Wall clock time and date at job start Wed Apr 1 2020 04:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.38351 * 127.15092 * 2 1 4 4 C 1.39771 * 126.56590 * 359.97438 * 3 2 1 5 5 H 1.08004 * 120.00111 * 7.90962 * 4 3 2 6 6 C 1.40084 * 120.00218 * 187.90579 * 4 3 2 7 7 N 1.30817 * 119.99946 * 191.23483 * 6 4 3 8 8 Si 1.86798 * 119.99751 * 11.23165 * 6 4 3 9 9 H 1.48506 * 109.46877 * 270.00124 * 8 6 4 10 10 H 1.48499 * 109.47207 * 29.99996 * 8 6 4 11 11 H 1.48496 * 109.47289 * 150.00071 * 8 6 4 12 12 N 1.33095 * 106.86805 * 179.73687 * 3 2 1 13 13 N 1.28516 * 109.75073 * 0.23892 * 12 3 2 14 14 C 1.32394 * 110.20034 * 0.02562 * 13 12 3 15 15 S 1.76200 * 126.25874 * 180.02562 * 14 13 12 16 16 C 1.81001 * 99.99813 * 359.97384 * 15 14 13 17 17 C 1.52998 * 109.47038 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47333 * 180.02562 * 17 16 15 19 19 O 1.20834 * 119.99988 * 359.97438 * 18 17 16 20 20 O 1.34229 * 120.00566 * 179.97438 * 18 17 16 21 21 C 1.45192 * 117.00565 * 179.97438 * 20 18 17 22 22 C 1.50703 * 109.47414 * 180.02562 * 21 20 18 23 23 C 1.38234 * 119.99732 * 269.72978 * 22 21 20 24 24 C 1.38237 * 119.99796 * 179.76441 * 23 22 21 25 25 C 1.38238 * 119.99902 * 0.50759 * 24 23 22 26 26 C 1.38241 * 119.99724 * 359.74495 * 25 24 23 27 27 C 1.38225 * 119.99979 * 90.00324 * 22 21 20 28 28 H 1.09004 * 109.46941 * 90.00466 * 1 2 3 29 29 H 1.09008 * 109.47284 * 209.99945 * 1 2 3 30 30 H 1.08993 * 109.47266 * 330.00347 * 1 2 3 31 31 H 0.96998 * 119.99838 * 354.77302 * 7 6 4 32 32 H 1.09004 * 109.47482 * 299.99714 * 16 15 14 33 33 H 1.08994 * 109.47277 * 59.99785 * 16 15 14 34 34 H 1.09003 * 109.47123 * 299.99625 * 17 16 15 35 35 H 1.08994 * 109.47549 * 59.99600 * 17 16 15 36 36 H 1.09002 * 109.47227 * 300.00436 * 21 20 18 37 37 H 1.09007 * 109.46890 * 60.00202 * 21 20 18 38 38 H 1.07998 * 120.00229 * 359.97438 * 23 22 21 39 39 H 1.07999 * 120.00248 * 180.23003 * 24 23 22 40 40 H 1.08002 * 119.99834 * 179.72372 * 25 24 23 41 41 H 1.08002 * 119.99298 * 179.97438 * 26 25 24 42 42 H 1.08001 * 120.00335 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3005 1.1027 0.0000 4 6 1.9086 2.4444 -0.0005 5 1 0.8679 2.7030 0.1278 6 6 2.8657 3.4536 -0.1673 7 7 2.5435 4.7028 0.0494 8 14 4.6020 3.0155 -0.6990 9 1 5.4387 2.7639 0.5018 10 1 4.5678 1.7943 -1.5433 11 1 5.1797 4.1399 -1.4782 12 7 3.5489 0.6414 0.0058 13 7 3.5370 -0.6438 0.0043 14 6 2.2903 -1.0894 -0.0031 15 16 1.7873 -2.7780 -0.0072 16 6 3.4058 -3.5881 0.0007 17 6 3.2163 -5.1063 -0.0023 18 6 4.5638 -5.7809 0.0049 19 8 5.5725 -5.1156 0.0112 20 8 4.6438 -7.1208 0.0043 21 6 5.9743 -7.7019 0.0109 22 6 5.8661 -9.2050 0.0085 23 6 5.8156 -9.8961 1.2046 24 6 5.7115 -11.2746 1.2025 25 6 5.6684 -11.9626 0.0042 26 6 5.7242 -11.2717 -1.1918 27 6 5.8231 -9.8929 -1.1896 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5137 31 1 1.6246 4.9386 0.2514 32 1 3.9655 -3.2906 -0.8862 33 1 3.9560 -3.2920 0.8937 34 1 2.6566 -5.4043 0.8844 35 1 2.6662 -5.4021 -0.8955 36 1 6.5177 -7.3757 -0.8760 37 1 6.5082 -7.3770 0.9040 38 1 5.8541 -9.3590 2.1407 39 1 5.6683 -11.8143 2.1369 40 1 5.5916 -13.0399 0.0026 41 1 5.6910 -11.8094 -2.1279 42 1 5.8666 -9.3533 -2.1241 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280007853.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:22 Heat of formation + Delta-G solvation = -6.662884 kcal Electronic energy + Delta-G solvation = -25670.340944 eV Core-core repulsion = 21742.291922 eV Total energy + Delta-G solvation = -3928.049022 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.92846 -40.76018 -39.51401 -36.81460 -33.95419 -33.64753 -33.24539 -32.45470 -31.35337 -30.01922 -27.32316 -26.76206 -25.59315 -24.61525 -23.03872 -21.80710 -21.46497 -20.93051 -20.08358 -18.20558 -18.03432 -17.51195 -16.96739 -16.59204 -16.49151 -15.59835 -15.51150 -15.20490 -15.05648 -14.53232 -14.12483 -13.85382 -13.82476 -13.49887 -13.45192 -13.11774 -13.04469 -12.76788 -12.60417 -12.44225 -12.42499 -11.93362 -11.66053 -11.55917 -11.53957 -11.10517 -10.92398 -10.87482 -10.66720 -10.41297 -9.93416 -9.60930 -9.38800 -9.36362 -9.30634 -9.04501 -8.67326 -8.39989 -7.44549 -7.12613 -4.83848 0.72552 0.96134 1.63715 2.03908 2.47933 2.66437 2.89686 3.43345 3.53705 3.60649 3.89416 4.02418 4.10829 4.20641 4.35470 4.38508 4.45324 4.55972 4.67969 4.77461 4.77628 4.83007 5.04179 5.09095 5.09606 5.19483 5.25980 5.36479 5.49842 5.58697 5.62435 5.71547 5.89292 5.97413 6.03914 6.05964 6.11252 6.19458 6.38150 6.52009 6.64734 7.11760 7.39403 7.52998 7.56260 8.04042 8.35025 8.55213 9.95317 10.11710 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.025446 B = 0.001758 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.092409 B =15924.858102 C =16682.852051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.512 5.512 3 C 0.344 3.656 4 C -0.494 4.494 5 H 0.083 0.917 6 C 0.067 3.933 7 N -0.806 5.806 8 Si 1.104 2.896 9 H -0.277 1.277 10 H -0.255 1.255 11 H -0.310 1.310 12 N -0.409 5.409 13 N -0.266 5.266 14 C 0.062 3.938 15 S -0.039 6.039 16 C -0.088 4.088 17 C -0.097 4.097 18 C 0.466 3.534 19 O -0.495 6.495 20 O -0.353 6.353 21 C 0.107 3.893 22 C -0.096 4.096 23 C -0.095 4.095 24 C -0.124 4.124 25 C -0.111 4.111 26 C -0.124 4.124 27 C -0.095 4.095 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.284 0.716 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.251 -29.466 -0.402 29.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.213 5.213 3 C 0.101 3.899 4 C -0.534 4.534 5 H 0.101 0.899 6 C -0.156 4.156 7 N -0.430 5.430 8 Si 0.931 3.069 9 H -0.203 1.203 10 H -0.180 1.180 11 H -0.240 1.240 12 N -0.259 5.259 13 N -0.109 5.109 14 C -0.311 4.311 15 S 0.188 5.812 16 C -0.237 4.237 17 C -0.136 4.136 18 C 0.307 3.693 19 O -0.382 6.382 20 O -0.271 6.271 21 C 0.034 3.966 22 C -0.096 4.096 23 C -0.113 4.113 24 C -0.142 4.142 25 C -0.129 4.129 26 C -0.142 4.142 27 C -0.113 4.113 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.419 -29.087 -0.638 29.194 hybrid contribution -1.974 0.147 0.461 2.033 sum 0.445 -28.940 -0.177 28.944 Atomic orbital electron populations 1.21537 0.77794 1.02909 1.02020 1.45852 1.06391 1.04875 1.64230 1.21677 0.85088 0.89005 0.94130 1.19368 0.97878 0.87258 1.48938 0.89894 1.27302 1.07363 0.91360 0.89606 1.70659 1.22395 1.19071 1.30901 0.82919 0.71167 0.73811 0.78983 1.20251 1.18020 1.23994 1.74239 1.15995 1.00838 1.34850 1.74317 1.15336 1.05650 1.15640 1.25274 0.90931 0.92901 1.22023 1.84306 1.09762 0.91473 1.95628 1.23103 0.98039 0.93736 1.08832 1.21073 0.92356 0.93288 1.06926 1.23579 0.92472 0.80574 0.72688 1.90749 1.37953 1.65127 1.44334 1.86559 1.33508 1.22694 1.84291 1.21819 0.82020 0.89037 1.03736 1.19530 1.02817 0.93377 0.93914 1.21127 0.98119 0.94480 0.97573 1.21181 1.00451 0.94165 0.98367 1.21261 0.98925 1.00115 0.92604 1.21182 1.00451 0.94145 0.98386 1.21124 0.98126 0.94493 0.97547 0.92120 0.91199 0.90296 0.90503 0.87969 0.88002 0.86729 0.86697 0.90079 0.90080 0.85680 0.85685 0.85841 0.85683 0.85676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.78 10.89 59.85 0.65 2.44 16 2 N -0.51 -11.87 3.26 -123.18 -0.40 -12.27 16 3 C 0.34 9.24 7.21 -154.82 -1.12 8.12 16 4 C -0.49 -13.30 9.47 -38.32 -0.36 -13.66 16 5 H 0.08 2.16 7.46 -52.48 -0.39 1.77 16 6 C 0.07 1.81 5.52 -17.29 -0.10 1.72 16 7 N -0.81 -21.74 13.65 55.56 0.76 -20.98 16 8 Si 1.10 27.99 26.40 -169.99 -4.49 23.50 16 9 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.26 -6.76 6.25 56.52 0.35 -6.40 16 11 H -0.31 -7.51 7.11 56.52 0.40 -7.11 16 12 N -0.41 -11.53 7.50 31.26 0.23 -11.29 16 13 N -0.27 -6.93 11.62 30.89 0.36 -6.57 16 14 C 0.06 1.41 8.09 -87.27 -0.71 0.70 16 15 S -0.04 -0.63 21.79 -107.50 -2.34 -2.97 16 16 C -0.09 -1.29 4.51 37.16 0.17 -1.13 16 17 C -0.10 -1.01 5.81 -27.88 -0.16 -1.17 16 18 C 0.47 5.60 7.96 36.00 0.29 5.88 16 19 O -0.50 -7.67 15.73 -18.76 -0.30 -7.96 16 20 O -0.35 -3.76 10.20 -39.26 -0.40 -4.16 16 21 C 0.11 0.99 5.59 36.01 0.20 1.19 16 22 C -0.10 -0.81 5.52 -104.63 -0.58 -1.38 16 23 C -0.09 -0.72 9.70 -39.58 -0.38 -1.10 16 24 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 25 C -0.11 -0.68 10.05 -39.58 -0.40 -1.08 16 26 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 27 C -0.09 -0.72 9.70 -39.59 -0.38 -1.10 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.04 7.85 -51.92 -0.41 0.63 16 30 H 0.08 1.34 7.47 -51.93 -0.39 0.95 16 31 H 0.28 7.25 8.73 -40.82 -0.36 6.90 16 32 H 0.10 1.69 8.10 -51.91 -0.42 1.26 16 33 H 0.10 1.68 8.10 -51.92 -0.42 1.26 16 34 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.72 8.08 -51.93 -0.42 0.31 16 37 H 0.08 0.72 8.08 -51.93 -0.42 0.31 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 40 H 0.12 0.49 8.06 -52.49 -0.42 0.07 16 41 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 42 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 379.30 15.07 5.72 5.72 Total: -1.00 -34.12 379.30 -9.98 -44.10 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: -5.45 Total: -4.15 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -3.67 Total: -2.96 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: 0.95 Total: -51.12 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -0.70 Total: -12.12 kcal Atomic # 14 Polarization: 27.99 SS G_CDS: -4.49 Total: 23.50 kcal Atomic # 16 Polarization: -0.63 SS G_CDS: -2.34 Total: -2.97 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.12 -9.98 -44.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280007853.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.439 kcal (2) G-P(sol) polarization free energy of solvation -34.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds