Wall clock time and date at job start Wed Apr 1 2020 04:16:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.46500 * 120.00139 * 2 1
4 4 C 1.53000 * 109.47023 * 90.00142 * 3 2 1
5 5 H 1.09002 * 109.47398 * 59.99929 * 4 3 2
6 6 O 1.42903 * 109.46726 * 299.99685 * 4 3 2
7 7 C 1.53002 * 109.47233 * 180.02562 * 4 3 2
8 8 O 1.42894 * 109.47240 * 184.99627 * 7 4 3
9 9 C 1.35898 * 116.99927 * 179.97438 * 8 7 4
10 10 C 1.38755 * 120.05627 * 359.73169 * 9 8 7
11 11 C 1.38129 * 119.94107 * 179.69830 * 10 9 8
12 12 C 1.38289 * 120.05679 * 0.59479 * 11 10 9
13 13 C 1.38242 * 120.10916 * 359.68125 * 12 11 10
14 14 C 1.38169 * 120.05973 * 0.02562 * 13 12 11
15 15 C 1.50693 * 120.02605 * 179.97438 * 14 13 12
16 16 F 1.39898 * 109.47589 * 0.02562 * 15 14 13
17 17 F 1.39904 * 109.47198 * 120.02815 * 15 14 13
18 18 F 1.39902 * 109.46887 * 240.01943 * 15 14 13
19 19 C 1.34782 * 119.99660 * 179.97438 * 2 1 3
20 20 O 1.21696 * 119.99719 * 179.97438 * 19 2 1
21 21 C 1.46370 * 120.00001 * 0.02562 * 19 2 1
22 22 H 1.07995 * 119.99937 * 359.97438 * 21 19 2
23 23 C 1.40054 * 119.99710 * 179.97438 * 21 19 2
24 24 N 1.30667 * 120.00016 * 359.97438 * 23 21 19
25 25 Si 1.86799 * 119.99746 * 180.02562 * 23 21 19
26 26 H 1.48500 * 109.47208 * 359.97438 * 25 23 21
27 27 H 1.48495 * 109.47661 * 120.00087 * 25 23 21
28 28 H 1.48507 * 109.46867 * 239.99655 * 25 23 21
29 29 H 1.09003 * 109.46707 * 89.99694 * 1 2 3
30 30 H 1.08998 * 109.47469 * 210.00181 * 1 2 3
31 31 H 1.09003 * 109.46953 * 330.00523 * 1 2 3
32 32 H 1.08992 * 109.47085 * 329.99886 * 3 2 1
33 33 H 1.09004 * 109.46923 * 209.99471 * 3 2 1
34 34 H 0.96700 * 114.00234 * 300.00043 * 6 4 3
35 35 H 1.09008 * 109.46873 * 304.99791 * 7 4 3
36 36 H 1.08997 * 109.47047 * 64.99480 * 7 4 3
37 37 H 1.07996 * 120.03031 * 359.96710 * 10 9 8
38 38 H 1.08004 * 119.96538 * 180.29420 * 11 10 9
39 39 H 1.07995 * 119.94015 * 179.70297 * 12 11 10
40 40 H 1.08000 * 119.96866 * 180.02562 * 13 12 11
41 41 H 0.97008 * 120.00305 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4525 1.7103 1.4425
5 1 3.0416 0.9507 1.9564
6 8 1.2039 1.8813 2.1161
7 6 3.2170 3.0357 1.4426
8 8 3.5568 3.3895 2.7847
9 6 4.2439 4.5485 2.9620
10 6 4.5890 5.3265 1.8661
11 6 5.2819 6.5072 2.0496
12 6 5.6425 6.9080 3.3231
13 6 5.3049 6.1317 4.4160
14 6 4.6065 4.9528 4.2384
15 6 4.2393 4.1070 5.4303
16 9 4.7095 4.7173 6.5980
17 9 2.8480 3.9775 5.4994
18 9 4.8195 2.8406 5.2998
19 6 2.1388 -1.1673 0.0005
20 8 3.3558 -1.1673 0.0001
21 6 1.4069 -2.4348 0.0005
22 1 0.3269 -2.4348 0.0005
23 6 2.1071 -3.6478 0.0005
24 7 3.4138 -3.6478 0.0000
25 14 1.1731 -5.2654 -0.0002
26 1 -0.2869 -4.9940 -0.0001
27 1 1.5322 -6.0440 -1.2126
28 1 1.5314 -6.0444 1.2123
29 1 -0.3633 0.0001 -1.0277
30 1 -0.3634 -0.8899 0.5138
31 1 -0.3633 0.8901 0.5138
32 1 1.6085 2.0283 -0.5138
33 1 3.1500 1.1383 -0.5138
34 1 0.6267 2.5440 1.7126
35 1 4.1278 2.9298 0.8530
36 1 2.5918 3.8158 1.0084
37 1 4.3122 5.0114 0.8709
38 1 5.5465 7.1155 1.1973
39 1 6.1884 7.8291 3.4640
40 1 5.5872 6.4471 5.4096
41 1 3.8989 -4.4879 -0.0004
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000274664011.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:16:10
Heat of formation + Delta-G solvation = -241.470315 kcal
Electronic energy + Delta-G solvation = -30902.998477 eV
Core-core repulsion = 25947.865078 eV
Total energy + Delta-G solvation = -4955.133399 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.118 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-50.06183 -47.63255 -47.45406 -40.57141 -38.57754 -37.62636 -36.27885 -33.63318
-32.46283 -32.42063 -31.01928 -30.08450 -27.23191 -26.05202 -25.91690 -24.55008
-22.79144 -22.29982 -21.40375 -19.44638 -18.89716 -18.37968 -18.37165 -17.67843
-16.84756 -16.51067 -16.21659 -15.64522 -15.57840 -15.37570 -14.99095 -14.74558
-14.51079 -14.34743 -14.32912 -13.97863 -13.95636 -13.85806 -13.65981 -13.65425
-13.23963 -12.87480 -12.81090 -12.59200 -12.35482 -11.96402 -11.59219 -11.43902
-11.40604 -11.28462 -11.21031 -11.09467 -10.99494 -10.66546 -10.25791 -10.16602
-9.93973 -9.61077 -8.87271 -8.64940 -7.65056 -7.26313 -6.21968 -4.66468
0.63339 0.99047 2.65016 2.82970 3.12454 3.18162 3.20919 3.25090
3.72729 3.98740 4.06745 4.37461 4.47198 4.48595 4.52882 4.57318
4.60635 4.73893 4.88802 4.93766 5.03735 5.09471 5.30362 5.35267
5.45681 5.47146 5.76074 5.78187 5.83021 6.01174 6.04213 6.14370
6.26704 6.36211 6.47734 6.59294 7.02347 7.43520 7.54928 7.87035
8.10089 8.30995 9.00556 9.35774 10.53513 10.72396
Molecular weight = 347.12amu
Principal moments of inertia in cm(-1)
A = 0.016513 B = 0.002577 C = 0.002448
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1695.175662 B =10861.846456 C =11435.008362
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.106 3.894
2 N -0.638 5.638
3 C 0.105 3.895
4 C 0.094 3.906
5 H 0.116 0.884
6 O -0.541 6.541
7 C 0.029 3.971
8 O -0.291 6.291
9 C 0.186 3.814
10 C -0.215 4.215
11 C -0.047 4.047
12 C -0.167 4.167
13 C -0.036 4.036
14 C -0.223 4.223
15 C 0.517 3.483
16 F -0.184 7.184
17 F -0.171 7.171
18 F -0.171 7.171
19 C 0.555 3.445
20 O -0.579 6.579
21 C -0.540 4.540
22 H 0.073 0.927
23 C 0.086 3.914
24 N -0.766 5.766
25 Si 0.907 3.093
26 H -0.263 1.263
27 H -0.276 1.276
28 H -0.276 1.276
29 H 0.028 0.972
30 H 0.072 0.928
31 H 0.044 0.956
32 H 0.058 0.942
33 H 0.084 0.916
34 H 0.361 0.639
35 H 0.078 0.922
36 H 0.067 0.933
37 H 0.140 0.860
38 H 0.134 0.866
39 H 0.134 0.866
40 H 0.142 0.858
41 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.009 22.093 4.688 22.608
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.038 4.038
2 N -0.376 5.376
3 C -0.021 4.021
4 C 0.033 3.967
5 H 0.133 0.867
6 O -0.345 6.345
7 C -0.047 4.047
8 O -0.203 6.203
9 C 0.138 3.862
10 C -0.233 4.233
11 C -0.065 4.065
12 C -0.185 4.185
13 C -0.054 4.054
14 C -0.226 4.226
15 C 0.462 3.538
16 F -0.165 7.165
17 F -0.152 7.152
18 F -0.152 7.152
19 C 0.361 3.639
20 O -0.462 6.462
21 C -0.576 4.576
22 H 0.091 0.909
23 C -0.134 4.134
24 N -0.395 5.395
25 Si 0.732 3.268
26 H -0.187 1.187
27 H -0.202 1.202
28 H -0.201 1.201
29 H 0.046 0.954
30 H 0.090 0.910
31 H 0.063 0.937
32 H 0.077 0.923
33 H 0.103 0.897
34 H 0.207 0.793
35 H 0.096 0.904
36 H 0.085 0.915
37 H 0.158 0.842
38 H 0.151 0.849
39 H 0.152 0.848
40 H 0.160 0.840
41 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 2.002 21.302 5.231 22.026
hybrid contribution -0.703 -0.346 -0.415 0.887
sum 1.299 20.956 4.816 21.542
Atomic orbital electron populations
1.21396 0.81736 1.01614 0.99080 1.47832 1.05340 1.04484 1.79924
1.21448 0.99085 0.88170 0.93400 1.22663 0.84530 0.93412 0.96123
0.86662 1.86749 1.28542 1.62893 1.56297 1.23855 1.00688 0.98997
0.81159 1.86285 1.67986 1.35190 1.30828 1.18717 0.89134 0.85784
0.92543 1.21329 1.06047 0.97646 0.98319 1.21194 0.93249 0.94412
0.97650 1.21029 1.04101 1.01376 0.92024 1.20878 0.92948 0.91016
1.00554 1.19369 1.12119 1.00280 0.90787 1.17986 0.75076 0.78616
0.82074 1.93131 1.88581 1.83082 1.51744 1.93239 1.29524 1.95969
1.96516 1.93254 1.84173 1.41941 1.95810 1.18308 0.86985 0.82290
0.76271 1.90595 1.14003 1.86234 1.55331 1.21027 0.93782 0.89116
1.53706 0.90853 1.25751 0.94633 1.00395 0.92572 1.70026 1.07083
1.27240 1.35141 0.86321 0.80537 0.81732 0.78229 1.18709 1.20171
1.20117 0.95362 0.90963 0.93693 0.92341 0.89744 0.79294 0.90398
0.91458 0.84215 0.84856 0.84812 0.83984 0.92130
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.11 1.92 9.89 59.85 0.59 2.51 16
2 N -0.64 -14.00 2.80 -183.25 -0.51 -14.51 16
3 C 0.10 1.83 5.10 -4.04 -0.02 1.81 16
4 C 0.09 1.57 3.52 -26.73 -0.09 1.48 16
5 H 0.12 2.47 8.14 -51.93 -0.42 2.05 16
6 O -0.54 -8.86 12.02 -40.11 -0.48 -9.35 16
7 C 0.03 0.37 4.37 37.16 0.16 0.53 16
8 O -0.29 -4.36 9.01 -24.30 -0.22 -4.57 16
9 C 0.19 2.37 6.57 -39.21 -0.26 2.11 16
10 C -0.21 -2.10 9.04 -39.43 -0.36 -2.46 16
11 C -0.05 -0.36 10.04 -39.60 -0.40 -0.76 16
12 C -0.17 -1.27 10.04 -39.56 -0.40 -1.67 16
13 C -0.04 -0.34 9.43 -39.61 -0.37 -0.71 16
14 C -0.22 -2.76 5.38 -104.48 -0.56 -3.32 16
15 C 0.52 7.20 2.99 36.00 0.11 7.31 16
16 F -0.18 -2.26 15.97 2.25 0.04 -2.23 16
17 F -0.17 -2.62 16.95 2.25 0.04 -2.59 16
18 F -0.17 -2.75 16.95 2.25 0.04 -2.71 16
19 C 0.55 15.56 7.61 -12.99 -0.10 15.46 16
20 O -0.58 -18.27 14.60 5.19 0.08 -18.19 16
21 C -0.54 -15.12 8.74 -35.63 -0.31 -15.43 16
22 H 0.07 1.89 6.00 -52.49 -0.31 1.57 16
23 C 0.09 2.40 5.50 -17.37 -0.10 2.31 16
24 N -0.77 -22.88 11.83 55.55 0.66 -22.23 16
25 Si 0.91 20.16 29.56 -169.99 -5.02 15.13 16
26 H -0.26 -5.63 7.11 56.52 0.40 -5.22 16
27 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16
28 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16
29 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16
30 H 0.07 1.41 6.09 -51.93 -0.32 1.09 16
31 H 0.04 0.66 6.88 -51.93 -0.36 0.31 16
32 H 0.06 0.78 8.07 -51.93 -0.42 0.36 16
33 H 0.08 1.61 7.42 -51.93 -0.39 1.23 16
34 H 0.36 4.19 8.79 45.56 0.40 4.59 16
35 H 0.08 0.92 7.65 -51.92 -0.40 0.53 16
36 H 0.07 0.65 7.68 -51.93 -0.40 0.25 16
37 H 0.14 1.13 6.30 -52.49 -0.33 0.80 16
38 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16
39 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16
40 H 0.14 1.05 7.16 -52.49 -0.38 0.68 16
41 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16
LS Contribution 361.95 15.07 5.45 5.45
Total: -1.00 -36.45 361.95 -5.76 -42.21
By element:
Atomic # 1 Polarization: 8.12 SS G_CDS: -3.72 Total: 4.41 kcal
Atomic # 6 Polarization: 11.28 SS G_CDS: -2.10 Total: 9.17 kcal
Atomic # 7 Polarization: -36.88 SS G_CDS: 0.14 Total: -36.74 kcal
Atomic # 8 Polarization: -31.49 SS G_CDS: -0.63 Total: -32.11 kcal
Atomic # 9 Polarization: -7.64 SS G_CDS: 0.11 Total: -7.52 kcal
Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal
Total LS contribution 5.45 Total: 5.45 kcal
Total: -36.45 -5.76 -42.21 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000274664011.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -199.261 kcal
(2) G-P(sol) polarization free energy of solvation -36.448 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.709 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.761 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.209 kcal
(6) G-S(sol) free energy of system = (1) + (5) -241.470 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds