0380 1.2591 1.6450
35 1 8.4725 1.9594 0.9824
36 1 7.7345 5.5528 -1.9794
37 1 7.8169 4.1883 -3.1195
38 1 9.7089 5.3905 -4.6316
39 1 9.9778 7.1345 -4.3989
40 1 9.3714 6.1402 -3.0529
41 1 10.4343 6.9922 -7.2927
42 1 4.0195 0.3790 -0.0005
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000263816321.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:19:58
Heat of formation + Delta-G solvation = 21.391974 kcal
Electronic energy + Delta-G solvation = -26721.514516 eV
Core-core repulsion = 22794.682043 eV
Total energy + Delta-G solvation = -3926.832472 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-43.15436 -41.09046 -40.38327 -38.63372 -36.75583 -34.91542 -33.80115 -31.90174
-31.30998 -30.60586 -29.98323 -28.16862 -28.06275 -26.21818 -24.48182 -23.93784
-22.45301 -22.15872 -21.02773 -20.05865 -18.95007 -18.07213 -17.88705 -17.51614
-17.25430 -16.94420 -16.74589 -16.70361 -16.40456 -16.09083 -15.87601 -15.27433
-15.10733 -14.70255 -14.61854 -14.37206 -14.30742 -14.20380 -13.77748 -13.46934
-13.24950 -13.21619 -13.15327 -12.94411 -12.65507 -12.41422 -12.24383 -12.13174
-12.03930 -11.63274 -11.37694 -11.20802 -11.02720 -10.57939 -10.48797 -9.91197
-9.74949 -9.36753 -8.47903 -8.37869 -6.04224 -0.21210 0.06864 0.24887
0.89307 1.06956 1.38477 1.42126 1.53231 1.62446 1.87393 1.94917
2.26795 2.34636 2.52645 2.95877 3.04530 3.66491 3.71310 3.85708
3.94146 3.98939 4.06204 4.09165 4.23552 4.33366 4.36470 4.41524
4.41957 4.53047 4.62697 4.64021 4.77643 4.89270 4.96730 5.07500
5.25128 5.29916 5.30768 5.38639 5.42217 5.63218 6.00805 6.02027
6.29649 6.38635 6.76187 7.07096 7.34153 7.88115 8.65475
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.016961 B = 0.002410 C = 0.002192
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1650.472094 B =11615.761770 C =12768.553053
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.015 3.985
2 O -0.331 6.331
3 C 0.139 3.861
4 C -0.193 4.193
5 C -0.056 4.056
6 C -0.161 4.161
7 C 0.137 3.863
8 N -0.403 5.403
9 C -0.034 4.034
10 C -0.029 4.029
11 N -0.510 5.510
12 C 0.167 3.833
13 S 0.042 5.958
14 C -0.104 4.104
15 C 0.450 3.550
16 O -0.615 6.615
17 N -0.449 5.449
18 C 0.118 3.882
19 C -0.346 4.346
20 H 0.077 0.923
21 C -0.002 4.002
22 N -0.894 5.894
23 Si 0.995 3.005
24 H -0.265 1.265
25 H -0.270 1.270
26 H -0.275 1.275
27 C -0.157 4.157
28 H 0.067 0.933
29 H 0.120 0.880
30 H 0.073 0.927
31 H 0.167 0.833
32 H 0.164 0.836
33 H 0.126 0.874
34 H 0.216 0.784
35 H 0.204 0.796
36 H 0.120 0.880
37 H 0.111 0.889
38 H 0.045 0.955
39 H 0.064 0.936
40 H 0.064 0.936
41 H 0.276 0.724
42 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.770 -12.869 18.362 26.313
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 O -0.244 6.244
3 C 0.092 3.908
4 C -0.212 4.212
5 C -0.075 4.075
6 C -0.181 4.181
7 C 0.046 3.954
8 N -0.086 5.086
9 C -0.166 4.166
10 C -0.177 4.177
11 N -0.233 5.233
12 C -0.201 4.201
13 S 0.271 5.729
14 C -0.256 4.256
15 C 0.238 3.762
16 O -0.503 6.503
17 N -0.167 5.167
18 C -0.025 4.025
19 C -0.474 4.474
20 H 0.095 0.905
21 C -0.204 4.204
22 N -0.532 5.532
23 Si 0.817 3.183
24 H -0.189 1.189
25 H -0.194 1.194
26 H -0.201 1.201
27 C -0.177 4.177
28 H 0.085 0.915
29 H 0.138 0.862
30 H 0.092 0.908
31 H 0.184 0.816
32 H 0.181 0.819
33 H 0.144 0.856
34 H 0.232 0.768
35 H 0.221 0.779
36 H 0.138 0.862
37 H 0.129 0.871
38 H 0.064 0.936
39 H 0.083 0.917
40 H 0.082 0.918
41 H 0.086 0.914
42 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -14.523 -12.377 17.308 25.762
hybrid contribution 0.981 -0.010 0.015 0.981
sum -13.542 -12.387 17.324 25.237
Atomic orbital electron populations
1.23447 0.75714 1.05949 1.02771 1.86066 1.24009 1.26055 1.88305
1.18736 0.91163 0.85479 0.95382 1.21720 1.02044 0.91181 1.06241
1.21174 0.92646 0.99074 0.94586 1.21205 0.95342 0.97120 1.04431
1.17507 0.79821 0.94605 1.03444 1.43085 1.04737 1.34947 1.25811
1.23530 0.89291 1.03862 0.99949 1.22918 0.98509 0.99402 0.96865
1.70818 1.15698 1.19803 1.16987 1.25698 0.89288 1.03679 1.01459
1.86106 1.07867 1.49020 1.29871 1.23381 0.99552 1.02293 1.00356
1.19868 0.85549 0.84049 0.86744 1.90504 1.22546 1.67036 1.70248
1.43719 1.05851 1.38349 1.28823 1.21508 0.82422 1.01837 0.96758
1.19631 1.02878 1.21282 1.03564 0.90526 1.26191 0.95307 1.00263
0.98648 1.70066 1.11181 1.36541 1.35368 0.84985 0.77942 0.77931
0.77417 1.18936 1.19422 1.20068 1.20170 0.92985 0.96543 1.07996
0.91480 0.86222 0.90828 0.81552 0.81880 0.85605 0.76779 0.77887
0.86186 0.87070 0.93598 0.91704 0.91783 0.91447 0.84327
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.11 9.81 113.37 1.11 1.23 16
2 O -0.33 -5.54 10.49 -92.46 -0.97 -6.51 16
3 C 0.14 2.62 6.68 22.49 0.15 2.77 16
4 C -0.19 -2.94 9.04 22.39 0.20 -2.74 16
5 C -0.06 -0.99 10.03 22.24 0.22 -0.76 16
6 C -0.16 -3.84 8.87 22.40 0.20 -3.64 16
7 C 0.14 3.48 5.85 38.07 0.22 3.71 16
8 N -0.40 -11.38 2.91 -346.13 -1.01 -12.39 16
9 C -0.03 -0.77 11.32 82.86 0.94 0.16 16
10 C -0.03 -0.74 11.84 83.42 0.99 0.25 16
11 N -0.51 -17.18 10.60 -196.24 -2.08 -19.26 16
12 C 0.17 5.69 7.81 179.61 1.40 7.09 16
13 S 0.04 1.59 19.80 -56.49 -1.12 0.47 16
14 C -0.10 -4.27 4.29 71.24 0.31 -3.97 16
15 C 0.45 23.14 7.65 87.66 0.67 23.81 16
16 O -0.62 -35.61 15.57 -3.07 -0.05 -35.65 16
17 N -0.45 -24.00 3.01 -658.90 -1.98 -25.99 16
18 C 0.12 5.40 8.44 127.77 1.08 6.48 16
19 C -0.35 -19.90 9.24 84.04 0.78 -19.12 16
20 H 0.08 4.65 7.45 -2.91 -0.02 4.63 16
21 C 0.00 -0.09 5.04 84.93 0.43 0.34 16
22 N -0.89 -47.91 10.83 21.66 0.23 -47.67 16
23 Si 0.99 42.54 29.57 68.60 2.03 44.57 16
24 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16
25 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16
26 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16
27 C -0.16 -3.48 9.65 22.48 0.22 -3.26 16
28 H 0.07 0.42 7.66 -2.39 -0.02 0.40 16
29 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16
30 H 0.07 0.33 7.66 -2.39 -0.02 0.31 16
31 H 0.17 1.39 6.29 -2.91 -0.02 1.37 16
32 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16
33 H 0.13 3.28 7.59 -2.91 -0.02 3.25 16
34 H 0.22 2.99 8.06 -2.91 -0.02 2.96 16
35 H 0.20 3.67 8.06 -2.91 -0.02 3.65 16
36 H 0.12 4.54 7.41 -2.40 -0.02 4.52 16
37 H 0.11 4.47 8.11 -2.39 -0.02 4.45 16
38 H 0.05 2.16 7.83 -2.39 -0.02 2.14 16
39 H 0.06 3.10 6.80 -2.39 -0.02 3.08 16
40 H 0.06 2.44 6.61 -2.39 -0.02 2.43 16
41 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16
42 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16
Total: -1.00 -75.15 371.76 5.02 -70.13
By element:
Atomic # 1 Polarization: 18.91 SS G_CDS: 1.05 Total: 19.96 kcal
Atomic # 6 Polarization: 3.44 SS G_CDS: 8.91 Total: 12.35 kcal
Atomic # 7 Polarization: -100.47 SS G_CDS: -4.84 Total: -105.31 kcal
Atomic # 8 Polarization: -41.15 SS G_CDS: -1.02 Total: -42.17 kcal
Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal
Atomic # 16 Polarization: 1.59 SS G_CDS: -1.12 Total: 0.47 kcal
Total: -75.15 5.02 -70.13 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000263816321.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 91.522 kcal
(2) G-P(sol) polarization free energy of solvation -75.150 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.372 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.020 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.130 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.392 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds