Wall clock time and date at job start Wed Apr 1 2020 04:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34711 * 117.00112 * 2 1 4 4 O 1.21464 * 119.99931 * 0.02562 * 3 2 1 5 5 C 1.47725 * 119.99681 * 180.02562 * 3 2 1 6 6 C 1.39650 * 120.15317 * 5.57555 * 5 3 2 7 7 C 1.37924 * 119.84755 * 180.02562 * 6 5 3 8 8 C 1.38392 * 120.14845 * 359.72751 * 7 6 5 9 9 C 1.38341 * 120.30467 * 0.55453 * 8 7 6 10 10 C 1.37965 * 120.14890 * 359.44102 * 9 8 7 11 11 C 1.50706 * 120.07540 * 180.29913 * 10 9 8 12 12 C 1.52994 * 109.47211 * 98.12284 * 11 10 9 13 13 S 1.80995 * 109.47107 * 179.97438 * 12 11 10 14 14 C 1.76204 * 99.99880 * 179.97438 * 13 12 11 15 15 N 1.32391 * 126.26072 * 0.02729 * 14 13 12 16 16 N 1.28514 * 110.20666 * 179.97438 * 15 14 13 17 17 C 1.33094 * 109.74323 * 0.02562 * 16 15 14 18 18 C 1.39783 * 126.56308 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99959 * 179.97438 * 18 17 16 20 20 C 1.40075 * 119.99790 * 359.96933 * 18 17 16 21 21 N 1.30813 * 120.00192 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99818 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47384 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47245 * 120.00051 * 22 20 18 25 25 H 1.48504 * 109.47207 * 239.99832 * 22 20 18 26 26 N 1.36675 * 126.25895 * 179.71526 * 14 13 12 27 27 C 1.46501 * 127.15233 * 359.96830 * 26 14 13 28 28 H 1.09003 * 109.47055 * 59.99725 * 1 2 3 29 29 H 1.09005 * 109.47349 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46758 * 299.99797 * 1 2 3 31 31 H 1.07997 * 120.07696 * 0.02562 * 6 5 3 32 32 H 1.07997 * 119.92320 * 179.97438 * 7 6 5 33 33 H 1.08006 * 119.84599 * 180.27595 * 8 7 6 34 34 H 1.08004 * 119.92794 * 179.72451 * 9 8 7 35 35 H 1.09001 * 109.46950 * 218.12554 * 11 10 9 36 36 H 1.09003 * 109.47054 * 338.11987 * 11 10 9 37 37 H 1.09007 * 109.46729 * 299.99836 * 12 11 10 38 38 H 1.08999 * 109.47403 * 59.99383 * 12 11 10 39 39 H 0.97003 * 120.00052 * 179.97438 * 21 20 18 40 40 H 1.09002 * 109.47087 * 90.02183 * 27 26 14 41 41 H 1.08989 * 109.47170 * 210.02664 * 27 26 14 42 42 H 1.09001 * 109.46702 * 330.02820 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2775 -0.0006 6 6 4.3021 0.1140 -0.1184 7 6 5.6790 0.1933 -0.1177 8 6 6.3043 1.4229 -0.0062 9 6 5.5544 2.5788 0.1167 10 6 4.1763 2.5140 0.1173 11 6 3.3609 3.7750 0.2445 12 6 2.9063 4.2306 -1.1434 13 16 1.9264 5.7447 -0.9905 14 6 1.5468 6.0360 -2.6864 15 7 1.9240 5.2895 -3.7126 16 7 1.4758 5.7850 -4.8104 17 6 0.7783 6.8891 -4.5536 18 6 0.1366 7.7052 -5.4896 19 1 -0.4035 8.5812 -5.1620 20 6 0.1941 7.3869 -6.8525 21 7 0.8479 6.3256 -7.2493 22 14 -0.6629 8.4779 -8.1034 23 1 -1.3276 9.6061 -7.4032 24 1 0.3373 9.0107 -9.0631 25 1 -1.6800 7.6838 -8.8384 26 7 0.8041 7.0706 -3.1823 27 6 0.1693 8.1489 -2.4204 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.8153 -0.8457 -0.2099 32 1 6.2705 -0.7057 -0.2084 33 1 7.3829 1.4798 -0.0107 34 1 6.0488 3.5348 0.2078 35 1 2.4876 3.5816 0.8676 36 1 3.9682 4.5557 0.7025 37 1 3.7797 4.4240 -1.7664 38 1 2.2991 3.4499 -1.6014 39 1 0.8874 6.1050 -8.1931 40 1 0.8638 8.9836 -2.3246 41 1 -0.7288 8.4814 -2.9406 42 1 -0.0990 7.7840 -1.4289 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279869154.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:16 Heat of formation + Delta-G solvation = 10.827767 kcal Electronic energy + Delta-G solvation = -27083.942722 eV Core-core repulsion = 23156.652151 eV Total energy + Delta-G solvation = -3927.290571 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.81247 -40.42398 -39.01625 -36.58760 -34.02536 -33.63307 -33.22010 -31.70510 -29.71011 -29.20498 -27.78108 -26.45061 -25.54928 -24.43900 -23.58270 -21.77897 -20.84378 -20.66264 -20.18096 -18.03190 -17.29101 -17.02512 -16.51511 -16.07855 -15.98791 -15.56014 -15.36770 -14.88214 -14.66712 -14.42049 -14.01084 -13.89765 -13.64313 -13.37483 -13.28791 -12.88549 -12.65203 -12.25472 -12.24136 -12.14989 -12.05575 -11.82904 -11.43845 -11.33392 -11.24662 -11.08090 -10.88863 -10.76185 -10.32280 -10.17212 -9.95786 -9.62698 -9.56953 -9.23330 -8.98182 -8.61534 -8.33089 -8.30206 -6.70843 -6.60198 -4.51299 0.54635 1.11660 2.21787 2.47931 2.59842 2.93984 2.99048 3.08735 3.13408 3.42997 3.58051 3.90946 4.30582 4.48856 4.50216 4.62161 4.69031 4.80346 5.02614 5.07624 5.12957 5.19701 5.31975 5.35578 5.38303 5.43758 5.54258 5.61699 5.72112 5.85530 5.94405 5.99492 6.06520 6.09535 6.15665 6.21592 6.40684 6.52133 6.65291 6.85346 6.94853 7.29801 7.55774 7.71570 7.96523 8.23461 8.75525 8.92604 10.32620 10.71888 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014185 B = 0.002591 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.502060 B =10805.406600 C =10953.804754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.359 6.359 3 C 0.498 3.502 4 O -0.479 6.479 5 C -0.123 4.123 6 C -0.061 4.061 7 C -0.140 4.140 8 C -0.082 4.082 9 C -0.126 4.126 10 C -0.007 4.007 11 C -0.077 4.077 12 C -0.071 4.071 13 S -0.056 6.056 14 C 0.053 3.947 15 N -0.287 5.287 16 N -0.334 5.334 17 C 0.345 3.655 18 C -0.448 4.448 19 H 0.084 0.916 20 C 0.078 3.922 21 N -0.738 5.738 22 Si 0.920 3.080 23 H -0.262 1.262 24 H -0.272 1.272 25 H -0.273 1.273 26 N -0.516 5.516 27 C 0.102 3.898 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.135 0.865 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.278 0.722 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.471 -10.073 16.035 19.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.276 6.276 3 C 0.343 3.657 4 O -0.367 6.367 5 C -0.124 4.124 6 C -0.079 4.079 7 C -0.158 4.158 8 C -0.100 4.100 9 C -0.144 4.144 10 C -0.009 4.009 11 C -0.115 4.115 12 C -0.220 4.220 13 S 0.172 5.828 14 C -0.319 4.319 15 N -0.133 5.133 16 N -0.181 5.181 17 C 0.100 3.900 18 C -0.488 4.488 19 H 0.102 0.898 20 C -0.147 4.147 21 N -0.362 5.362 22 Si 0.744 3.256 23 H -0.186 1.186 24 H -0.198 1.198 25 H -0.198 1.198 26 N -0.218 5.218 27 C -0.043 4.043 28 H 0.085 0.915 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.155 0.845 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.122 0.878 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.656 -10.440 16.052 19.967 hybrid contribution -0.941 0.940 -1.160 1.765 sum 4.715 -9.500 14.892 18.283 Atomic orbital electron populations 1.23280 0.75823 1.03562 1.02986 1.86499 1.23665 1.32829 1.84628 1.21222 0.89143 0.81655 0.73687 1.90903 1.66697 1.35018 1.44072 1.18968 0.89190 0.94570 1.09670 1.21436 0.93973 0.97739 0.94782 1.21139 0.94307 0.98191 1.02123 1.21433 1.00357 0.92398 0.95775 1.21089 0.92517 0.99283 1.01557 1.19917 0.93872 0.93375 0.93722 1.20628 1.00263 0.93326 0.97327 1.23091 1.02021 0.98059 0.98807 1.84226 1.67707 1.32224 0.98665 1.25355 1.10814 0.96865 0.98892 1.74543 1.19960 1.23707 0.95114 1.75448 1.19454 1.09965 1.13271 1.21631 0.95413 0.94208 0.78765 1.18122 1.31364 1.09544 0.89802 0.89819 1.25792 0.94630 0.95322 0.98966 1.70031 1.28638 1.20485 1.17055 0.86080 0.79396 0.80162 0.79958 1.18565 1.19763 1.19787 1.46055 1.45472 1.22844 1.07422 1.21482 0.97937 0.89211 0.95664 0.91466 0.88168 0.91812 0.84525 0.85224 0.85287 0.84762 0.87782 0.90485 0.89861 0.88771 0.91126 0.92613 0.90439 0.91513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -4.36 9.83 -40.52 -0.40 -4.76 16 3 C 0.50 7.01 7.77 34.61 0.27 7.28 16 4 O -0.48 -7.94 11.39 -19.24 -0.22 -8.15 16 5 C -0.12 -1.55 5.87 -104.98 -0.62 -2.17 16 6 C -0.06 -0.62 9.62 -39.17 -0.38 -1.00 16 7 C -0.14 -1.19 10.03 -39.64 -0.40 -1.59 16 8 C -0.08 -0.70 10.04 -39.49 -0.40 -1.10 16 9 C -0.13 -1.30 9.66 -39.64 -0.38 -1.68 16 10 C -0.01 -0.08 5.17 -104.21 -0.54 -0.62 16 11 C -0.08 -1.07 4.61 -27.88 -0.13 -1.20 16 12 C -0.07 -1.27 4.74 37.15 0.18 -1.09 16 13 S -0.06 -1.11 21.78 -107.50 -2.34 -3.45 16 14 C 0.05 1.35 8.09 -87.27 -0.71 0.65 16 15 N -0.29 -8.34 11.62 30.90 0.36 -7.98 16 16 N -0.33 -10.47 10.48 31.26 0.33 -10.15 16 17 C 0.34 10.03 7.53 -154.81 -1.17 8.86 16 18 C -0.45 -12.25 9.04 -38.32 -0.35 -12.60 16 19 H 0.08 2.08 7.31 -52.49 -0.38 1.70 16 20 C 0.08 2.05 5.50 -17.30 -0.10 1.96 16 21 N -0.74 -20.84 11.94 55.56 0.66 -20.17 16 22 Si 0.92 18.99 29.56 -169.99 -5.03 13.96 16 23 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 24 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 25 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 26 N -0.52 -13.12 3.26 -123.18 -0.40 -13.53 16 27 C 0.10 1.97 10.87 59.85 0.65 2.62 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.14 1.17 7.62 -52.49 -0.40 0.77 16 32 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 34 H 0.13 1.15 8.05 -52.48 -0.42 0.73 16 35 H 0.10 1.53 5.95 -51.93 -0.31 1.22 16 36 H 0.08 0.92 8.02 -51.93 -0.42 0.50 16 37 H 0.08 1.56 8.14 -51.91 -0.42 1.14 16 38 H 0.09 1.94 6.59 -51.92 -0.34 1.60 16 39 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.08 1.40 7.53 -51.94 -0.39 1.01 16 42 H 0.07 1.15 7.85 -51.93 -0.41 0.74 16 LS Contribution 374.32 15.07 5.64 5.64 Total: -1.00 -36.26 374.32 -9.55 -45.81 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -5.17 Total: 3.02 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -2.99 Total: -0.25 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: 0.95 Total: -51.83 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.62 Total: -12.92 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Atomic # 16 Polarization: -1.11 SS G_CDS: -2.34 Total: -3.45 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.26 -9.55 -45.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279869154.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.641 kcal (2) G-P(sol) polarization free energy of solvation -36.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds