Wall clock time and date at job start Wed Apr 1 2020 04:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34711 * 117.00112 * 2 1 4 4 O 1.21464 * 119.99931 * 0.02562 * 3 2 1 5 5 C 1.47725 * 119.99681 * 180.02562 * 3 2 1 6 6 C 1.39650 * 120.15317 * 5.57555 * 5 3 2 7 7 C 1.37924 * 119.84755 * 180.02562 * 6 5 3 8 8 C 1.38392 * 120.14845 * 359.72751 * 7 6 5 9 9 C 1.38341 * 120.30467 * 0.55453 * 8 7 6 10 10 C 1.37965 * 120.14890 * 359.44102 * 9 8 7 11 11 C 1.50706 * 120.07540 * 180.29913 * 10 9 8 12 12 C 1.52994 * 109.47211 * 98.12284 * 11 10 9 13 13 S 1.80995 * 109.47107 * 179.97438 * 12 11 10 14 14 C 1.76204 * 99.99880 * 179.97438 * 13 12 11 15 15 N 1.32391 * 126.26072 * 0.02729 * 14 13 12 16 16 N 1.28514 * 110.20666 * 179.97438 * 15 14 13 17 17 C 1.33094 * 109.74323 * 0.02562 * 16 15 14 18 18 C 1.39783 * 126.56308 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99959 * 179.97438 * 18 17 16 20 20 C 1.40075 * 119.99790 * 359.96933 * 18 17 16 21 21 N 1.30813 * 120.00192 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99818 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47384 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47245 * 120.00051 * 22 20 18 25 25 H 1.48504 * 109.47207 * 239.99832 * 22 20 18 26 26 N 1.36675 * 126.25895 * 179.71526 * 14 13 12 27 27 C 1.46501 * 127.15233 * 359.96830 * 26 14 13 28 28 H 1.09003 * 109.47055 * 59.99725 * 1 2 3 29 29 H 1.09005 * 109.47349 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46758 * 299.99797 * 1 2 3 31 31 H 1.07997 * 120.07696 * 0.02562 * 6 5 3 32 32 H 1.07997 * 119.92320 * 179.97438 * 7 6 5 33 33 H 1.08006 * 119.84599 * 180.27595 * 8 7 6 34 34 H 1.08004 * 119.92794 * 179.72451 * 9 8 7 35 35 H 1.09001 * 109.46950 * 218.12554 * 11 10 9 36 36 H 1.09003 * 109.47054 * 338.11987 * 11 10 9 37 37 H 1.09007 * 109.46729 * 299.99836 * 12 11 10 38 38 H 1.08999 * 109.47403 * 59.99383 * 12 11 10 39 39 H 0.97003 * 120.00052 * 179.97438 * 21 20 18 40 40 H 1.09002 * 109.47087 * 90.02183 * 27 26 14 41 41 H 1.08989 * 109.47170 * 210.02664 * 27 26 14 42 42 H 1.09001 * 109.46702 * 330.02820 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2775 -0.0006 6 6 4.3021 0.1140 -0.1184 7 6 5.6790 0.1933 -0.1177 8 6 6.3043 1.4229 -0.0062 9 6 5.5544 2.5788 0.1167 10 6 4.1763 2.5140 0.1173 11 6 3.3609 3.7750 0.2445 12 6 2.9063 4.2306 -1.1434 13 16 1.9264 5.7447 -0.9905 14 6 1.5468 6.0360 -2.6864 15 7 1.9240 5.2895 -3.7126 16 7 1.4758 5.7850 -4.8104 17 6 0.7783 6.8891 -4.5536 18 6 0.1366 7.7052 -5.4896 19 1 -0.4035 8.5812 -5.1620 20 6 0.1941 7.3869 -6.8525 21 7 0.8479 6.3256 -7.2493 22 14 -0.6629 8.4779 -8.1034 23 1 -1.3276 9.6061 -7.4032 24 1 0.3373 9.0107 -9.0631 25 1 -1.6800 7.6838 -8.8384 26 7 0.8041 7.0706 -3.1823 27 6 0.1693 8.1489 -2.4204 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.8153 -0.8457 -0.2099 32 1 6.2705 -0.7057 -0.2084 33 1 7.3829 1.4798 -0.0107 34 1 6.0488 3.5348 0.2078 35 1 2.4876 3.5816 0.8676 36 1 3.9682 4.5557 0.7025 37 1 3.7797 4.4240 -1.7664 38 1 2.2991 3.4499 -1.6014 39 1 0.8874 6.1050 -8.1931 40 1 0.8638 8.9836 -2.3246 41 1 -0.7288 8.4814 -2.9406 42 1 -0.0990 7.7840 -1.4289 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279869154.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:15 Heat of formation + Delta-G solvation = -10.025465 kcal Electronic energy + Delta-G solvation = -27084.846986 eV Core-core repulsion = 23156.652151 eV Total energy + Delta-G solvation = -3928.194835 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.47014 -41.79288 -39.87500 -37.61539 -35.64752 -35.27248 -34.94860 -32.51630 -31.36078 -30.64748 -28.64814 -28.27766 -27.46038 -25.50249 -24.55759 -22.87310 -22.72623 -22.26345 -21.50343 -19.27833 -18.94825 -18.01427 -17.91630 -17.45240 -17.21689 -16.89263 -16.70303 -16.41040 -16.15818 -15.71835 -15.32150 -15.13179 -14.97629 -14.65170 -14.28946 -13.96811 -13.93770 -13.88069 -13.72935 -13.16549 -13.14576 -12.99566 -12.98826 -12.79793 -12.63830 -12.50469 -12.12514 -11.94133 -11.80811 -11.74728 -11.60874 -11.46600 -11.12269 -10.59074 -10.38422 -10.28780 -10.02572 -9.80795 -8.55742 -8.52359 -6.60338 -0.32455 0.28094 0.54840 1.17518 1.30801 1.40250 1.51820 1.58901 1.59622 1.69072 2.17464 2.43074 2.49560 2.75840 3.32362 3.63603 3.74256 3.84270 4.00772 4.04522 4.07138 4.16918 4.27751 4.28999 4.40455 4.42905 4.45436 4.54143 4.58743 4.65763 4.78923 4.84125 4.87799 4.94058 4.96399 5.05823 5.30483 5.31203 5.31410 5.47284 5.54558 5.55075 5.90872 6.00939 6.20496 6.68556 6.74061 6.90943 8.40332 8.62618 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014185 B = 0.002591 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.502060 B =10805.406600 C =10953.804754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.494 3.506 4 O -0.516 6.516 5 C -0.148 4.148 6 C -0.065 4.065 7 C -0.132 4.132 8 C -0.075 4.075 9 C -0.131 4.131 10 C -0.030 4.030 11 C -0.064 4.064 12 C -0.062 4.062 13 S -0.008 6.008 14 C 0.057 3.943 15 N -0.334 5.334 16 N -0.390 5.390 17 C 0.316 3.684 18 C -0.471 4.471 19 H 0.104 0.896 20 C 0.027 3.973 21 N -0.789 5.789 22 Si 1.010 2.990 23 H -0.245 1.245 24 H -0.266 1.266 25 H -0.267 1.267 26 N -0.522 5.522 27 C 0.094 3.906 28 H 0.047 0.953 29 H 0.137 0.863 30 H 0.066 0.934 31 H 0.149 0.851 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.151 0.849 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.284 0.716 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.281 -9.710 17.236 20.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.275 6.275 3 C 0.340 3.660 4 O -0.406 6.406 5 C -0.149 4.149 6 C -0.083 4.083 7 C -0.150 4.150 8 C -0.093 4.093 9 C -0.149 4.149 10 C -0.032 4.032 11 C -0.103 4.103 12 C -0.212 4.212 13 S 0.219 5.781 14 C -0.317 4.317 15 N -0.178 5.178 16 N -0.236 5.236 17 C 0.069 3.931 18 C -0.511 4.511 19 H 0.122 0.878 20 C -0.194 4.194 21 N -0.415 5.415 22 Si 0.828 3.172 23 H -0.167 1.167 24 H -0.191 1.191 25 H -0.192 1.192 26 N -0.224 5.224 27 C -0.049 4.049 28 H 0.066 0.934 29 H 0.155 0.845 30 H 0.085 0.915 31 H 0.167 0.833 32 H 0.181 0.819 33 H 0.181 0.819 34 H 0.169 0.831 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.466 -10.086 17.285 21.031 hybrid contribution -1.112 0.696 -1.351 1.883 sum 5.354 -9.390 15.934 19.254 Atomic orbital electron populations 1.23512 0.74709 1.05713 1.02186 1.86496 1.24814 1.31977 1.84178 1.21680 0.89993 0.81597 0.72718 1.90869 1.67586 1.36116 1.46061 1.19121 0.88508 0.95792 1.11478 1.21675 0.94892 0.97375 0.94374 1.21576 0.93706 0.99613 1.00082 1.21870 1.02019 0.91645 0.93749 1.21366 0.91578 1.00956 1.01021 1.19903 0.94850 0.92518 0.95958 1.20495 1.00529 0.94944 0.94316 1.23122 1.00560 0.96237 1.01258 1.83982 1.67596 1.32715 0.93775 1.26421 1.08366 0.95664 1.01229 1.74416 1.22238 1.25437 0.95740 1.75299 1.21515 1.11828 1.14952 1.22090 0.95963 0.94392 0.80633 1.18664 1.31781 1.10139 0.90533 0.87812 1.27041 0.94748 0.96603 1.00963 1.70180 1.30413 1.22872 1.17996 0.84768 0.77984 0.78009 0.76426 1.16740 1.19075 1.19208 1.46395 1.45308 1.23803 1.06892 1.21851 0.98605 0.88328 0.96112 0.93364 0.84523 0.91548 0.83279 0.81894 0.81922 0.83148 0.88795 0.88278 0.90966 0.91818 0.90552 0.90567 0.89231 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.56 113.37 1.20 1.84 16 2 O -0.36 -8.87 9.83 -56.21 -0.55 -9.42 16 3 C 0.49 14.48 7.77 70.33 0.55 15.03 16 4 O -0.52 -18.09 11.39 19.95 0.23 -17.86 16 5 C -0.15 -3.76 5.87 -20.10 -0.12 -3.87 16 6 C -0.07 -1.23 9.62 22.54 0.22 -1.01 16 7 C -0.13 -1.84 10.03 22.23 0.22 -1.62 16 8 C -0.08 -1.05 10.04 22.33 0.22 -0.83 16 9 C -0.13 -2.45 9.66 22.23 0.21 -2.23 16 10 C -0.03 -0.75 5.17 -19.60 -0.10 -0.85 16 11 C -0.06 -1.79 4.61 29.85 0.14 -1.66 16 12 C -0.06 -2.32 4.74 71.98 0.34 -1.98 16 13 S -0.01 -0.32 21.78 -56.49 -1.23 -1.55 16 14 C 0.06 3.00 8.09 179.18 1.45 4.45 16 15 N -0.33 -20.38 11.62 -56.17 -0.65 -21.03 16 16 N -0.39 -25.69 10.48 -55.02 -0.58 -26.27 16 17 C 0.32 18.98 7.53 133.23 1.00 19.98 16 18 C -0.47 -26.15 9.04 23.09 0.21 -25.94 16 19 H 0.10 5.10 7.31 -2.91 -0.02 5.08 16 20 C 0.03 1.43 5.50 85.29 0.47 1.90 16 21 N -0.79 -46.24 11.94 21.85 0.26 -45.98 16 22 Si 1.01 38.82 29.56 68.60 2.03 40.85 16 23 H -0.24 -8.62 7.11 99.48 0.71 -7.91 16 24 H -0.27 -9.86 7.11 99.48 0.71 -9.16 16 25 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 26 N -0.52 -26.96 3.26 -543.61 -1.77 -28.74 16 27 C 0.09 3.51 10.87 127.77 1.39 4.90 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.14 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.15 2.34 7.62 -2.91 -0.02 2.31 16 32 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 33 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 34 H 0.15 2.22 8.05 -2.91 -0.02 2.20 16 35 H 0.09 2.83 5.95 -2.39 -0.01 2.82 16 36 H 0.10 2.25 8.02 -2.39 -0.02 2.23 16 37 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 38 H 0.06 2.79 6.59 -2.40 -0.02 2.77 16 39 H 0.28 14.95 8.30 -92.71 -0.77 14.18 16 40 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.09 3.12 7.53 -2.39 -0.02 3.10 16 42 H 0.09 2.90 7.85 -2.39 -0.02 2.88 16 Total: -1.00 -85.17 374.32 6.19 -78.98 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 1.05 Total: 22.92 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 7.40 Total: 8.10 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -2.74 Total: -122.01 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.33 Total: -27.29 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Atomic # 16 Polarization: -0.32 SS G_CDS: -1.23 Total: -1.55 kcal Total: -85.17 6.19 -78.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279869154.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.953 kcal (2) G-P(sol) polarization free energy of solvation -85.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds