Wall clock time and date at job start Wed Apr 1 2020 04:16:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.46500 * 120.00139 * 2 1
4 4 C 1.53000 * 109.47023 * 90.00142 * 3 2 1
5 5 H 1.09002 * 109.47398 * 59.99929 * 4 3 2
6 6 O 1.42903 * 109.46726 * 299.99685 * 4 3 2
7 7 C 1.53002 * 109.47233 * 180.02562 * 4 3 2
8 8 O 1.42894 * 109.47240 * 184.99627 * 7 4 3
9 9 C 1.35898 * 116.99927 * 179.97438 * 8 7 4
10 10 C 1.38755 * 120.05627 * 359.73169 * 9 8 7
11 11 C 1.38129 * 119.94107 * 179.69830 * 10 9 8
12 12 C 1.38289 * 120.05679 * 0.59479 * 11 10 9
13 13 C 1.38242 * 120.10916 * 359.68125 * 12 11 10
14 14 C 1.38169 * 120.05973 * 0.02562 * 13 12 11
15 15 C 1.50693 * 120.02605 * 179.97438 * 14 13 12
16 16 F 1.39898 * 109.47589 * 0.02562 * 15 14 13
17 17 F 1.39904 * 109.47198 * 120.02815 * 15 14 13
18 18 F 1.39902 * 109.46887 * 240.01943 * 15 14 13
19 19 C 1.34782 * 119.99660 * 179.97438 * 2 1 3
20 20 O 1.21696 * 119.99719 * 179.97438 * 19 2 1
21 21 C 1.46370 * 120.00001 * 0.02562 * 19 2 1
22 22 H 1.07995 * 119.99937 * 359.97438 * 21 19 2
23 23 C 1.40054 * 119.99710 * 179.97438 * 21 19 2
24 24 N 1.30667 * 120.00016 * 359.97438 * 23 21 19
25 25 Si 1.86799 * 119.99746 * 180.02562 * 23 21 19
26 26 H 1.48500 * 109.47208 * 359.97438 * 25 23 21
27 27 H 1.48495 * 109.47661 * 120.00087 * 25 23 21
28 28 H 1.48507 * 109.46867 * 239.99655 * 25 23 21
29 29 H 1.09003 * 109.46707 * 89.99694 * 1 2 3
30 30 H 1.08998 * 109.47469 * 210.00181 * 1 2 3
31 31 H 1.09003 * 109.46953 * 330.00523 * 1 2 3
32 32 H 1.08992 * 109.47085 * 329.99886 * 3 2 1
33 33 H 1.09004 * 109.46923 * 209.99471 * 3 2 1
34 34 H 0.96700 * 114.00234 * 300.00043 * 6 4 3
35 35 H 1.09008 * 109.46873 * 304.99791 * 7 4 3
36 36 H 1.08997 * 109.47047 * 64.99480 * 7 4 3
37 37 H 1.07996 * 120.03031 * 359.96710 * 10 9 8
38 38 H 1.08004 * 119.96538 * 180.29420 * 11 10 9
39 39 H 1.07995 * 119.94015 * 179.70297 * 12 11 10
40 40 H 1.08000 * 119.96866 * 180.02562 * 13 12 11
41 41 H 0.97008 * 120.00305 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4525 1.7103 1.4425
5 1 3.0416 0.9507 1.9564
6 8 1.2039 1.8813 2.1161
7 6 3.2170 3.0357 1.4426
8 8 3.5568 3.3895 2.7847
9 6 4.2439 4.5485 2.9620
10 6 4.5890 5.3265 1.8661
11 6 5.2819 6.5072 2.0496
12 6 5.6425 6.9080 3.3231
13 6 5.3049 6.1317 4.4160
14 6 4.6065 4.9528 4.2384
15 6 4.2393 4.1070 5.4303
16 9 4.7095 4.7173 6.5980
17 9 2.8480 3.9775 5.4994
18 9 4.8195 2.8406 5.2998
19 6 2.1388 -1.1673 0.0005
20 8 3.3558 -1.1673 0.0001
21 6 1.4069 -2.4348 0.0005
22 1 0.3269 -2.4348 0.0005
23 6 2.1071 -3.6478 0.0005
24 7 3.4138 -3.6478 0.0000
25 14 1.1731 -5.2654 -0.0002
26 1 -0.2869 -4.9940 -0.0001
27 1 1.5322 -6.0440 -1.2126
28 1 1.5314 -6.0444 1.2123
29 1 -0.3633 0.0001 -1.0277
30 1 -0.3634 -0.8899 0.5138
31 1 -0.3633 0.8901 0.5138
32 1 1.6085 2.0283 -0.5138
33 1 3.1500 1.1383 -0.5138
34 1 0.6267 2.5440 1.7126
35 1 4.1278 2.9298 0.8530
36 1 2.5918 3.8158 1.0084
37 1 4.3122 5.0114 0.8709
38 1 5.5465 7.1155 1.1973
39 1 6.1884 7.8291 3.4640
40 1 5.5872 6.4471 5.4096
41 1 3.8989 -4.4879 -0.0004
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000274664011.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:16:10
Heat of formation + Delta-G solvation = -268.266457 kcal
Electronic energy + Delta-G solvation = -30904.160445 eV
Core-core repulsion = 25947.865078 eV
Total energy + Delta-G solvation = -4956.295367 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.118 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-51.17417 -48.71890 -48.63684 -41.44130 -40.05209 -38.86440 -37.70650 -35.44711
-34.59378 -33.21437 -32.14385 -31.01925 -28.86200 -27.62586 -26.96299 -26.09492
-23.92645 -23.13181 -22.53718 -21.22379 -19.87828 -19.51427 -19.44200 -18.73164
-18.45214 -17.83251 -17.59817 -17.35766 -16.68519 -16.29674 -16.12328 -16.03280
-15.86923 -15.59615 -15.42721 -15.34573 -15.27785 -15.08725 -14.83054 -14.79577
-14.38971 -14.23751 -13.95359 -13.65679 -13.61986 -13.36794 -13.10526 -13.06851
-12.78844 -12.70957 -12.61336 -12.33497 -12.13693 -12.08641 -11.98845 -11.87615
-11.27930 -10.94486 -10.32301 -9.80708 -9.42968 -9.04376 -8.30004 -6.84171
-0.09323 0.27107 1.37776 1.38554 1.55963 1.64367 1.86935 2.23432
2.45749 2.47928 2.73974 2.88708 3.01627 3.38383 3.41388 3.54904
3.66253 3.81818 3.85354 3.96540 4.09294 4.15485 4.25059 4.29517
4.33611 4.42573 4.61178 4.73130 4.73184 4.92524 5.02281 5.06113
5.08934 5.21888 5.36764 5.37700 5.64309 5.75579 6.13488 6.16634
6.39594 6.87044 6.87615 7.38956 8.46068 8.66551
Molecular weight = 347.12amu
Principal moments of inertia in cm(-1)
A = 0.016513 B = 0.002577 C = 0.002448
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1695.175662 B =10861.846456 C =11435.008362
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.103 3.897
2 N -0.642 5.642
3 C 0.105 3.895
4 C 0.106 3.894
5 H 0.052 0.948
6 O -0.559 6.559
7 C 0.038 3.962
8 O -0.325 6.325
9 C 0.155 3.845
10 C -0.217 4.217
11 C -0.040 4.040
12 C -0.155 4.155
13 C -0.041 4.041
14 C -0.245 4.245
15 C 0.510 3.490
16 F -0.176 7.176
17 F -0.185 7.185
18 F -0.191 7.191
19 C 0.537 3.463
20 O -0.630 6.630
21 C -0.568 4.568
22 H 0.091 0.909
23 C 0.027 3.973
24 N -0.822 5.822
25 Si 0.994 3.006
26 H -0.246 1.246
27 H -0.266 1.266
28 H -0.272 1.272
29 H 0.047 0.953
30 H 0.053 0.947
31 H 0.083 0.917
32 H 0.114 0.886
33 H 0.061 0.939
34 H 0.385 0.615
35 H 0.083 0.917
36 H 0.110 0.890
37 H 0.157 0.843
38 H 0.171 0.829
39 H 0.170 0.830
40 H 0.158 0.842
41 H 0.273 0.727
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.279 24.772 3.579 25.031
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.039 4.039
2 N -0.378 5.378
3 C -0.020 4.020
4 C 0.045 3.955
5 H 0.070 0.930
6 O -0.366 6.366
7 C -0.037 4.037
8 O -0.238 6.238
9 C 0.109 3.891
10 C -0.236 4.236
11 C -0.057 4.057
12 C -0.173 4.173
13 C -0.059 4.059
14 C -0.247 4.247
15 C 0.456 3.544
16 F -0.158 7.158
17 F -0.166 7.166
18 F -0.173 7.173
19 C 0.343 3.657
20 O -0.518 6.518
21 C -0.605 4.605
22 H 0.109 0.891
23 C -0.188 4.188
24 N -0.452 5.452
25 Si 0.813 3.187
26 H -0.168 1.168
27 H -0.191 1.191
28 H -0.197 1.197
29 H 0.065 0.935
30 H 0.072 0.928
31 H 0.102 0.898
32 H 0.132 0.868
33 H 0.080 0.920
34 H 0.235 0.765
35 H 0.101 0.899
36 H 0.128 0.872
37 H 0.174 0.826
38 H 0.188 0.812
39 H 0.187 0.813
40 H 0.175 0.825
41 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 0.661 24.055 4.118 24.414
hybrid contribution -0.295 -0.987 -0.016 1.030
sum 0.366 23.069 4.102 23.433
Atomic orbital electron populations
1.21567 0.79206 1.02614 1.00553 1.47661 1.07079 1.04544 1.78504
1.21664 0.98622 0.87458 0.94252 1.22161 0.84751 0.94178 0.94417
0.93021 1.86694 1.28831 1.64191 1.56870 1.23685 1.01134 0.97752
0.81102 1.86206 1.69194 1.36913 1.31537 1.19014 0.90600 0.85850
0.93682 1.21611 1.05953 0.97959 0.98051 1.21679 0.91427 0.93597
0.99017 1.21502 1.02681 1.01835 0.91274 1.21180 0.92375 0.90122
1.02244 1.19490 1.14033 1.01370 0.89846 1.18350 0.74416 0.78293
0.83305 1.93130 1.88388 1.82728 1.51518 1.93198 1.30683 1.96049
1.96669 1.93206 1.84442 1.43638 1.95990 1.18656 0.86656 0.84434
0.76001 1.90543 1.16141 1.87612 1.57470 1.21571 0.94871 0.90009
1.54020 0.89093 1.26998 0.95519 1.04998 0.91296 1.70197 1.09497
1.28743 1.36720 0.85025 0.79519 0.75641 0.78469 1.16841 1.19117
1.19732 0.93467 0.92850 0.89849 0.86781 0.92045 0.76546 0.89894
0.87212 0.82576 0.81182 0.81257 0.82485 0.91714
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 3.58 9.89 127.77 1.26 4.84 16
2 N -0.64 -28.39 2.80 -851.88 -2.38 -30.77 16
3 C 0.10 3.62 5.10 86.38 0.44 4.06 16
4 C 0.11 3.64 3.52 30.60 0.11 3.75 16
5 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16
6 O -0.56 -18.02 12.02 -144.32 -1.74 -19.75 16
7 C 0.04 0.97 4.37 71.98 0.31 1.28 16
8 O -0.33 -9.96 9.01 -87.74 -0.79 -10.75 16
9 C 0.16 3.88 6.57 22.51 0.15 4.03 16
10 C -0.22 -3.71 9.04 22.37 0.20 -3.50 16
11 C -0.04 -0.45 10.04 22.26 0.22 -0.23 16
12 C -0.16 -1.76 10.04 22.28 0.22 -1.53 16
13 C -0.04 -0.69 9.43 22.25 0.21 -0.48 16
14 C -0.25 -6.02 5.38 -19.77 -0.11 -6.13 16
15 C 0.51 14.82 2.99 71.23 0.21 15.03 16
16 F -0.18 -4.42 15.97 44.97 0.72 -3.70 16
17 F -0.18 -5.93 16.95 44.97 0.76 -5.17 16
18 F -0.19 -6.63 16.95 44.97 0.76 -5.86 16
19 C 0.54 31.34 7.61 86.36 0.66 32.00 16
20 O -0.63 -42.28 14.60 -4.34 -0.06 -42.34 16
21 C -0.57 -32.64 8.74 24.83 0.22 -32.43 16
22 H 0.09 4.71 6.00 -2.91 -0.02 4.69 16
23 C 0.03 1.52 5.50 85.31 0.47 1.99 16
24 N -0.82 -51.27 11.83 21.84 0.26 -51.02 16
25 Si 0.99 41.90 29.56 68.60 2.03 43.93 16
26 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16
27 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16
28 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16
29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16
30 H 0.05 2.04 6.09 -2.39 -0.01 2.03 16
31 H 0.08 2.22 6.88 -2.39 -0.02 2.20 16
32 H 0.11 2.66 8.07 -2.39 -0.02 2.64 16
33 H 0.06 2.42 7.42 -2.39 -0.02 2.40 16
34 H 0.39 7.91 8.79 -74.06 -0.65 7.26 16
35 H 0.08 1.95 7.65 -2.38 -0.02 1.93 16
36 H 0.11 1.78 7.68 -2.39 -0.02 1.76 16
37 H 0.16 2.03 6.30 -2.91 -0.02 2.01 16
38 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16
39 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16
40 H 0.16 2.03 7.16 -2.91 -0.02 2.01 16
41 H 0.27 15.43 8.29 -92.70 -0.77 14.67 16
Total: -1.00 -87.85 361.95 4.60 -83.25
By element:
Atomic # 1 Polarization: 19.05 SS G_CDS: 0.45 Total: 19.50 kcal
Atomic # 6 Polarization: 18.09 SS G_CDS: 4.58 Total: 22.68 kcal
Atomic # 7 Polarization: -79.66 SS G_CDS: -2.12 Total: -81.78 kcal
Atomic # 8 Polarization: -70.25 SS G_CDS: -2.59 Total: -72.84 kcal
Atomic # 9 Polarization: -16.98 SS G_CDS: 2.24 Total: -14.74 kcal
Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal
Total: -87.85 4.60 -83.25 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000274664011.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -185.014 kcal
(2) G-P(sol) polarization free energy of solvation -87.848 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -272.862 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.596 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.252 kcal
(6) G-S(sol) free energy of system = (1) + (5) -268.266 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds