Wall clock time and date at job start Wed Apr 1 2020 04:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.38351 * 127.15092 * 2 1 4 4 C 1.39771 * 126.56590 * 359.97438 * 3 2 1 5 5 H 1.08004 * 120.00111 * 7.90962 * 4 3 2 6 6 C 1.40084 * 120.00218 * 187.90579 * 4 3 2 7 7 N 1.30817 * 119.99946 * 191.23483 * 6 4 3 8 8 Si 1.86798 * 119.99751 * 11.23165 * 6 4 3 9 9 H 1.48506 * 109.46877 * 270.00124 * 8 6 4 10 10 H 1.48499 * 109.47207 * 29.99996 * 8 6 4 11 11 H 1.48496 * 109.47289 * 150.00071 * 8 6 4 12 12 N 1.33095 * 106.86805 * 179.73687 * 3 2 1 13 13 N 1.28516 * 109.75073 * 0.23892 * 12 3 2 14 14 C 1.32394 * 110.20034 * 0.02562 * 13 12 3 15 15 S 1.76200 * 126.25874 * 180.02562 * 14 13 12 16 16 C 1.81001 * 99.99813 * 359.97384 * 15 14 13 17 17 C 1.52998 * 109.47038 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47333 * 180.02562 * 17 16 15 19 19 O 1.20834 * 119.99988 * 359.97438 * 18 17 16 20 20 O 1.34229 * 120.00566 * 179.97438 * 18 17 16 21 21 C 1.45192 * 117.00565 * 179.97438 * 20 18 17 22 22 C 1.50703 * 109.47414 * 180.02562 * 21 20 18 23 23 C 1.38234 * 119.99732 * 269.72978 * 22 21 20 24 24 C 1.38237 * 119.99796 * 179.76441 * 23 22 21 25 25 C 1.38238 * 119.99902 * 0.50759 * 24 23 22 26 26 C 1.38241 * 119.99724 * 359.74495 * 25 24 23 27 27 C 1.38225 * 119.99979 * 90.00324 * 22 21 20 28 28 H 1.09004 * 109.46941 * 90.00466 * 1 2 3 29 29 H 1.09008 * 109.47284 * 209.99945 * 1 2 3 30 30 H 1.08993 * 109.47266 * 330.00347 * 1 2 3 31 31 H 0.96998 * 119.99838 * 354.77302 * 7 6 4 32 32 H 1.09004 * 109.47482 * 299.99714 * 16 15 14 33 33 H 1.08994 * 109.47277 * 59.99785 * 16 15 14 34 34 H 1.09003 * 109.47123 * 299.99625 * 17 16 15 35 35 H 1.08994 * 109.47549 * 59.99600 * 17 16 15 36 36 H 1.09002 * 109.47227 * 300.00436 * 21 20 18 37 37 H 1.09007 * 109.46890 * 60.00202 * 21 20 18 38 38 H 1.07998 * 120.00229 * 359.97438 * 23 22 21 39 39 H 1.07999 * 120.00248 * 180.23003 * 24 23 22 40 40 H 1.08002 * 119.99834 * 179.72372 * 25 24 23 41 41 H 1.08002 * 119.99298 * 179.97438 * 26 25 24 42 42 H 1.08001 * 120.00335 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3005 1.1027 0.0000 4 6 1.9086 2.4444 -0.0005 5 1 0.8679 2.7030 0.1278 6 6 2.8657 3.4536 -0.1673 7 7 2.5435 4.7028 0.0494 8 14 4.6020 3.0155 -0.6990 9 1 5.4387 2.7639 0.5018 10 1 4.5678 1.7943 -1.5433 11 1 5.1797 4.1399 -1.4782 12 7 3.5489 0.6414 0.0058 13 7 3.5370 -0.6438 0.0043 14 6 2.2903 -1.0894 -0.0031 15 16 1.7873 -2.7780 -0.0072 16 6 3.4058 -3.5881 0.0007 17 6 3.2163 -5.1063 -0.0023 18 6 4.5638 -5.7809 0.0049 19 8 5.5725 -5.1156 0.0112 20 8 4.6438 -7.1208 0.0043 21 6 5.9743 -7.7019 0.0109 22 6 5.8661 -9.2050 0.0085 23 6 5.8156 -9.8961 1.2046 24 6 5.7115 -11.2746 1.2025 25 6 5.6684 -11.9626 0.0042 26 6 5.7242 -11.2717 -1.1918 27 6 5.8231 -9.8929 -1.1896 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5137 31 1 1.6246 4.9386 0.2514 32 1 3.9655 -3.2906 -0.8862 33 1 3.9560 -3.2920 0.8937 34 1 2.6566 -5.4043 0.8844 35 1 2.6662 -5.4021 -0.8955 36 1 6.5177 -7.3757 -0.8760 37 1 6.5082 -7.3770 0.9040 38 1 5.8541 -9.3590 2.1407 39 1 5.6683 -11.8143 2.1369 40 1 5.5916 -13.0399 0.0026 41 1 5.6910 -11.8094 -2.1279 42 1 5.8666 -9.3533 -2.1241 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280007853.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:21 Heat of formation + Delta-G solvation = -24.575077 kcal Electronic energy + Delta-G solvation = -25671.117675 eV Core-core repulsion = 21742.291922 eV Total energy + Delta-G solvation = -3928.825753 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.83581 -41.67185 -40.07395 -37.72372 -35.93544 -35.41958 -34.30245 -33.07932 -31.98312 -31.84099 -28.49180 -28.03165 -27.28309 -25.76240 -23.53285 -23.34008 -22.44663 -22.16897 -21.62624 -20.18992 -18.99558 -18.26404 -18.09939 -17.86098 -17.24803 -17.01456 -16.82857 -16.25924 -16.08902 -15.81136 -15.50798 -15.43172 -14.97649 -14.66478 -14.34327 -14.19060 -14.09717 -14.02198 -13.94315 -13.56992 -13.45410 -13.25017 -13.08351 -12.89266 -12.58874 -12.12106 -12.08379 -11.99257 -11.79527 -11.70949 -11.63248 -11.52656 -11.39644 -10.87219 -10.54956 -10.35321 -9.86520 -9.84088 -9.49484 -8.69389 -6.84832 0.08690 0.30010 0.46082 0.98434 1.03574 1.10013 1.49778 1.60559 1.80197 1.94361 2.08788 2.22344 2.39507 2.88556 3.04067 3.41195 3.60379 3.77442 3.83654 3.90687 3.95203 4.12356 4.21236 4.26046 4.32657 4.36134 4.43724 4.50023 4.57453 4.58364 4.59092 4.69639 4.70263 4.86957 4.99791 5.11492 5.23863 5.29427 5.37672 5.51547 5.57446 5.58295 5.70677 6.00958 6.04268 6.39984 6.58377 6.63973 7.92265 8.16896 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.025446 B = 0.001758 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.092409 B =15924.858102 C =16682.852051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.514 5.514 3 C 0.324 3.676 4 C -0.510 4.510 5 H 0.085 0.915 6 C 0.045 3.955 7 N -0.822 5.822 8 Si 1.135 2.865 9 H -0.289 1.289 10 H -0.277 1.277 11 H -0.294 1.294 12 N -0.444 5.444 13 N -0.314 5.314 14 C 0.073 3.927 15 S 0.038 5.962 16 C -0.091 4.091 17 C -0.087 4.087 18 C 0.472 3.528 19 O -0.538 6.538 20 O -0.348 6.348 21 C 0.105 3.895 22 C -0.113 4.113 23 C -0.108 4.108 24 C -0.129 4.129 25 C -0.113 4.113 26 C -0.129 4.129 27 C -0.108 4.108 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.287 0.713 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.131 0.869 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.530 -32.840 -0.494 32.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.214 5.214 3 C 0.076 3.924 4 C -0.551 4.551 5 H 0.103 0.897 6 C -0.175 4.175 7 N -0.448 5.448 8 Si 0.963 3.037 9 H -0.216 1.216 10 H -0.203 1.203 11 H -0.223 1.223 12 N -0.292 5.292 13 N -0.157 5.157 14 C -0.302 4.302 15 S 0.264 5.736 16 C -0.241 4.241 17 C -0.126 4.126 18 C 0.315 3.685 19 O -0.427 6.427 20 O -0.265 6.265 21 C 0.032 3.968 22 C -0.113 4.113 23 C -0.126 4.126 24 C -0.147 4.147 25 C -0.131 4.131 26 C -0.147 4.147 27 C -0.126 4.126 28 H 0.098 0.902 29 H 0.120 0.880 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.149 0.851 39 H 0.163 0.837 40 H 0.165 0.835 41 H 0.163 0.837 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.612 -32.461 -0.733 32.475 hybrid contribution -1.492 0.844 0.497 1.785 sum -0.880 -31.617 -0.236 31.630 Atomic orbital electron populations 1.21936 0.74495 1.04714 1.03878 1.46227 1.08448 1.04045 1.62685 1.21763 0.85642 0.89938 0.95016 1.19368 0.97928 0.87561 1.50255 0.89707 1.27667 1.08451 0.91619 0.89787 1.70648 1.22751 1.19064 1.32302 0.82433 0.70136 0.73079 0.78002 1.21595 1.20310 1.22262 1.74100 1.17336 1.02146 1.35655 1.74251 1.17380 1.05029 1.19013 1.26594 0.90298 0.96241 1.17038 1.84017 1.09244 0.85737 1.94567 1.23139 0.97194 0.96811 1.06946 1.21088 0.91971 0.89685 1.09831 1.23842 0.92485 0.80809 0.71411 1.90747 1.39497 1.66006 1.46486 1.86554 1.34382 1.21817 1.83745 1.21923 0.81344 0.89897 1.03609 1.19548 1.04382 0.92634 0.94758 1.21316 0.98420 0.95272 0.97580 1.21481 0.99830 0.93840 0.99560 1.21621 0.97785 1.01432 0.92278 1.21481 0.99826 0.93818 0.99582 1.21313 0.98426 0.95288 0.97552 0.90163 0.87974 0.89984 0.90182 0.90015 0.90014 0.83695 0.83677 0.90257 0.90258 0.85113 0.83731 0.83501 0.83724 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.97 10.89 127.77 1.39 4.36 16 2 N -0.51 -23.19 3.26 -543.62 -1.77 -24.96 16 3 C 0.32 17.51 7.21 133.23 0.96 18.47 16 4 C -0.51 -27.81 9.47 23.09 0.22 -27.59 16 5 H 0.08 4.45 7.46 -2.91 -0.02 4.43 16 6 C 0.05 2.49 5.52 85.29 0.47 2.96 16 7 N -0.82 -44.72 13.65 21.86 0.30 -44.42 16 8 Si 1.14 58.55 26.40 68.60 1.81 60.36 16 9 H -0.29 -15.28 7.11 99.48 0.71 -14.58 16 10 H -0.28 -15.14 6.25 99.48 0.62 -14.51 16 11 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 12 N -0.44 -25.53 7.50 -55.02 -0.41 -25.94 16 13 N -0.31 -16.58 11.62 -56.17 -0.65 -17.23 16 14 C 0.07 3.22 8.09 179.18 1.45 4.67 16 15 S 0.04 1.09 21.79 -56.49 -1.23 -0.14 16 16 C -0.09 -2.54 4.51 71.98 0.32 -2.22 16 17 C -0.09 -1.54 5.81 29.85 0.17 -1.37 16 18 C 0.47 10.76 7.96 71.24 0.57 11.33 16 19 O -0.54 -16.80 15.73 21.94 0.35 -16.46 16 20 O -0.35 -6.96 10.20 -51.41 -0.52 -7.48 16 21 C 0.11 1.93 5.59 71.24 0.40 2.33 16 22 C -0.11 -1.81 5.52 -19.87 -0.11 -1.92 16 23 C -0.11 -1.51 9.70 22.27 0.22 -1.29 16 24 C -0.13 -1.42 10.05 22.27 0.22 -1.20 16 25 C -0.11 -1.12 10.05 22.27 0.22 -0.90 16 26 C -0.13 -1.42 10.05 22.27 0.22 -1.20 16 27 C -0.11 -1.51 9.70 22.27 0.22 -1.29 16 28 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.10 2.62 7.85 -2.38 -0.02 2.61 16 30 H 0.08 2.62 7.47 -2.39 -0.02 2.61 16 31 H 0.29 14.81 8.73 -92.71 -0.81 14.00 16 32 H 0.08 2.66 8.10 -2.39 -0.02 2.64 16 33 H 0.08 2.66 8.10 -2.40 -0.02 2.64 16 34 H 0.15 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.15 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.08 1.45 8.08 -2.39 -0.02 1.43 16 37 H 0.08 1.45 8.08 -2.38 -0.02 1.43 16 38 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 39 H 0.14 0.94 8.06 -2.91 -0.02 0.91 16 40 H 0.15 0.70 8.06 -2.91 -0.02 0.68 16 41 H 0.14 0.93 8.06 -2.91 -0.02 0.91 16 42 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -76.16 379.30 5.73 -70.44 By element: Atomic # 1 Polarization: -0.22 SS G_CDS: 0.92 Total: 0.69 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 6.95 Total: 5.14 kcal Atomic # 7 Polarization: -110.02 SS G_CDS: -2.54 Total: -112.55 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.18 Total: -23.94 kcal Atomic # 14 Polarization: 58.55 SS G_CDS: 1.81 Total: 60.36 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -1.23 Total: -0.14 kcal Total: -76.16 5.73 -70.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280007853.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.862 kcal (2) G-P(sol) polarization free energy of solvation -76.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds