Wall clock time and date at job start Wed Apr 1 2020 04:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45198 * 109.47272 * 2 1 4 4 C 1.34233 * 116.99891 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99880 * 359.97438 * 4 3 2 6 6 C 1.50692 * 119.99783 * 180.02562 * 4 3 2 7 7 H 1.08999 * 109.47601 * 39.99921 * 6 4 3 8 8 S 1.81007 * 109.47180 * 159.99838 * 6 4 3 9 9 C 1.76196 * 100.00153 * 184.99754 * 8 6 4 10 10 N 1.32391 * 126.25688 * 0.02562 * 9 8 6 11 11 N 1.28515 * 110.20151 * 180.02562 * 10 9 8 12 12 C 1.33104 * 109.74916 * 359.97438 * 11 10 9 13 13 C 1.39771 * 126.56620 * 179.74152 * 12 11 10 14 14 H 1.08001 * 119.99979 * 180.02562 * 13 12 11 15 15 C 1.40083 * 120.00227 * 0.02562 * 13 12 11 16 16 N 1.30818 * 119.99767 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00238 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46904 * 89.99596 * 17 15 13 19 19 H 1.48496 * 109.47194 * 209.99482 * 17 15 13 20 20 H 1.48500 * 109.47052 * 330.00274 * 17 15 13 21 21 N 1.36673 * 126.25811 * 180.02562 * 9 8 6 22 22 C 1.46496 * 127.15182 * 0.02562 * 21 9 8 23 23 C 1.50705 * 109.47058 * 279.99422 * 6 4 3 24 24 C 1.38229 * 119.99819 * 299.72998 * 23 6 4 25 25 C 1.38241 * 119.99996 * 179.78782 * 24 23 6 26 26 C 1.38234 * 119.99687 * 0.44044 * 25 24 23 27 27 C 1.38240 * 120.00115 * 359.81357 * 26 25 24 28 28 C 1.38231 * 119.99818 * 120.00234 * 23 6 4 29 29 H 1.08996 * 109.47622 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47234 * 300.00354 * 1 2 3 31 31 H 1.09001 * 109.47146 * 59.99588 * 1 2 3 32 32 H 1.09003 * 109.46736 * 239.99809 * 2 1 3 33 33 H 1.09001 * 109.47146 * 120.00412 * 2 1 3 34 34 H 0.96993 * 119.99881 * 180.02562 * 16 15 13 35 35 H 1.09001 * 109.46891 * 269.97466 * 22 21 9 36 36 H 1.08996 * 109.47385 * 29.97355 * 22 21 9 37 37 H 1.09000 * 109.47355 * 149.97527 * 22 21 9 38 38 H 1.08001 * 120.00369 * 359.97438 * 24 23 6 39 39 H 1.07999 * 120.00280 * 180.27332 * 25 24 23 40 40 H 1.08004 * 120.00095 * 179.83806 * 26 25 24 41 41 H 1.07996 * 119.99979 * 180.02562 * 27 26 25 42 42 H 1.07997 * 120.00132 * 359.97438 * 28 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9207 2.9372 0.0000 7 1 3.3325 3.5736 0.6612 8 16 5.6335 2.8815 0.5829 9 6 5.9978 4.6048 0.6274 10 7 5.1727 5.5881 0.3032 11 7 5.7569 6.7236 0.4484 12 6 7.0026 6.5368 0.8786 13 6 7.9484 7.5302 1.1474 14 1 8.9344 7.2574 1.4938 15 6 7.6177 8.8794 0.9675 16 7 6.4233 9.2098 0.5484 17 14 8.8816 10.2070 1.3274 18 1 9.6641 10.4918 0.0978 19 1 8.1884 11.4433 1.7704 20 1 9.7970 9.7412 2.3998 21 7 7.1839 5.1708 1.0027 22 6 8.3955 4.4756 1.4439 23 6 3.8842 3.4965 -1.3989 24 6 4.5676 2.8578 -2.4166 25 6 4.5306 3.3683 -3.7008 26 6 3.8175 4.5227 -3.9653 27 6 3.1383 5.1643 -2.9464 28 6 3.1719 4.6513 -1.6632 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 6.1944 10.1440 0.4234 35 1 8.3673 4.3477 2.5260 36 1 8.4491 3.4986 0.9638 37 1 9.2717 5.0634 1.1703 38 1 5.1281 1.9582 -2.2092 39 1 5.0609 2.8669 -4.4968 40 1 3.7906 4.9230 -4.9680 41 1 2.5809 6.0659 -3.1532 42 1 2.6412 5.1525 -0.8673 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279867132.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:35 Heat of formation + Delta-G solvation = 13.376265 kcal Electronic energy + Delta-G solvation = -27889.210892 eV Core-core repulsion = 23962.030833 eV Total energy + Delta-G solvation = -3927.180060 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.63357 -40.50254 -38.76780 -36.72286 -33.73043 -33.40815 -33.03442 -31.70783 -30.53880 -29.29018 -27.84277 -26.49847 -25.53818 -23.60743 -22.32010 -21.91506 -20.96853 -20.83612 -20.36882 -17.81332 -17.39672 -17.07226 -16.80311 -16.32726 -15.61849 -15.44604 -15.11752 -14.67846 -14.63904 -14.20608 -14.14290 -13.66607 -13.31225 -13.27021 -13.03041 -12.89028 -12.80797 -12.36272 -12.23819 -12.19876 -12.03914 -11.76946 -11.42084 -11.31930 -11.12088 -10.94364 -10.77566 -10.68599 -10.65851 -10.40605 -10.21841 -9.70925 -9.64657 -8.75580 -8.62465 -8.50113 -8.39437 -8.20423 -6.87738 -6.66344 -4.58161 1.34902 1.67835 1.81516 2.15766 2.66931 2.83786 2.90489 3.05572 3.08743 3.35106 3.86156 4.17542 4.23192 4.42302 4.58738 4.69172 4.75598 4.80101 5.06882 5.08589 5.32224 5.32788 5.38438 5.45605 5.52764 5.54484 5.57331 5.76357 5.84595 5.88212 5.95885 6.04046 6.21801 6.31414 6.39838 6.75420 6.75981 6.86234 6.88412 6.91349 7.23205 7.32646 7.48006 7.63362 7.88198 8.16850 8.69146 8.85145 10.26056 10.63119 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014819 B = 0.003323 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.968027 B = 8423.935746 C = 9211.998312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.346 6.346 4 C 0.494 3.506 5 O -0.493 6.493 6 C -0.030 4.030 7 H 0.135 0.865 8 S 0.024 5.976 9 C 0.030 3.970 10 N -0.272 5.272 11 N -0.330 5.330 12 C 0.348 3.652 13 C -0.447 4.447 14 H 0.083 0.917 15 C 0.079 3.921 16 N -0.735 5.735 17 Si 0.919 3.081 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.263 1.263 21 N -0.513 5.513 22 C 0.100 3.900 23 C -0.076 4.076 24 C -0.099 4.099 25 C -0.130 4.130 26 C -0.113 4.113 27 C -0.121 4.121 28 C -0.050 4.050 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.279 0.721 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.122 0.878 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.629 -12.652 -3.334 14.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.263 6.263 4 C 0.335 3.665 5 O -0.380 6.380 6 C -0.160 4.160 7 H 0.153 0.847 8 S 0.254 5.746 9 C -0.341 4.341 10 N -0.118 5.118 11 N -0.178 5.178 12 C 0.104 3.896 13 C -0.487 4.487 14 H 0.101 0.899 15 C -0.146 4.146 16 N -0.359 5.359 17 Si 0.743 3.257 18 H -0.194 1.194 19 H -0.200 1.200 20 H -0.187 1.187 21 N -0.215 5.215 22 C -0.045 4.045 23 C -0.078 4.078 24 C -0.118 4.118 25 C -0.148 4.148 26 C -0.132 4.132 27 C -0.139 4.139 28 C -0.070 4.070 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.140 0.860 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.140 0.860 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.181 -13.077 -3.523 15.329 hybrid contribution 1.316 1.056 0.395 1.733 sum -5.865 -12.021 -3.128 13.736 Atomic orbital electron populations 1.21807 0.92484 1.02892 1.03770 1.23078 0.95465 0.80022 1.02717 1.86519 1.23551 1.32447 1.83796 1.22592 0.81024 0.90711 0.72200 1.90675 1.60215 1.42274 1.44802 1.21762 0.99632 0.94173 1.00443 0.84733 1.84840 1.09189 0.96167 1.84420 1.25326 0.90080 0.98483 1.20231 1.74532 1.26149 0.95289 1.15869 1.75450 1.04041 1.11590 1.26693 1.21607 0.94196 0.79241 0.94536 1.18098 0.97933 0.89026 1.43629 0.89873 1.25777 0.96031 0.99311 0.93531 1.70004 1.18352 1.19255 1.28314 0.86139 0.80461 0.79542 0.79530 1.19397 1.19988 1.18669 1.45983 1.10499 1.06892 1.58160 1.21501 0.86765 0.96785 0.99404 1.19032 1.00439 0.97234 0.91087 1.20962 0.98193 1.00025 0.92649 1.20938 1.00451 0.97139 0.96311 1.21119 0.97396 0.95608 0.99034 1.21066 1.00280 0.99657 0.92897 1.20931 0.96228 0.93245 0.96616 0.90234 0.91333 0.91323 0.91102 0.91055 0.91019 0.92512 0.91609 0.90316 0.86022 0.86404 0.86494 0.86036 0.85432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.29 37.16 0.38 -0.75 16 2 C 0.06 0.63 6.19 37.16 0.23 0.86 16 3 O -0.35 -4.75 10.22 -39.27 -0.40 -5.15 16 4 C 0.49 7.79 6.76 36.00 0.24 8.03 16 5 O -0.49 -8.38 15.79 -18.75 -0.30 -8.67 16 6 C -0.03 -0.52 2.44 -29.04 -0.07 -0.59 16 7 H 0.13 2.34 7.88 -51.92 -0.41 1.93 16 8 S 0.02 0.45 20.09 -107.50 -2.16 -1.71 16 9 C 0.03 0.71 7.85 -87.27 -0.69 0.03 16 10 N -0.27 -7.08 9.85 30.89 0.30 -6.78 16 11 N -0.33 -9.59 10.48 31.26 0.33 -9.27 16 12 C 0.35 9.58 7.53 -154.80 -1.17 8.41 16 13 C -0.45 -11.71 9.04 -38.32 -0.35 -12.06 16 14 H 0.08 1.99 7.30 -52.49 -0.38 1.60 16 15 C 0.08 2.00 5.50 -17.29 -0.10 1.90 16 16 N -0.74 -19.86 11.94 55.56 0.66 -19.20 16 17 Si 0.92 18.40 29.56 -169.99 -5.03 13.38 16 18 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 19 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 21 N -0.51 -12.31 3.26 -123.18 -0.40 -12.71 16 22 C 0.10 1.85 10.88 59.84 0.65 2.50 16 23 C -0.08 -1.33 3.89 -104.63 -0.41 -1.74 16 24 C -0.10 -1.65 8.88 -39.58 -0.35 -2.01 16 25 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 26 C -0.11 -1.68 10.05 -39.58 -0.40 -2.08 16 27 C -0.12 -1.95 10.05 -39.58 -0.40 -2.35 16 28 C -0.05 -0.89 8.46 -39.58 -0.33 -1.22 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.71 8.13 -51.93 -0.42 0.28 16 33 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 34 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.08 7.85 -51.93 -0.41 0.68 16 37 H 0.08 1.36 7.52 -51.93 -0.39 0.97 16 38 H 0.12 1.98 8.05 -52.49 -0.42 1.55 16 39 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 41 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.13 2.25 7.95 -52.49 -0.42 1.83 16 LS Contribution 378.21 15.07 5.70 5.70 Total: -1.00 -32.99 378.21 -9.80 -42.79 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -5.37 Total: 5.05 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -3.14 Total: -3.43 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.89 Total: -47.96 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.70 Total: -13.83 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.38 kcal Atomic # 16 Polarization: 0.45 SS G_CDS: -2.16 Total: -1.71 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.99 -9.80 -42.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279867132.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.171 kcal (2) G-P(sol) polarization free energy of solvation -32.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds