Wall clock time and date at job start Wed Apr 1 2020 04:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 120.00251 * 2 1 4 4 C 1.53002 * 109.46840 * 269.99954 * 3 2 1 5 5 C 1.47206 * 109.46998 * 180.02562 * 4 3 2 6 6 N 4.80466 * 118.48725 * 340.02529 * 2 1 3 7 7 C 1.34773 * 120.00098 * 179.97438 * 2 1 3 8 8 O 1.21367 * 120.00648 * 174.34381 * 7 2 1 9 9 C 1.49319 * 119.99988 * 354.34545 * 7 2 1 10 10 O 1.21401 * 120.00002 * 359.70828 * 9 7 2 11 11 N 1.34777 * 120.00252 * 179.71794 * 9 7 2 12 12 C 1.39863 * 119.99970 * 185.17514 * 11 9 7 13 13 C 1.38742 * 120.10834 * 326.39064 * 12 11 9 14 14 C 1.38206 * 120.00148 * 180.02562 * 13 12 11 15 15 C 1.38326 * 120.22418 * 359.95862 * 14 13 12 16 16 C 1.38178 * 120.22010 * 0.02562 * 15 14 13 17 17 C 1.38793 * 119.99400 * 0.02822 * 16 15 14 18 18 S 1.76199 * 120.11401 * 179.97438 * 17 16 15 19 19 C 1.81404 * 103.00068 * 359.97438 * 18 17 16 20 20 C 1.50695 * 109.47526 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99697 * 359.97438 * 20 19 18 22 22 C 1.37871 * 120.00262 * 180.02562 * 20 19 18 23 23 N 1.31516 * 120.00371 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99957 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47153 * 90.00300 * 24 22 20 26 26 H 1.48496 * 109.47504 * 210.00406 * 24 22 20 27 27 H 1.48504 * 109.47108 * 330.00138 * 24 22 20 28 28 H 1.08999 * 109.47163 * 264.06740 * 1 2 3 29 29 H 1.09005 * 109.47089 * 24.07080 * 1 2 3 30 30 H 1.09003 * 109.46848 * 144.06548 * 1 2 3 31 31 H 1.09001 * 109.46976 * 29.99709 * 3 2 1 32 32 H 1.08999 * 109.47304 * 150.00114 * 3 2 1 33 33 H 1.09001 * 109.47136 * 299.99657 * 4 3 2 34 34 H 1.08994 * 109.47389 * 60.00279 * 4 3 2 35 35 H 0.96998 * 120.00165 * 5.16675 * 11 9 7 36 36 H 1.08003 * 119.99633 * 0.02562 * 13 12 11 37 37 H 1.08005 * 119.88387 * 179.97438 * 14 13 12 38 38 H 1.08003 * 119.89127 * 179.74704 * 15 14 13 39 39 H 1.07999 * 120.00654 * 179.97438 * 16 15 14 40 40 H 1.09007 * 109.46864 * 300.00018 * 19 18 17 41 41 H 1.09003 * 109.46972 * 59.99577 * 19 18 17 42 42 H 0.96996 * 120.00095 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 3.1892 2.9848 -1.4426 6 7 3.7566 3.9689 -1.4426 7 6 2.1389 -1.1672 0.0005 8 8 3.3481 -1.1699 -0.1031 9 6 1.3978 -2.4571 0.1285 10 8 0.1886 -2.4543 0.2374 11 7 2.0711 -3.6246 0.1233 12 6 1.3713 -4.8355 0.1340 13 6 0.1653 -4.9365 0.8125 14 6 -0.5241 -6.1343 0.8221 15 6 -0.0164 -7.2352 0.1560 16 6 1.1837 -7.1449 -0.5229 17 6 1.8841 -5.9468 -0.5375 18 16 3.4151 -5.8283 -1.4017 19 6 3.6296 -7.4960 -2.0825 20 6 4.9174 -7.5584 -2.8626 21 1 5.5440 -6.6822 -2.9413 22 6 5.2952 -8.7336 -3.4766 23 7 6.4189 -8.7880 -4.1578 24 14 4.2111 -10.2487 -3.3410 25 1 3.2398 -10.2646 -4.4642 26 1 5.0557 -11.4687 -3.3997 27 1 3.4758 -10.2175 -2.0511 28 1 -0.3633 -0.1062 1.0221 29 1 -0.3633 0.9383 -0.4192 30 1 -0.3633 -0.8321 -0.6031 31 1 1.6085 2.0284 0.5138 32 1 3.1500 1.1384 0.5138 33 1 3.0417 0.9506 -1.9563 34 1 1.5002 1.8407 -1.9564 35 1 3.0410 -3.6251 0.1120 36 1 -0.2347 -4.0790 1.3332 37 1 -1.4625 -6.2109 1.3512 38 1 -0.5576 -8.1698 0.1704 39 1 1.5771 -8.0067 -1.0414 40 1 3.6633 -8.2194 -1.2678 41 1 2.7934 -7.7297 -2.7416 42 1 6.6848 -9.6149 -4.5895 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283117469.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:40 Heat of formation + Delta-G solvation = -18.924345 kcal Electronic energy + Delta-G solvation = -26610.136952 eV Core-core repulsion = 22681.556232 eV Total energy + Delta-G solvation = -3928.580719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.25142 -40.58773 -39.17116 -38.08007 -37.10912 -35.80280 -35.24524 -32.74036 -32.29279 -31.31959 -30.79589 -27.88805 -27.03841 -25.14288 -24.32879 -23.98006 -22.49962 -20.96069 -19.53370 -19.01737 -18.81162 -18.47610 -18.22293 -17.50864 -17.19705 -16.69219 -16.56194 -16.09295 -15.92601 -15.81965 -15.41990 -15.10350 -14.92530 -14.91385 -14.75539 -14.47511 -14.35315 -13.97071 -13.89399 -13.65930 -13.61161 -13.43442 -13.07397 -12.86117 -12.71801 -12.62395 -12.37092 -12.19450 -12.08638 -11.93889 -11.77117 -11.47361 -10.98565 -10.91512 -10.63837 -10.43263 -9.95118 -9.40398 -8.40458 -8.27528 -6.51875 -0.08826 0.31383 0.54572 0.66909 1.13158 1.33621 1.35213 1.45295 1.72552 1.73970 1.78648 2.01921 2.27169 2.32665 2.76522 2.92628 3.05435 3.19518 3.87424 3.96403 4.00021 4.16625 4.33722 4.39041 4.44991 4.46968 4.47603 4.52466 4.65203 4.72407 4.78984 4.86084 4.95118 5.08024 5.17081 5.24608 5.26185 5.32348 5.43825 5.56357 5.81231 5.99119 6.01410 6.08754 6.50996 6.52327 6.56189 6.78706 7.11418 8.75072 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011341 B = 0.002707 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.431105 B =10339.396684 C =12541.058437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.574 5.574 3 C 0.117 3.883 4 C -0.038 4.038 5 C 0.242 3.758 6 N -0.494 5.494 7 C 0.508 3.492 8 O -0.537 6.537 9 C 0.509 3.491 10 O -0.499 6.499 11 N -0.639 5.639 12 C 0.136 3.864 13 C -0.106 4.106 14 C -0.106 4.106 15 C -0.105 4.105 16 C -0.136 4.136 17 C -0.116 4.116 18 S -0.148 6.148 19 C 0.038 3.962 20 C -0.535 4.535 21 H 0.039 0.961 22 C 0.023 3.977 23 N -0.936 5.936 24 Si 0.949 3.051 25 H -0.260 1.260 26 H -0.277 1.277 27 H -0.241 1.241 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.130 0.870 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.149 0.851 35 H 0.421 0.579 36 H 0.153 0.847 37 H 0.163 0.837 38 H 0.155 0.845 39 H 0.121 0.879 40 H 0.050 0.950 41 H 0.047 0.953 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.097 13.913 12.270 28.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.306 5.306 3 C -0.006 4.006 4 C -0.079 4.079 5 C -0.076 4.076 6 N -0.172 5.172 7 C 0.290 3.710 8 O -0.414 6.414 9 C 0.292 3.708 10 O -0.375 6.375 11 N -0.284 5.284 12 C 0.035 3.965 13 C -0.127 4.127 14 C -0.127 4.127 15 C -0.125 4.125 16 C -0.160 4.160 17 C -0.231 4.231 18 S 0.098 5.902 19 C -0.110 4.110 20 C -0.573 4.573 21 H 0.058 0.942 22 C -0.177 4.177 23 N -0.575 5.575 24 Si 0.770 3.230 25 H -0.185 1.185 26 H -0.202 1.202 27 H -0.164 1.164 28 H 0.088 0.912 29 H 0.127 0.873 30 H 0.101 0.899 31 H 0.148 0.852 32 H 0.100 0.900 33 H 0.127 0.873 34 H 0.166 0.834 35 H 0.259 0.741 36 H 0.171 0.829 37 H 0.181 0.819 38 H 0.172 0.828 39 H 0.139 0.861 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.481 16.281 11.970 28.070 hybrid contribution 0.162 -2.193 -0.436 2.241 sum -19.319 14.089 11.535 26.548 Atomic orbital electron populations 1.22472 0.75314 1.05436 1.04094 1.47676 1.09367 1.03960 1.69592 1.21636 0.99240 0.84338 0.95353 1.19802 1.01525 0.86426 1.00161 1.29272 0.92358 0.94096 0.91851 1.81304 1.11622 1.14333 1.09897 1.19863 0.86993 0.85410 0.78719 1.90842 1.14586 1.87174 1.48754 1.20296 0.87639 0.85125 0.77770 1.90695 1.13245 1.86873 1.46645 1.43213 1.11636 1.03652 1.69943 1.17328 0.95312 0.83897 0.99916 1.21402 0.93281 0.99874 0.98141 1.21430 1.00838 0.91243 0.99212 1.21416 0.94383 1.00376 0.96315 1.21268 0.97024 0.95722 1.02000 1.21957 1.00331 0.97628 1.03172 1.85375 1.21352 1.21915 1.61573 1.21469 0.99646 0.91287 0.98619 1.20585 1.04959 0.98511 1.33277 0.94224 1.25861 0.96443 1.02073 0.93361 1.70008 1.24202 1.29118 1.34139 0.85686 0.79001 0.77665 0.80617 1.18508 1.20243 1.16402 0.91164 0.87271 0.89850 0.85226 0.89951 0.87267 0.83377 0.74105 0.82928 0.81904 0.82771 0.86087 0.93163 0.93444 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 9.26 127.77 1.18 1.67 16 2 N -0.57 -6.76 2.87 -848.49 -2.44 -9.20 16 3 C 0.12 0.91 5.29 86.38 0.46 1.37 16 4 C -0.04 -0.27 6.03 28.79 0.17 -0.10 16 5 C 0.24 3.47 15.43 89.44 1.38 4.85 16 6 N -0.49 -10.94 18.54 20.01 0.37 -10.57 16 7 C 0.51 10.38 7.72 87.23 0.67 11.05 16 8 O -0.54 -14.21 16.12 -3.30 -0.05 -14.26 16 9 C 0.51 11.76 7.62 87.23 0.66 12.43 16 10 O -0.50 -10.98 10.60 -3.40 -0.04 -11.02 16 11 N -0.64 -17.46 5.02 -304.37 -1.53 -18.99 16 12 C 0.14 3.93 6.34 38.31 0.24 4.18 16 13 C -0.11 -2.50 8.71 22.38 0.19 -2.30 16 14 C -0.11 -2.09 10.04 22.28 0.22 -1.86 16 15 C -0.10 -2.33 10.04 22.28 0.22 -2.11 16 16 C -0.14 -4.08 9.36 22.39 0.21 -3.87 16 17 C -0.12 -3.88 6.13 22.73 0.14 -3.74 16 18 S -0.15 -6.06 20.70 -56.49 -1.17 -7.23 16 19 C 0.04 1.74 3.16 71.23 0.23 1.97 16 20 C -0.53 -30.35 9.68 25.60 0.25 -30.10 16 21 H 0.04 2.54 7.96 -2.91 -0.02 2.51 16 22 C 0.02 1.32 5.47 84.65 0.46 1.78 16 23 N -0.94 -56.87 13.96 21.45 0.30 -56.58 16 24 Si 0.95 41.24 27.47 68.60 1.88 43.12 16 25 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 26 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 27 H -0.24 -9.45 6.54 99.48 0.65 -8.80 16 28 H 0.07 0.50 8.13 -2.39 -0.02 0.49 16 29 H 0.11 0.01 8.03 -2.38 -0.02 -0.01 16 30 H 0.08 0.97 5.85 -2.39 -0.01 0.95 16 31 H 0.13 0.18 8.07 -2.39 -0.02 0.17 16 32 H 0.08 0.96 7.51 -2.39 -0.02 0.94 16 33 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.15 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.42 12.26 7.41 -92.71 -0.69 11.57 16 36 H 0.15 3.26 6.09 -2.91 -0.02 3.25 16 37 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 38 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 39 H 0.12 3.81 5.88 -2.91 -0.02 3.80 16 40 H 0.05 2.23 6.81 -2.39 -0.02 2.21 16 41 H 0.05 2.09 7.18 -2.39 -0.02 2.07 16 42 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -75.84 375.91 4.37 -71.47 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.34 Total: 18.04 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: 6.70 Total: -4.80 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -3.30 Total: -95.33 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.09 Total: -25.28 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 1.88 Total: 43.12 kcal Atomic # 16 Polarization: -6.06 SS G_CDS: -1.17 Total: -7.23 kcal Total: -75.84 4.37 -71.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283117469.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.544 kcal (2) G-P(sol) polarization free energy of solvation -75.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds