Wall clock time and date at job start Wed Apr 1 2020 04:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00082 * 2 1 4 4 C 1.50701 * 109.47143 * 269.99698 * 3 2 1 5 5 H 1.07999 * 119.99611 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99957 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00171 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99718 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47242 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46588 * 120.00329 * 8 6 4 11 11 H 1.48492 * 109.47348 * 240.00186 * 8 6 4 12 12 C 1.34779 * 119.99954 * 179.97438 * 2 1 3 13 13 O 1.21606 * 119.99726 * 181.95906 * 12 2 1 14 14 C 1.47444 * 119.99994 * 1.95103 * 12 2 1 15 15 N 1.31501 * 120.86834 * 353.50029 * 14 12 2 16 16 N 1.27889 * 123.08734 * 181.18498 * 15 14 12 17 17 C 1.39973 * 117.87221 * 190.27677 * 16 15 14 18 18 C 1.38904 * 120.04710 * 224.01321 * 17 16 15 19 19 C 1.38077 * 119.95083 * 180.02562 * 18 17 16 20 20 C 1.38504 * 120.05081 * 0.02562 * 19 18 17 21 21 F 1.35097 * 119.95405 * 179.97438 * 20 19 18 22 22 C 1.38508 * 120.09432 * 0.24790 * 20 19 18 23 23 C 1.38075 * 120.04530 * 359.49946 * 22 20 19 24 24 C 1.34166 * 124.25331 * 9.99614 * 16 15 14 25 25 O 1.20827 * 119.86013 * 185.55073 * 24 16 15 26 26 C 1.51230 * 120.28296 * 5.52347 * 24 16 15 27 27 C 1.47517 * 120.84178 * 173.21201 * 14 12 2 28 28 O 1.21340 * 121.88952 * 333.41871 * 27 14 12 29 29 H 1.09003 * 109.47623 * 264.02469 * 1 2 3 30 30 H 1.09006 * 109.46714 * 24.02492 * 1 2 3 31 31 H 1.08998 * 109.47152 * 144.02355 * 1 2 3 32 32 H 1.09000 * 109.47515 * 29.99816 * 3 2 1 33 33 H 1.09006 * 109.47477 * 149.99515 * 3 2 1 34 34 H 0.97000 * 120.00069 * 180.02562 * 7 6 4 35 35 H 1.08001 * 120.02755 * 0.04107 * 18 17 16 36 36 H 1.08007 * 119.97153 * 179.97438 * 19 18 17 37 37 H 1.08000 * 119.98059 * 179.74563 * 22 20 19 38 38 H 1.08005 * 120.02304 * 180.25417 * 23 22 20 39 39 H 1.09006 * 109.93925 * 91.58368 * 26 24 16 40 40 H 1.08999 * 109.94712 * 212.74221 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5533 3.6181 -0.6732 8 14 3.4381 3.4167 -3.4340 9 1 2.8610 2.4162 -4.3673 10 1 2.8000 4.7371 -3.6680 11 1 4.9006 3.5255 -3.6666 12 6 2.1388 -1.1672 0.0005 13 8 3.3544 -1.1675 0.0365 14 6 1.4023 -2.4438 -0.0424 15 7 0.0905 -2.4691 0.0463 16 7 -0.5892 -3.5524 0.0360 17 6 -1.9800 -3.4512 -0.0848 18 6 -2.8062 -4.2268 0.7185 19 6 -4.1779 -4.1257 0.5974 20 6 -4.7303 -3.2522 -0.3247 21 9 -6.0726 -3.1552 -0.4419 22 6 -3.9083 -2.4819 -1.1306 23 6 -2.5361 -2.5760 -1.0091 24 6 -0.0552 -4.7798 0.1279 25 8 -0.7610 -5.7533 0.0093 26 6 1.4264 -4.9501 0.3788 27 6 2.1177 -3.7251 -0.1923 28 8 3.1979 -3.7958 -0.7406 29 1 -0.3634 -0.1070 1.0221 30 1 -0.3633 0.9387 -0.4184 31 1 -0.3633 -0.8316 -0.6037 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5139 34 1 4.0296 4.4443 -0.8504 35 1 -2.3760 -4.9083 1.4375 36 1 -4.8206 -4.7290 1.2215 37 1 -4.3409 -1.8043 -1.8518 38 1 -1.8955 -1.9722 -1.6349 39 1 1.6165 -5.0187 1.4499 40 1 1.7872 -5.8490 -0.1210 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283145496.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:46 Heat of formation + Delta-G solvation = -49.742316 kcal Electronic energy + Delta-G solvation = -30207.697587 eV Core-core repulsion = 25711.567325 eV Total energy + Delta-G solvation = -4496.130263 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.94841 -43.71431 -41.14960 -40.12156 -39.63561 -39.24215 -36.67773 -35.00431 -34.37323 -32.55661 -32.30068 -30.65989 -29.57434 -27.97718 -26.83243 -25.13985 -24.91367 -23.97849 -23.22663 -21.63391 -20.10253 -19.31643 -19.02283 -18.70601 -18.66703 -18.23528 -17.65717 -17.15385 -17.02591 -16.63385 -16.54323 -16.35318 -16.13469 -15.89504 -15.57421 -15.24843 -14.98406 -14.70134 -14.57986 -14.47819 -14.27890 -14.10892 -14.02447 -13.74690 -13.48228 -13.43501 -13.25371 -12.95499 -12.68006 -12.44052 -12.22556 -12.10336 -11.69635 -11.61715 -11.35734 -10.76692 -10.63281 -10.61837 -10.23338 -9.56948 -9.33826 -8.21081 -6.35047 -1.07739 -0.23974 0.11931 0.57614 0.74933 1.01821 1.38843 1.41806 1.52814 1.79850 2.11191 2.23277 2.39791 2.55342 2.64785 3.09608 3.16273 3.25234 3.43854 3.62895 3.70011 3.73538 3.94683 4.02417 4.14712 4.23007 4.48161 4.51311 4.75014 4.81839 4.87346 4.99070 4.99879 5.02224 5.09764 5.13729 5.23925 5.54349 5.67393 5.79733 5.83638 5.99565 6.05366 6.52174 6.63709 6.73021 7.16803 7.36974 8.86400 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011196 B = 0.003386 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.308199 B = 8267.741877 C =10083.426596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.582 5.582 3 C 0.258 3.742 4 C -0.544 4.544 5 H 0.054 0.946 6 C 0.012 3.988 7 N -0.925 5.925 8 Si 0.965 3.035 9 H -0.268 1.268 10 H -0.268 1.268 11 H -0.283 1.283 12 C 0.565 3.435 13 O -0.568 6.568 14 C -0.036 4.036 15 N -0.114 5.114 16 N -0.343 5.343 17 C 0.093 3.907 18 C -0.066 4.066 19 C -0.133 4.133 20 C 0.101 3.899 21 F -0.139 7.139 22 C -0.134 4.134 23 C -0.079 4.079 24 C 0.496 3.504 25 O -0.474 6.474 26 C -0.163 4.163 27 C 0.377 3.623 28 O -0.428 6.428 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.036 0.964 33 H 0.007 0.993 34 H 0.268 0.732 35 H 0.149 0.851 36 H 0.168 0.832 37 H 0.164 0.836 38 H 0.146 0.854 39 H 0.195 0.805 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.898 -18.170 4.050 26.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.312 5.312 3 C 0.137 3.863 4 C -0.582 4.582 5 H 0.072 0.928 6 C -0.188 4.188 7 N -0.565 5.565 8 Si 0.789 3.211 9 H -0.193 1.193 10 H -0.193 1.193 11 H -0.209 1.209 12 C 0.351 3.649 13 O -0.445 6.445 14 C -0.220 4.220 15 N 0.056 4.944 16 N -0.161 5.161 17 C 0.004 3.996 18 C -0.086 4.086 19 C -0.153 4.153 20 C 0.081 3.919 21 F -0.117 7.117 22 C -0.153 4.153 23 C -0.098 4.098 24 C 0.286 3.714 25 O -0.342 6.342 26 C -0.202 4.202 27 C 0.248 3.752 28 O -0.294 6.294 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.054 0.946 33 H 0.025 0.975 34 H 0.077 0.923 35 H 0.166 0.834 36 H 0.185 0.815 37 H 0.182 0.818 38 H 0.163 0.837 39 H 0.211 0.789 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -18.687 -18.255 3.814 26.401 hybrid contribution 0.935 0.321 -0.783 1.261 sum -17.752 -17.934 3.032 25.416 Atomic orbital electron populations 1.22396 0.77230 1.03891 1.02973 1.48095 1.08863 1.05807 1.68445 1.18951 0.91494 0.79431 0.96417 1.21704 1.37025 1.06607 0.92904 0.92788 1.25785 0.94841 0.96394 1.01746 1.70039 1.38827 1.14788 1.32833 0.85408 0.77846 0.78428 0.79373 1.19262 1.19297 1.20899 1.17416 0.86249 0.82693 0.78569 1.90832 1.14509 1.86667 1.52526 1.24972 0.89533 0.96994 1.10515 1.71583 1.08125 1.12443 1.02236 1.43757 1.06571 1.02847 1.62882 1.17825 0.78538 1.02889 1.00318 1.20943 0.92446 0.98066 0.97152 1.21214 0.94847 0.99635 0.99566 1.17961 0.77188 0.98514 0.98243 1.91524 1.29927 1.95140 1.95159 1.21221 0.92289 1.00932 1.00903 1.21030 0.95239 0.97492 0.96065 1.21719 0.91611 0.82504 0.75588 1.90696 1.62420 1.37387 1.43666 1.23087 0.87822 0.99628 1.09627 1.23247 0.85937 0.89168 0.76860 1.90682 1.19899 1.87464 1.31376 0.90934 0.90867 0.88258 0.94647 0.97537 0.92335 0.83369 0.81461 0.81795 0.83653 0.78864 0.80918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.32 9.36 127.77 1.20 3.52 16 2 N -0.58 -24.55 2.86 -855.01 -2.44 -26.99 16 3 C 0.26 13.58 5.15 85.63 0.44 14.02 16 4 C -0.54 -30.87 9.39 25.60 0.24 -30.63 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.67 5.46 84.66 0.46 1.13 16 7 N -0.93 -54.97 13.29 21.45 0.28 -54.69 16 8 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 9 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 10 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 C 0.57 24.14 7.63 86.67 0.66 24.81 16 13 O -0.57 -30.03 15.60 10.29 0.16 -29.87 16 14 C -0.04 -1.10 6.82 44.07 0.30 -0.80 16 15 N -0.11 -2.70 6.08 -44.42 -0.27 -2.97 16 16 N -0.34 -6.71 3.36 -304.08 -1.02 -7.73 16 17 C 0.09 1.62 5.60 38.16 0.21 1.83 16 18 C -0.07 -0.95 8.54 22.39 0.19 -0.75 16 19 C -0.13 -1.63 10.02 22.30 0.22 -1.41 16 20 C 0.10 1.42 7.30 22.40 0.16 1.59 16 21 F -0.14 -2.18 17.26 44.97 0.78 -1.41 16 22 C -0.13 -1.82 10.02 22.30 0.22 -1.59 16 23 C -0.08 -1.25 9.39 22.39 0.21 -1.04 16 24 C 0.50 8.82 7.20 87.92 0.63 9.45 16 25 O -0.47 -9.47 15.21 -1.65 -0.03 -9.50 16 26 C -0.16 -2.38 6.52 29.63 0.19 -2.19 16 27 C 0.38 10.29 6.87 28.49 0.20 10.48 16 28 O -0.43 -15.45 17.04 11.12 0.19 -15.26 16 29 H 0.07 1.84 8.14 -2.39 -0.02 1.83 16 30 H 0.07 2.22 8.03 -2.38 -0.02 2.20 16 31 H 0.10 2.57 4.28 -2.41 -0.01 2.56 16 32 H 0.04 1.86 8.07 -2.39 -0.02 1.84 16 33 H 0.01 0.39 7.39 -2.38 -0.02 0.38 16 34 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 35 H 0.15 1.85 7.12 -2.91 -0.02 1.83 16 36 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 37 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 38 H 0.15 2.28 7.15 -2.91 -0.02 2.26 16 39 H 0.19 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.17 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -78.39 355.51 6.34 -72.05 By element: Atomic # 1 Polarization: 0.31 SS G_CDS: 1.11 Total: 1.42 kcal Atomic # 6 Polarization: 22.86 SS G_CDS: 5.55 Total: 28.41 kcal Atomic # 7 Polarization: -88.93 SS G_CDS: -3.45 Total: -92.38 kcal Atomic # 8 Polarization: -54.96 SS G_CDS: 0.32 Total: -54.63 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.78 Total: -1.41 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -78.39 6.34 -72.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283145496.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.305 kcal (2) G-P(sol) polarization free energy of solvation -78.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds