Wall clock time and date at job start Wed Apr 1 2020 04:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00082 * 2 1 4 4 C 1.50701 * 109.47143 * 269.99698 * 3 2 1 5 5 H 1.07999 * 119.99611 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99957 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00171 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99718 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47242 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46588 * 120.00329 * 8 6 4 11 11 H 1.48492 * 109.47348 * 240.00186 * 8 6 4 12 12 C 1.34779 * 119.99954 * 179.97438 * 2 1 3 13 13 O 1.21606 * 119.99726 * 181.95906 * 12 2 1 14 14 C 1.47444 * 119.99994 * 1.95103 * 12 2 1 15 15 N 1.31501 * 120.86834 * 353.50029 * 14 12 2 16 16 N 1.27889 * 123.08734 * 181.18498 * 15 14 12 17 17 C 1.39973 * 117.87221 * 190.27677 * 16 15 14 18 18 C 1.38904 * 120.04710 * 224.01321 * 17 16 15 19 19 C 1.38077 * 119.95083 * 180.02562 * 18 17 16 20 20 C 1.38504 * 120.05081 * 0.02562 * 19 18 17 21 21 F 1.35097 * 119.95405 * 179.97438 * 20 19 18 22 22 C 1.38508 * 120.09432 * 0.24790 * 20 19 18 23 23 C 1.38075 * 120.04530 * 359.49946 * 22 20 19 24 24 C 1.34166 * 124.25331 * 9.99614 * 16 15 14 25 25 O 1.20827 * 119.86013 * 185.55073 * 24 16 15 26 26 C 1.51230 * 120.28296 * 5.52347 * 24 16 15 27 27 C 1.47517 * 120.84178 * 173.21201 * 14 12 2 28 28 O 1.21340 * 121.88952 * 333.41871 * 27 14 12 29 29 H 1.09003 * 109.47623 * 264.02469 * 1 2 3 30 30 H 1.09006 * 109.46714 * 24.02492 * 1 2 3 31 31 H 1.08998 * 109.47152 * 144.02355 * 1 2 3 32 32 H 1.09000 * 109.47515 * 29.99816 * 3 2 1 33 33 H 1.09006 * 109.47477 * 149.99515 * 3 2 1 34 34 H 0.97000 * 120.00069 * 180.02562 * 7 6 4 35 35 H 1.08001 * 120.02755 * 0.04107 * 18 17 16 36 36 H 1.08007 * 119.97153 * 179.97438 * 19 18 17 37 37 H 1.08000 * 119.98059 * 179.74563 * 22 20 19 38 38 H 1.08005 * 120.02304 * 180.25417 * 23 22 20 39 39 H 1.09006 * 109.93925 * 91.58368 * 26 24 16 40 40 H 1.08999 * 109.94712 * 212.74221 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5533 3.6181 -0.6732 8 14 3.4381 3.4167 -3.4340 9 1 2.8610 2.4162 -4.3673 10 1 2.8000 4.7371 -3.6680 11 1 4.9006 3.5255 -3.6666 12 6 2.1388 -1.1672 0.0005 13 8 3.3544 -1.1675 0.0365 14 6 1.4023 -2.4438 -0.0424 15 7 0.0905 -2.4691 0.0463 16 7 -0.5892 -3.5524 0.0360 17 6 -1.9800 -3.4512 -0.0848 18 6 -2.8062 -4.2268 0.7185 19 6 -4.1779 -4.1257 0.5974 20 6 -4.7303 -3.2522 -0.3247 21 9 -6.0726 -3.1552 -0.4419 22 6 -3.9083 -2.4819 -1.1306 23 6 -2.5361 -2.5760 -1.0091 24 6 -0.0552 -4.7798 0.1279 25 8 -0.7610 -5.7533 0.0093 26 6 1.4264 -4.9501 0.3788 27 6 2.1177 -3.7251 -0.1923 28 8 3.1979 -3.7958 -0.7406 29 1 -0.3634 -0.1070 1.0221 30 1 -0.3633 0.9387 -0.4184 31 1 -0.3633 -0.8316 -0.6037 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5139 34 1 4.0296 4.4443 -0.8504 35 1 -2.3760 -4.9083 1.4375 36 1 -4.8206 -4.7290 1.2215 37 1 -4.3409 -1.8043 -1.8518 38 1 -1.8955 -1.9722 -1.6349 39 1 1.6165 -5.0187 1.4499 40 1 1.7872 -5.8490 -0.1210 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283145496.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:46 Heat of formation + Delta-G solvation = -28.557995 kcal Electronic energy + Delta-G solvation = -30206.778966 eV Core-core repulsion = 25711.567325 eV Total energy + Delta-G solvation = -4495.211642 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.26202 -42.74203 -39.93733 -39.06354 -38.52624 -38.18488 -34.97274 -33.73541 -32.62035 -31.72789 -31.48720 -29.69231 -27.82444 -26.75407 -25.42814 -24.08078 -23.45632 -23.22222 -22.16053 -20.29281 -19.16927 -18.23663 -17.97174 -17.94816 -17.33321 -16.58027 -16.36210 -16.23186 -15.95036 -15.52581 -15.40161 -15.15551 -14.89712 -14.56760 -14.38974 -14.18461 -14.11258 -13.82328 -13.58724 -13.33365 -13.24419 -12.89564 -12.75865 -12.48343 -12.40989 -12.12298 -11.67052 -11.45661 -11.20580 -10.92615 -10.68338 -10.51599 -10.21150 -10.04228 -9.86519 -9.62769 -9.58561 -9.22191 -8.57938 -8.47568 -7.76516 -6.08724 -4.13802 0.02694 0.48910 0.76179 1.56090 1.72685 2.03884 2.95684 3.03149 3.28677 3.35088 3.36829 3.40485 3.61326 3.82268 3.98702 4.19285 4.27360 4.36965 4.41589 4.43139 4.58756 4.66243 4.75979 4.88058 5.07968 5.25491 5.30304 5.42325 5.60423 5.64496 5.70557 5.79805 5.84510 5.99816 6.30941 6.36295 6.78272 6.90450 6.97766 7.32440 7.41081 7.64545 7.87024 8.15013 8.19622 8.72829 8.92737 9.51463 10.99429 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011196 B = 0.003386 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.308199 B = 8267.741877 C =10083.426596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.573 5.573 3 C 0.243 3.757 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.569 3.431 13 O -0.511 6.511 14 C -0.003 4.003 15 N -0.150 5.150 16 N -0.352 5.352 17 C 0.119 3.881 18 C -0.067 4.067 19 C -0.140 4.140 20 C 0.105 3.895 21 F -0.135 7.135 22 C -0.137 4.137 23 C -0.073 4.073 24 C 0.492 3.508 25 O -0.471 6.471 26 C -0.183 4.183 27 C 0.371 3.629 28 O -0.377 6.377 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.039 0.961 33 H 0.049 0.951 34 H 0.264 0.736 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.156 0.844 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.213 -16.379 4.304 23.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.304 5.304 3 C 0.125 3.875 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.351 3.649 13 O -0.384 6.384 14 C -0.189 4.189 15 N 0.023 4.977 16 N -0.168 5.168 17 C 0.030 3.970 18 C -0.087 4.087 19 C -0.159 4.159 20 C 0.085 3.915 21 F -0.114 7.114 22 C -0.157 4.157 23 C -0.093 4.093 24 C 0.281 3.719 25 O -0.339 6.339 26 C -0.223 4.223 27 C 0.238 3.762 28 O -0.240 6.240 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.157 0.843 36 H 0.162 0.838 37 H 0.165 0.835 38 H 0.163 0.837 39 H 0.173 0.827 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.933 -16.437 4.059 23.248 hybrid contribution 0.380 -0.154 -0.926 1.013 sum -15.552 -16.590 3.132 22.955 Atomic orbital electron populations 1.22167 0.80359 1.03064 1.01121 1.48138 1.07036 1.07037 1.68199 1.19475 0.92767 0.77324 0.97949 1.21438 1.36835 1.06444 0.92057 0.92216 1.24920 0.95203 0.96314 0.97519 1.69933 1.38226 1.14305 1.30709 0.86429 0.78170 0.78303 0.84457 1.19767 1.20935 1.20803 1.16893 0.86551 0.81308 0.80107 1.90883 1.11893 1.85435 1.50210 1.25883 0.88758 0.98462 1.05813 1.71773 1.09150 1.11257 1.05537 1.43573 1.06112 1.02938 1.64207 1.17538 0.79197 1.01391 0.98866 1.20823 0.92220 0.98366 0.97335 1.20972 0.94983 1.00049 0.99907 1.17788 0.77304 0.98335 0.98042 1.91525 1.29629 1.95113 1.95130 1.21047 0.92760 1.00996 1.00870 1.20967 0.94710 0.97576 0.96031 1.21506 0.91120 0.83074 0.76244 1.90680 1.62091 1.37403 1.43745 1.23005 0.90062 1.01718 1.07486 1.22791 0.86725 0.88373 0.78301 1.90694 1.17674 1.86829 1.28845 0.93228 0.90773 0.90168 0.94282 0.93343 0.92666 0.84267 0.83755 0.83480 0.83658 0.82719 0.83463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.18 9.36 59.84 0.56 1.74 16 2 N -0.57 -11.69 2.86 -184.22 -0.53 -12.22 16 3 C 0.24 6.10 5.15 -5.19 -0.03 6.07 16 4 C -0.53 -14.54 9.39 -34.44 -0.32 -14.86 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.43 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.57 11.64 7.63 -12.51 -0.10 11.55 16 13 O -0.51 -12.65 15.60 -9.72 -0.15 -12.81 16 14 C 0.00 -0.04 6.82 -80.48 -0.55 -0.59 16 15 N -0.15 -1.90 6.08 34.61 0.21 -1.69 16 16 N -0.35 -3.90 3.36 -9.88 -0.03 -3.93 16 17 C 0.12 1.21 5.60 -83.64 -0.47 0.74 16 18 C -0.07 -0.59 8.54 -39.39 -0.34 -0.93 16 19 C -0.14 -1.09 10.02 -39.54 -0.40 -1.48 16 20 C 0.10 0.89 7.30 -39.38 -0.29 0.61 16 21 F -0.14 -1.24 17.26 2.25 0.04 -1.20 16 22 C -0.14 -1.11 10.02 -39.54 -0.40 -1.51 16 23 C -0.07 -0.67 9.39 -39.39 -0.37 -1.04 16 24 C 0.49 5.16 7.20 -11.00 -0.08 5.08 16 25 O -0.47 -5.57 15.21 5.94 0.09 -5.48 16 26 C -0.18 -1.62 6.52 -28.23 -0.18 -1.80 16 27 C 0.37 5.16 6.87 -29.98 -0.21 4.95 16 28 O -0.38 -6.64 17.04 -9.49 -0.16 -6.80 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.14 8.03 -51.93 -0.42 0.72 16 31 H 0.08 1.09 4.28 -51.95 -0.22 0.86 16 32 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 33 H 0.05 1.36 7.39 -51.93 -0.38 0.98 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.14 1.13 7.12 -52.49 -0.37 0.75 16 36 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 37 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.15 1.29 7.15 -52.48 -0.38 0.91 16 39 H 0.16 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.15 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 355.51 15.07 5.36 5.36 Total: -1.00 -34.15 355.51 -6.57 -40.72 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: -3.85 Total: -3.46 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: -3.26 Total: 10.18 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.39 Total: -42.94 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.22 Total: -25.08 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.15 -6.57 -40.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283145496.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.160 kcal (2) G-P(sol) polarization free energy of solvation -34.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds