Wall clock time and date at job start Wed Apr 1 2020 04:10:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45196 * 1
3 3 C 1.34711 * 117.00112 * 2 1
4 4 O 1.21464 * 119.99931 * 0.02562 * 3 2 1
5 5 C 1.47725 * 119.99681 * 180.02562 * 3 2 1
6 6 C 1.39650 * 120.15317 * 5.57555 * 5 3 2
7 7 C 1.37924 * 119.84755 * 180.02562 * 6 5 3
8 8 C 1.38392 * 120.14845 * 359.72751 * 7 6 5
9 9 C 1.38341 * 120.30467 * 0.55453 * 8 7 6
10 10 C 1.37965 * 120.14890 * 359.44102 * 9 8 7
11 11 C 1.50706 * 120.07540 * 180.29913 * 10 9 8
12 12 C 1.52994 * 109.47211 * 98.12284 * 11 10 9
13 13 S 1.80995 * 109.47107 * 179.97438 * 12 11 10
14 14 C 1.76204 * 99.99880 * 179.97438 * 13 12 11
15 15 N 1.32391 * 126.26072 * 0.02729 * 14 13 12
16 16 N 1.28514 * 110.20666 * 179.97438 * 15 14 13
17 17 C 1.33094 * 109.74323 * 0.02562 * 16 15 14
18 18 C 1.39783 * 126.56308 * 180.02562 * 17 16 15
19 19 H 1.08000 * 119.99959 * 179.97438 * 18 17 16
20 20 C 1.40075 * 119.99790 * 359.96933 * 18 17 16
21 21 N 1.30813 * 120.00192 * 0.02562 * 20 18 17
22 22 Si 1.86799 * 119.99818 * 180.02562 * 20 18 17
23 23 H 1.48497 * 109.47384 * 359.97438 * 22 20 18
24 24 H 1.48499 * 109.47245 * 120.00051 * 22 20 18
25 25 H 1.48504 * 109.47207 * 239.99832 * 22 20 18
26 26 N 1.36675 * 126.25895 * 179.71526 * 14 13 12
27 27 C 1.46501 * 127.15233 * 359.96830 * 26 14 13
28 28 H 1.09003 * 109.47055 * 59.99725 * 1 2 3
29 29 H 1.09005 * 109.47349 * 180.02562 * 1 2 3
30 30 H 1.09004 * 109.46758 * 299.99797 * 1 2 3
31 31 H 1.07997 * 120.07696 * 0.02562 * 6 5 3
32 32 H 1.07997 * 119.92320 * 179.97438 * 7 6 5
33 33 H 1.08006 * 119.84599 * 180.27595 * 8 7 6
34 34 H 1.08004 * 119.92794 * 179.72451 * 9 8 7
35 35 H 1.09001 * 109.46950 * 218.12554 * 11 10 9
36 36 H 1.09003 * 109.47054 * 338.11987 * 11 10 9
37 37 H 1.09007 * 109.46729 * 299.99836 * 12 11 10
38 38 H 1.08999 * 109.47403 * 59.99383 * 12 11 10
39 39 H 0.97003 * 120.00052 * 179.97438 * 21 20 18
40 40 H 1.09002 * 109.47087 * 90.02183 * 27 26 14
41 41 H 1.08989 * 109.47170 * 210.02664 * 27 26 14
42 42 H 1.09001 * 109.46702 * 330.02820 * 27 26 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0636 1.2003 0.0000
4 8 1.4020 2.2190 0.0005
5 6 3.5388 1.2775 -0.0006
6 6 4.3021 0.1140 -0.1184
7 6 5.6790 0.1933 -0.1177
8 6 6.3043 1.4229 -0.0062
9 6 5.5544 2.5788 0.1167
10 6 4.1763 2.5140 0.1173
11 6 3.3609 3.7750 0.2445
12 6 2.9063 4.2306 -1.1434
13 16 1.9264 5.7447 -0.9905
14 6 1.5468 6.0360 -2.6864
15 7 1.9240 5.2895 -3.7126
16 7 1.4758 5.7850 -4.8104
17 6 0.7783 6.8891 -4.5536
18 6 0.1366 7.7052 -5.4896
19 1 -0.4035 8.5812 -5.1620
20 6 0.1941 7.3869 -6.8525
21 7 0.8479 6.3256 -7.2493
22 14 -0.6629 8.4779 -8.1034
23 1 -1.3276 9.6061 -7.4032
24 1 0.3373 9.0107 -9.0631
25 1 -1.6800 7.6838 -8.8384
26 7 0.8041 7.0706 -3.1823
27 6 0.1693 8.1489 -2.4204
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3634 -1.0277 0.0005
30 1 -0.3633 0.5138 0.8900
31 1 3.8153 -0.8457 -0.2099
32 1 6.2705 -0.7057 -0.2084
33 1 7.3829 1.4798 -0.0107
34 1 6.0488 3.5348 0.2078
35 1 2.4876 3.5816 0.8676
36 1 3.9682 4.5557 0.7025
37 1 3.7797 4.4240 -1.7664
38 1 2.2991 3.4499 -1.6014
39 1 0.8874 6.1050 -8.1931
40 1 0.8638 8.9836 -2.3246
41 1 -0.7288 8.4814 -2.9406
42 1 -0.0990 7.7840 -1.4289
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000279869154.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:10:16
Heat of formation + Delta-G solvation = 10.827767 kcal
Electronic energy + Delta-G solvation = -27083.942722 eV
Core-core repulsion = 23156.652151 eV
Total energy + Delta-G solvation = -3927.290571 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-40.81247 -40.42398 -39.01625 -36.58760 -34.02536 -33.63307 -33.22010 -31.70510
-29.71011 -29.20498 -27.78108 -26.45061 -25.54928 -24.43900 -23.58270 -21.77897
-20.84378 -20.66264 -20.18096 -18.03190 -17.29101 -17.02512 -16.51511 -16.07855
-15.98791 -15.56014 -15.36770 -14.88214 -14.66712 -14.42049 -14.01084 -13.89765
-13.64313 -13.37483 -13.28791 -12.88549 -12.65203 -12.25472 -12.24136 -12.14989
-12.05575 -11.82904 -11.43845 -11.33392 -11.24662 -11.08090 -10.88863 -10.76185
-10.32280 -10.17212 -9.95786 -9.62698 -9.56953 -9.23330 -8.98182 -8.61534
-8.33089 -8.30206 -6.70843 -6.60198 -4.51299 0.54635 1.11660 2.21787
2.47931 2.59842 2.93984 2.99048 3.08735 3.13408 3.42997 3.58051
3.90946 4.30582 4.48856 4.50216 4.62161 4.69031 4.80346 5.02614
5.07624 5.12957 5.19701 5.31975 5.35578 5.38303 5.43758 5.54258
5.61699 5.72112 5.85530 5.94405 5.99492 6.06520 6.09535 6.15665
6.21592 6.40684 6.52133 6.65291 6.85346 6.94853 7.29801 7.55774
7.71570 7.96523 8.23461 8.75525 8.92604 10.32620 10.71888
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.014185 B = 0.002591 C = 0.002556
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1973.502060 B =10805.406600 C =10953.804754
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 O -0.359 6.359
3 C 0.498 3.502
4 O -0.479 6.479
5 C -0.123 4.123
6 C -0.061 4.061
7 C -0.140 4.140
8 C -0.082 4.082
9 C -0.126 4.126
10 C -0.007 4.007
11 C -0.077 4.077
12 C -0.071 4.071
13 S -0.056 6.056
14 C 0.053 3.947
15 N -0.287 5.287
16 N -0.334 5.334
17 C 0.345 3.655
18 C -0.448 4.448
19 H 0.084 0.916
20 C 0.078 3.922
21 N -0.738 5.738
22 Si 0.920 3.080
23 H -0.262 1.262
24 H -0.272 1.272
25 H -0.273 1.273
26 N -0.516 5.516
27 C 0.102 3.898
28 H 0.067 0.933
29 H 0.100 0.900
30 H 0.063 0.937
31 H 0.137 0.863
32 H 0.130 0.870
33 H 0.129 0.871
34 H 0.135 0.865
35 H 0.104 0.896
36 H 0.077 0.923
37 H 0.083 0.917
38 H 0.094 0.906
39 H 0.278 0.722
40 H 0.055 0.945
41 H 0.077 0.923
42 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.471 -10.073 16.035 19.711
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 O -0.276 6.276
3 C 0.343 3.657
4 O -0.367 6.367
5 C -0.124 4.124
6 C -0.079 4.079
7 C -0.158 4.158
8 C -0.100 4.100
9 C -0.144 4.144
10 C -0.009 4.009
11 C -0.115 4.115
12 C -0.220 4.220
13 S 0.172 5.828
14 C -0.319 4.319
15 N -0.133 5.133
16 N -0.181 5.181
17 C 0.100 3.900
18 C -0.488 4.488
19 H 0.102 0.898
20 C -0.147 4.147
21 N -0.362 5.362
22 Si 0.744 3.256
23 H -0.186 1.186
24 H -0.198 1.198
25 H -0.198 1.198
26 N -0.218 5.218
27 C -0.043 4.043
28 H 0.085 0.915
29 H 0.118 0.882
30 H 0.082 0.918
31 H 0.155 0.845
32 H 0.148 0.852
33 H 0.147 0.853
34 H 0.152 0.848
35 H 0.122 0.878
36 H 0.095 0.905
37 H 0.101 0.899
38 H 0.112 0.888
39 H 0.089 0.911
40 H 0.074 0.926
41 H 0.096 0.904
42 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 5.656 -10.440 16.052 19.967
hybrid contribution -0.941 0.940 -1.160 1.765
sum 4.715 -9.500 14.892 18.283
Atomic orbital electron populations
1.23280 0.75823 1.03562 1.02986 1.86499 1.23665 1.32829 1.84628
1.21222 0.89143 0.81655 0.73687 1.90903 1.66697 1.35018 1.44072
1.18968 0.89190 0.94570 1.09670 1.21436 0.93973 0.97739 0.94782
1.21139 0.94307 0.98191 1.02123 1.21433 1.00357 0.92398 0.95775
1.21089 0.92517 0.99283 1.01557 1.19917 0.93872 0.93375 0.93722
1.20628 1.00263 0.93326 0.97327 1.23091 1.02021 0.98059 0.98807
1.84226 1.67707 1.32224 0.98665 1.25355 1.10814 0.96865 0.98892
1.74543 1.19960 1.23707 0.95114 1.75448 1.19454 1.09965 1.13271
1.21631 0.95413 0.94208 0.78765 1.18122 1.31364 1.09544 0.89802
0.89819 1.25792 0.94630 0.95322 0.98966 1.70031 1.28638 1.20485
1.17055 0.86080 0.79396 0.80162 0.79958 1.18565 1.19763 1.19787
1.46055 1.45472 1.22844 1.07422 1.21482 0.97937 0.89211 0.95664
0.91466 0.88168 0.91812 0.84525 0.85224 0.85287 0.84762 0.87782
0.90485 0.89861 0.88771 0.91126 0.92613 0.90439 0.91513
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.36 10.56 101.05 1.07 1.43 16
2 O -0.36 -4.36 9.83 -40.52 -0.40 -4.76 16
3 C 0.50 7.01 7.77 34.61 0.27 7.28 16
4 O -0.48 -7.94 11.39 -19.24 -0.22 -8.15 16
5 C -0.12 -1.55 5.87 -104.98 -0.62 -2.17 16
6 C -0.06 -0.62 9.62 -39.17 -0.38 -1.00 16
7 C -0.14 -1.19 10.03 -39.64 -0.40 -1.59 16
8 C -0.08 -0.70 10.04 -39.49 -0.40 -1.10 16
9 C -0.13 -1.30 9.66 -39.64 -0.38 -1.68 16
10 C -0.01 -0.08 5.17 -104.21 -0.54 -0.62 16
11 C -0.08 -1.07 4.61 -27.88 -0.13 -1.20 16
12 C -0.07 -1.27 4.74 37.15 0.18 -1.09 16
13 S -0.06 -1.11 21.78 -107.50 -2.34 -3.45 16
14 C 0.05 1.35 8.09 -87.27 -0.71 0.65 16
15 N -0.29 -8.34 11.62 30.90 0.36 -7.98 16
16 N -0.33 -10.47 10.48 31.26 0.33 -10.15 16
17 C 0.34 10.03 7.53 -154.81 -1.17 8.86 16
18 C -0.45 -12.25 9.04 -38.32 -0.35 -12.60 16
19 H 0.08 2.08 7.31 -52.49 -0.38 1.70 16
20 C 0.08 2.05 5.50 -17.30 -0.10 1.96 16
21 N -0.74 -20.84 11.94 55.56 0.66 -20.17 16
22 Si 0.92 18.99 29.56 -169.99 -5.03 13.96 16
23 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16
24 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16
25 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16
26 N -0.52 -13.12 3.26 -123.18 -0.40 -13.53 16
27 C 0.10 1.97 10.87 59.85 0.65 2.62 16
28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16
30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16
31 H 0.14 1.17 7.62 -52.49 -0.40 0.77 16
32 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16
33 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16
34 H 0.13 1.15 8.05 -52.48 -0.42 0.73 16
35 H 0.10 1.53 5.95 -51.93 -0.31 1.22 16
36 H 0.08 0.92 8.02 -51.93 -0.42 0.50 16
37 H 0.08 1.56 8.14 -51.91 -0.42 1.14 16
38 H 0.09 1.94 6.59 -51.92 -0.34 1.60 16
39 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16
40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16
41 H 0.08 1.40 7.53 -51.94 -0.39 1.01 16
42 H 0.07 1.15 7.85 -51.93 -0.41 0.74 16
LS Contribution 374.32 15.07 5.64 5.64
Total: -1.00 -36.26 374.32 -9.55 -45.81
By element:
Atomic # 1 Polarization: 8.19 SS G_CDS: -5.17 Total: 3.02 kcal
Atomic # 6 Polarization: 2.74 SS G_CDS: -2.99 Total: -0.25 kcal
Atomic # 7 Polarization: -52.78 SS G_CDS: 0.95 Total: -51.83 kcal
Atomic # 8 Polarization: -12.30 SS G_CDS: -0.62 Total: -12.92 kcal
Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal
Atomic # 16 Polarization: -1.11 SS G_CDS: -2.34 Total: -3.45 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -36.26 -9.55 -45.81 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000279869154.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.641 kcal
(2) G-P(sol) polarization free energy of solvation -36.264 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.376 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.813 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.828 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds