Wall clock time and date at job start Wed Apr 1 2020 04:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 120.00251 * 2 1 4 4 C 1.53002 * 109.46840 * 269.99954 * 3 2 1 5 5 C 1.47206 * 109.46998 * 180.02562 * 4 3 2 6 6 N 4.80466 * 118.48725 * 340.02529 * 2 1 3 7 7 C 1.34773 * 120.00098 * 179.97438 * 2 1 3 8 8 O 1.21367 * 120.00648 * 174.34381 * 7 2 1 9 9 C 1.49319 * 119.99988 * 354.34545 * 7 2 1 10 10 O 1.21401 * 120.00002 * 359.70828 * 9 7 2 11 11 N 1.34777 * 120.00252 * 179.71794 * 9 7 2 12 12 C 1.39863 * 119.99970 * 185.17514 * 11 9 7 13 13 C 1.38742 * 120.10834 * 326.39064 * 12 11 9 14 14 C 1.38206 * 120.00148 * 180.02562 * 13 12 11 15 15 C 1.38326 * 120.22418 * 359.95862 * 14 13 12 16 16 C 1.38178 * 120.22010 * 0.02562 * 15 14 13 17 17 C 1.38793 * 119.99400 * 0.02822 * 16 15 14 18 18 S 1.76199 * 120.11401 * 179.97438 * 17 16 15 19 19 C 1.81404 * 103.00068 * 359.97438 * 18 17 16 20 20 C 1.50695 * 109.47526 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99697 * 359.97438 * 20 19 18 22 22 C 1.37871 * 120.00262 * 180.02562 * 20 19 18 23 23 N 1.31516 * 120.00371 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99957 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47153 * 90.00300 * 24 22 20 26 26 H 1.48496 * 109.47504 * 210.00406 * 24 22 20 27 27 H 1.48504 * 109.47108 * 330.00138 * 24 22 20 28 28 H 1.08999 * 109.47163 * 264.06740 * 1 2 3 29 29 H 1.09005 * 109.47089 * 24.07080 * 1 2 3 30 30 H 1.09003 * 109.46848 * 144.06548 * 1 2 3 31 31 H 1.09001 * 109.46976 * 29.99709 * 3 2 1 32 32 H 1.08999 * 109.47304 * 150.00114 * 3 2 1 33 33 H 1.09001 * 109.47136 * 299.99657 * 4 3 2 34 34 H 1.08994 * 109.47389 * 60.00279 * 4 3 2 35 35 H 0.96998 * 120.00165 * 5.16675 * 11 9 7 36 36 H 1.08003 * 119.99633 * 0.02562 * 13 12 11 37 37 H 1.08005 * 119.88387 * 179.97438 * 14 13 12 38 38 H 1.08003 * 119.89127 * 179.74704 * 15 14 13 39 39 H 1.07999 * 120.00654 * 179.97438 * 16 15 14 40 40 H 1.09007 * 109.46864 * 300.00018 * 19 18 17 41 41 H 1.09003 * 109.46972 * 59.99577 * 19 18 17 42 42 H 0.96996 * 120.00095 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 3.1892 2.9848 -1.4426 6 7 3.7566 3.9689 -1.4426 7 6 2.1389 -1.1672 0.0005 8 8 3.3481 -1.1699 -0.1031 9 6 1.3978 -2.4571 0.1285 10 8 0.1886 -2.4543 0.2374 11 7 2.0711 -3.6246 0.1233 12 6 1.3713 -4.8355 0.1340 13 6 0.1653 -4.9365 0.8125 14 6 -0.5241 -6.1343 0.8221 15 6 -0.0164 -7.2352 0.1560 16 6 1.1837 -7.1449 -0.5229 17 6 1.8841 -5.9468 -0.5375 18 16 3.4151 -5.8283 -1.4017 19 6 3.6296 -7.4960 -2.0825 20 6 4.9174 -7.5584 -2.8626 21 1 5.5440 -6.6822 -2.9413 22 6 5.2952 -8.7336 -3.4766 23 7 6.4189 -8.7880 -4.1578 24 14 4.2111 -10.2487 -3.3410 25 1 3.2398 -10.2646 -4.4642 26 1 5.0557 -11.4687 -3.3997 27 1 3.4758 -10.2175 -2.0511 28 1 -0.3633 -0.1062 1.0221 29 1 -0.3633 0.9383 -0.4192 30 1 -0.3633 -0.8321 -0.6031 31 1 1.6085 2.0284 0.5138 32 1 3.1500 1.1384 0.5138 33 1 3.0417 0.9506 -1.9563 34 1 1.5002 1.8407 -1.9564 35 1 3.0410 -3.6251 0.1120 36 1 -0.2347 -4.0790 1.3332 37 1 -1.4625 -6.2109 1.3512 38 1 -0.5576 -8.1698 0.1704 39 1 1.5771 -8.0067 -1.0414 40 1 3.6633 -8.2194 -1.2678 41 1 2.7934 -7.7297 -2.7416 42 1 6.6848 -9.6149 -4.5895 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283117469.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:41 Heat of formation + Delta-G solvation = 1.532580 kcal Electronic energy + Delta-G solvation = -26609.249873 eV Core-core repulsion = 22681.556232 eV Total energy + Delta-G solvation = -3927.693640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.35927 -39.68044 -38.18570 -37.37647 -36.35762 -34.83242 -33.20783 -32.18744 -31.05085 -29.83071 -29.40362 -27.34086 -26.31292 -23.92774 -22.91418 -22.83593 -21.44847 -20.08538 -18.44879 -18.21947 -17.69819 -17.32321 -16.85472 -16.57838 -16.37742 -15.81984 -15.36988 -15.16249 -14.93802 -14.64080 -14.30450 -14.11978 -13.78735 -13.61460 -13.43036 -13.34633 -13.26069 -13.06892 -13.02557 -12.79001 -12.64576 -12.52411 -12.28139 -11.96533 -11.63167 -11.48114 -11.32197 -10.95238 -10.69281 -10.41492 -10.31554 -9.82572 -9.63185 -9.41164 -9.33046 -9.29936 -8.82223 -8.32656 -6.82480 -6.30248 -4.34925 0.87283 1.41724 1.54024 1.85351 2.16263 2.39771 2.40784 2.89686 3.08380 3.12875 3.19386 3.20369 3.33420 3.65391 3.83582 4.02940 4.19725 4.38731 4.42804 4.78183 4.81752 5.00451 5.00766 5.10263 5.15448 5.19600 5.31974 5.35479 5.47806 5.54760 5.63766 5.82466 5.94239 6.18222 6.26581 6.36285 6.42247 6.47157 6.54665 6.61670 6.95735 7.06025 7.15766 7.24944 7.39172 7.70125 8.14713 8.69886 9.23957 10.81353 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011341 B = 0.002707 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.431105 B =10339.396684 C =12541.058437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.590 5.590 3 C 0.120 3.880 4 C -0.046 4.046 5 C 0.211 3.789 6 N -0.431 5.431 7 C 0.510 3.490 8 O -0.503 6.503 9 C 0.509 3.491 10 O -0.502 6.502 11 N -0.628 5.628 12 C 0.138 3.862 13 C -0.102 4.102 14 C -0.125 4.125 15 C -0.107 4.107 16 C -0.122 4.122 17 C -0.093 4.093 18 S -0.118 6.118 19 C 0.030 3.970 20 C -0.522 4.522 21 H 0.086 0.914 22 C 0.084 3.916 23 N -0.886 5.886 24 Si 0.876 3.124 25 H -0.272 1.272 26 H -0.281 1.281 27 H -0.265 1.265 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.426 0.574 36 H 0.142 0.858 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.044 0.956 41 H 0.040 0.960 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.684 14.099 10.683 24.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.324 5.324 3 C -0.004 4.004 4 C -0.087 4.087 5 C -0.108 4.108 6 N -0.108 5.108 7 C 0.292 3.708 8 O -0.377 6.377 9 C 0.291 3.709 10 O -0.378 6.378 11 N -0.274 5.274 12 C 0.038 3.962 13 C -0.123 4.123 14 C -0.147 4.147 15 C -0.128 4.128 16 C -0.147 4.147 17 C -0.209 4.209 18 S 0.130 5.870 19 C -0.117 4.117 20 C -0.561 4.561 21 H 0.104 0.896 22 C -0.122 4.122 23 N -0.522 5.522 24 Si 0.703 3.297 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.189 1.189 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.265 0.735 36 H 0.159 0.841 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.149 0.851 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.001 16.421 10.359 24.535 hybrid contribution -1.078 -2.398 -0.028 2.630 sum -16.078 14.023 10.331 23.704 Atomic orbital electron populations 1.22325 0.76901 1.04013 1.03812 1.47595 1.08471 1.04537 1.71821 1.21455 0.99268 0.84702 0.94979 1.19680 1.00485 0.88390 1.00133 1.28859 0.93754 0.94392 0.93776 1.81270 1.09582 1.12152 1.07786 1.20032 0.87437 0.84958 0.78355 1.90846 1.13372 1.86848 1.46615 1.20011 0.87548 0.85032 0.78324 1.90705 1.13398 1.86724 1.46933 1.43101 1.11788 1.03272 1.69284 1.17109 0.94761 0.84031 1.00345 1.21154 0.94005 0.98702 0.98447 1.20947 1.00202 0.92533 1.01016 1.21078 0.95569 0.98651 0.97479 1.21157 0.95780 0.96515 1.01255 1.22079 1.01532 0.95916 1.01373 1.85437 1.17778 1.23895 1.59898 1.21757 1.01977 0.89092 0.98913 1.20382 1.03534 0.99752 1.32459 0.89634 1.24826 0.94977 0.98280 0.94092 1.69850 1.21876 1.27838 1.32662 0.86833 0.80892 0.82757 0.79267 1.19691 1.20601 1.18931 0.91629 0.91107 0.88154 0.88690 0.88445 0.86434 0.86860 0.73511 0.84071 0.85829 0.85940 0.85124 0.93759 0.94214 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.38 9.26 59.85 0.55 0.93 16 2 N -0.59 -4.14 2.87 -182.13 -0.52 -4.66 16 3 C 0.12 0.61 5.29 -4.04 -0.02 0.59 16 4 C -0.05 -0.21 6.03 -29.51 -0.18 -0.39 16 5 C 0.21 1.64 15.43 -20.76 -0.32 1.32 16 6 N -0.43 -4.81 18.54 42.15 0.78 -4.03 16 7 C 0.51 5.37 7.72 -11.65 -0.09 5.28 16 8 O -0.50 -6.51 16.12 5.48 0.09 -6.42 16 9 C 0.51 6.07 7.62 -11.65 -0.09 5.99 16 10 O -0.50 -6.00 10.60 5.45 0.06 -5.94 16 11 N -0.63 -8.56 5.02 -10.15 -0.05 -8.61 16 12 C 0.14 2.06 6.34 -83.50 -0.53 1.53 16 13 C -0.10 -1.34 8.71 -39.41 -0.34 -1.69 16 14 C -0.12 -1.50 10.04 -39.56 -0.40 -1.90 16 15 C -0.11 -1.39 10.04 -39.57 -0.40 -1.79 16 16 C -0.12 -1.94 9.36 -39.40 -0.37 -2.30 16 17 C -0.09 -1.58 6.13 -38.87 -0.24 -1.82 16 18 S -0.12 -2.32 20.70 -107.50 -2.23 -4.55 16 19 C 0.03 0.69 3.16 36.00 0.11 0.80 16 20 C -0.52 -14.16 9.68 -34.44 -0.33 -14.49 16 21 H 0.09 2.54 7.96 -52.48 -0.42 2.13 16 22 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 23 N -0.89 -25.86 13.96 55.43 0.77 -25.08 16 24 Si 0.88 19.99 27.47 -169.99 -4.67 15.32 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16 28 H 0.07 0.35 8.13 -51.93 -0.42 -0.07 16 29 H 0.07 0.18 8.03 -51.93 -0.42 -0.24 16 30 H 0.10 0.72 5.85 -51.93 -0.30 0.41 16 31 H 0.09 0.26 8.07 -51.93 -0.42 -0.16 16 32 H 0.10 0.62 7.51 -51.93 -0.39 0.23 16 33 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.11 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.43 5.91 7.41 -40.82 -0.30 5.61 16 36 H 0.14 1.74 6.09 -52.48 -0.32 1.42 16 37 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 38 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 39 H 0.13 2.15 5.88 -52.49 -0.31 1.84 16 40 H 0.04 0.98 6.81 -51.92 -0.35 0.63 16 41 H 0.04 0.87 7.18 -51.92 -0.37 0.50 16 42 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 375.91 15.07 5.66 5.66 Total: -1.00 -32.38 375.91 -7.72 -40.10 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -4.88 Total: 3.95 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -2.73 Total: -5.75 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.98 Total: -42.38 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.15 Total: -12.36 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.67 Total: 15.32 kcal Atomic # 16 Polarization: -2.32 SS G_CDS: -2.23 Total: -4.55 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.38 -7.72 -40.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283117469.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.636 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds