Wall clock time and date at job start Wed Apr 1 2020 04:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35903 * 117.00217 * 2 1 4 4 C 1.38800 * 120.01868 * 0.02562 * 3 2 1 5 5 C 1.38168 * 120.07341 * 179.97438 * 4 3 2 6 6 C 1.38177 * 120.11627 * 359.72292 * 5 4 3 7 7 C 1.38839 * 120.04866 * 0.55389 * 6 5 4 8 8 N 1.40195 * 120.04035 * 179.71877 * 7 6 5 9 9 C 1.37863 * 126.53453 * 129.41015 * 8 7 6 10 10 C 1.34391 * 106.94612 * 180.26647 * 9 8 7 11 11 N 1.34375 * 108.40802 * 359.97438 * 10 9 8 12 12 C 1.31271 * 109.35688 * 0.02562 * 11 10 9 13 13 S 1.76201 * 125.81913 * 180.02562 * 12 11 10 14 14 C 1.81004 * 100.00071 * 359.97134 * 13 12 11 15 15 C 1.50700 * 109.47093 * 179.97438 * 14 13 12 16 16 O 1.21293 * 120.00200 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99692 * 179.97438 * 15 14 13 18 18 C 1.46500 * 120.00385 * 0.02562 * 17 15 14 19 19 C 1.37099 * 119.99721 * 180.02562 * 17 15 14 20 20 H 1.08001 * 120.00367 * 24.39585 * 19 17 15 21 21 C 1.38950 * 120.00193 * 204.38863 * 19 17 15 22 22 N 1.31419 * 119.99866 * 12.65844 * 21 19 17 23 23 Si 1.86797 * 120.00455 * 192.65389 * 21 19 17 24 24 H 1.48500 * 109.47189 * 60.00118 * 23 21 19 25 25 H 1.48501 * 109.47476 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46860 * 300.00499 * 23 21 19 27 27 C 1.38593 * 120.02045 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47213 * 60.00129 * 1 2 3 29 29 H 1.08995 * 109.46965 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46999 * 299.99698 * 1 2 3 31 31 H 1.08001 * 119.96768 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.93864 * 180.02562 * 5 4 3 33 33 H 1.08002 * 119.97458 * 180.30082 * 6 5 4 34 34 H 1.07998 * 126.52284 * 0.24206 * 9 8 7 35 35 H 1.08004 * 125.79209 * 180.02562 * 10 9 8 36 36 H 1.08997 * 109.46912 * 300.00390 * 14 13 12 37 37 H 1.09003 * 109.46695 * 60.00200 * 14 13 12 38 38 H 1.08998 * 109.47491 * 85.86699 * 18 17 15 39 39 H 1.09000 * 109.47417 * 205.86938 * 18 17 15 40 40 H 1.08997 * 109.46988 * 325.86568 * 18 17 15 41 41 H 0.96998 * 120.00270 * 179.97438 * 22 21 19 42 42 H 1.07993 * 120.06545 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2905 2.3752 0.0005 5 6 1.9166 3.6069 0.0011 6 6 3.2963 3.6833 0.0069 7 6 4.0569 2.5218 0.0005 8 7 5.4567 2.5995 0.0004 9 6 6.3154 1.9384 0.8525 10 6 7.5634 2.3006 0.5097 11 7 7.4879 3.1585 -0.5219 12 6 6.2283 3.3480 -0.8390 13 16 5.6354 4.3906 -2.1297 14 6 7.2062 5.0212 -2.7709 15 6 6.9394 5.9622 -3.9174 16 8 5.7993 6.1849 -4.2664 17 7 7.9675 6.5569 -4.5543 18 6 9.3445 6.2883 -4.1324 19 6 7.7247 7.4134 -5.5969 20 1 6.7736 7.9200 -5.6694 21 6 8.7022 7.6297 -6.5604 22 7 9.7520 6.8414 -6.6199 23 14 8.5242 9.0410 -7.7712 24 1 8.4620 10.3255 -7.0286 25 1 9.6912 9.0556 -8.6895 26 1 7.2776 8.8635 -8.5584 27 6 3.4300 1.2839 -0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2120 2.3185 0.0005 32 1 1.3266 4.5115 0.0019 33 1 3.7833 4.6472 0.0122 34 1 6.0380 1.2591 1.6450 35 1 8.4725 1.9594 0.9824 36 1 7.7345 5.5528 -1.9794 37 1 7.8169 4.1883 -3.1195 38 1 9.7089 5.3905 -4.6316 39 1 9.9778 7.1345 -4.3989 40 1 9.3714 6.1402 -3.0529 41 1 10.4343 6.9922 -7.2927 42 1 4.0195 0.3790 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263816321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:58 Heat of formation + Delta-G solvation = 21.391974 kcal Electronic energy + Delta-G solvation = -26721.514516 eV Core-core repulsion = 22794.682043 eV Total energy + Delta-G solvation = -3926.832472 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.15436 -41.09046 -40.38327 -38.63372 -36.75583 -34.91542 -33.80115 -31.90174 -31.30998 -30.60586 -29.98323 -28.16862 -28.06275 -26.21818 -24.48182 -23.93784 -22.45301 -22.15872 -21.02773 -20.05865 -18.95007 -18.07213 -17.88705 -17.51614 -17.25430 -16.94420 -16.74589 -16.70361 -16.40456 -16.09083 -15.87601 -15.27433 -15.10733 -14.70255 -14.61854 -14.37206 -14.30742 -14.20380 -13.77748 -13.46934 -13.24950 -13.21619 -13.15327 -12.94411 -12.65507 -12.41422 -12.24383 -12.13174 -12.03930 -11.63274 -11.37694 -11.20802 -11.02720 -10.57939 -10.48797 -9.91197 -9.74949 -9.36753 -8.47903 -8.37869 -6.04224 -0.21210 0.06864 0.24887 0.89307 1.06956 1.38477 1.42126 1.53231 1.62446 1.87393 1.94917 2.26795 2.34636 2.52645 2.95877 3.04530 3.66491 3.71310 3.85708 3.94146 3.98939 4.06204 4.09165 4.23552 4.33366 4.36470 4.41524 4.41957 4.53047 4.62697 4.64021 4.77643 4.89270 4.96730 5.07500 5.25128 5.29916 5.30768 5.38639 5.42217 5.63218 6.00805 6.02027 6.29649 6.38635 6.76187 7.07096 7.34153 7.88115 8.65475 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016961 B = 0.002410 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.472094 B =11615.761770 C =12768.553053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.139 3.861 4 C -0.193 4.193 5 C -0.056 4.056 6 C -0.161 4.161 7 C 0.137 3.863 8 N -0.403 5.403 9 C -0.034 4.034 10 C -0.029 4.029 11 N -0.510 5.510 12 C 0.167 3.833 13 S 0.042 5.958 14 C -0.104 4.104 15 C 0.450 3.550 16 O -0.615 6.615 17 N -0.449 5.449 18 C 0.118 3.882 19 C -0.346 4.346 20 H 0.077 0.923 21 C -0.002 4.002 22 N -0.894 5.894 23 Si 0.995 3.005 24 H -0.265 1.265 25 H -0.270 1.270 26 H -0.275 1.275 27 C -0.157 4.157 28 H 0.067 0.933 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.167 0.833 32 H 0.164 0.836 33 H 0.126 0.874 34 H 0.216 0.784 35 H 0.204 0.796 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.045 0.955 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.276 0.724 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.770 -12.869 18.362 26.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.244 6.244 3 C 0.092 3.908 4 C -0.212 4.212 5 C -0.075 4.075 6 C -0.181 4.181 7 C 0.046 3.954 8 N -0.086 5.086 9 C -0.166 4.166 10 C -0.177 4.177 11 N -0.233 5.233 12 C -0.201 4.201 13 S 0.271 5.729 14 C -0.256 4.256 15 C 0.238 3.762 16 O -0.503 6.503 17 N -0.167 5.167 18 C -0.025 4.025 19 C -0.474 4.474 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.532 5.532 23 Si 0.817 3.183 24 H -0.189 1.189 25 H -0.194 1.194 26 H -0.201 1.201 27 C -0.177 4.177 28 H 0.085 0.915 29 H 0.138 0.862 30 H 0.092 0.908 31 H 0.184 0.816 32 H 0.181 0.819 33 H 0.144 0.856 34 H 0.232 0.768 35 H 0.221 0.779 36 H 0.138 0.862 37 H 0.129 0.871 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.523 -12.377 17.308 25.762 hybrid contribution 0.981 -0.010 0.015 0.981 sum -13.542 -12.387 17.324 25.237 Atomic orbital electron populations 1.23447 0.75714 1.05949 1.02771 1.86066 1.24009 1.26055 1.88305 1.18736 0.91163 0.85479 0.95382 1.21720 1.02044 0.91181 1.06241 1.21174 0.92646 0.99074 0.94586 1.21205 0.95342 0.97120 1.04431 1.17507 0.79821 0.94605 1.03444 1.43085 1.04737 1.34947 1.25811 1.23530 0.89291 1.03862 0.99949 1.22918 0.98509 0.99402 0.96865 1.70818 1.15698 1.19803 1.16987 1.25698 0.89288 1.03679 1.01459 1.86106 1.07867 1.49020 1.29871 1.23381 0.99552 1.02293 1.00356 1.19868 0.85549 0.84049 0.86744 1.90504 1.22546 1.67036 1.70248 1.43719 1.05851 1.38349 1.28823 1.21508 0.82422 1.01837 0.96758 1.19631 1.02878 1.21282 1.03564 0.90526 1.26191 0.95307 1.00263 0.98648 1.70066 1.11181 1.36541 1.35368 0.84985 0.77942 0.77931 0.77417 1.18936 1.19422 1.20068 1.20170 0.92985 0.96543 1.07996 0.91480 0.86222 0.90828 0.81552 0.81880 0.85605 0.76779 0.77887 0.86186 0.87070 0.93598 0.91704 0.91783 0.91447 0.84327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.23 16 2 O -0.33 -5.54 10.49 -92.46 -0.97 -6.51 16 3 C 0.14 2.62 6.68 22.49 0.15 2.77 16 4 C -0.19 -2.94 9.04 22.39 0.20 -2.74 16 5 C -0.06 -0.99 10.03 22.24 0.22 -0.76 16 6 C -0.16 -3.84 8.87 22.40 0.20 -3.64 16 7 C 0.14 3.48 5.85 38.07 0.22 3.71 16 8 N -0.40 -11.38 2.91 -346.13 -1.01 -12.39 16 9 C -0.03 -0.77 11.32 82.86 0.94 0.16 16 10 C -0.03 -0.74 11.84 83.42 0.99 0.25 16 11 N -0.51 -17.18 10.60 -196.24 -2.08 -19.26 16 12 C 0.17 5.69 7.81 179.61 1.40 7.09 16 13 S 0.04 1.59 19.80 -56.49 -1.12 0.47 16 14 C -0.10 -4.27 4.29 71.24 0.31 -3.97 16 15 C 0.45 23.14 7.65 87.66 0.67 23.81 16 16 O -0.62 -35.61 15.57 -3.07 -0.05 -35.65 16 17 N -0.45 -24.00 3.01 -658.90 -1.98 -25.99 16 18 C 0.12 5.40 8.44 127.77 1.08 6.48 16 19 C -0.35 -19.90 9.24 84.04 0.78 -19.12 16 20 H 0.08 4.65 7.45 -2.91 -0.02 4.63 16 21 C 0.00 -0.09 5.04 84.93 0.43 0.34 16 22 N -0.89 -47.91 10.83 21.66 0.23 -47.67 16 23 Si 0.99 42.54 29.57 68.60 2.03 44.57 16 24 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 25 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 26 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 27 C -0.16 -3.48 9.65 22.48 0.22 -3.26 16 28 H 0.07 0.42 7.66 -2.39 -0.02 0.40 16 29 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.33 7.66 -2.39 -0.02 0.31 16 31 H 0.17 1.39 6.29 -2.91 -0.02 1.37 16 32 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 33 H 0.13 3.28 7.59 -2.91 -0.02 3.25 16 34 H 0.22 2.99 8.06 -2.91 -0.02 2.96 16 35 H 0.20 3.67 8.06 -2.91 -0.02 3.65 16 36 H 0.12 4.54 7.41 -2.40 -0.02 4.52 16 37 H 0.11 4.47 8.11 -2.39 -0.02 4.45 16 38 H 0.05 2.16 7.83 -2.39 -0.02 2.14 16 39 H 0.06 3.10 6.80 -2.39 -0.02 3.08 16 40 H 0.06 2.44 6.61 -2.39 -0.02 2.43 16 41 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 42 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -75.15 371.76 5.02 -70.13 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 1.05 Total: 19.96 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 8.91 Total: 12.35 kcal Atomic # 7 Polarization: -100.47 SS G_CDS: -4.84 Total: -105.31 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -1.02 Total: -42.17 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -1.12 Total: 0.47 kcal Total: -75.15 5.02 -70.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263816321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.522 kcal (2) G-P(sol) polarization free energy of solvation -75.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds